Pnir056813.1
Basic Information
- Insect
- Pleistodontes nigriventris
- Gene Symbol
- nfx1_1
- Assembly
- GCA_903653215.1
- Location
- CAHLDJ010021952.1:2-1540[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.2 2.8e+04 -2.9 1.1 15 18 115 118 114 119 0.81 2 12 0.0022 50 5.9 11.0 4 14 162 172 149 177 0.86 3 12 0.97 2.2e+04 -2.5 3.5 1 4 187 190 184 196 0.79 4 12 2.1e-05 0.47 12.4 12.9 1 18 217 234 217 235 0.92 5 12 0.25 5.5e+03 -0.6 0.4 1 5 285 289 285 294 0.87 6 12 0.32 7.1e+03 -1.0 0.9 8 13 312 317 311 318 0.78 7 12 0.45 1e+04 -1.5 1.0 6 10 339 343 338 343 0.90 8 12 2.9e-08 0.00065 21.5 8.5 1 18 349 365 349 366 0.97 9 12 0.19 4.3e+03 -0.3 7.2 1 11 405 415 405 416 0.86 10 12 1.8 4.1e+04 -3.4 0.8 4 10 454 460 453 460 0.86 11 12 9.1e-09 0.00021 23.1 13.8 1 18 466 485 466 486 0.87 12 12 0.46 1e+04 -1.5 0.9 9 13 494 498 492 499 0.79
Sequence Information
- Coding Sequence
- GTTCAAGGCTCTGAACAAACTCCGGATCTCAACATCACTGAATCTGAAGAACGCATCTCACCGCTAGATGCGAACGCCACCGATGACCTTTCCGATGAGGATTCCGACTCAAGTTCAGACTCAGATGCTGATGGTAGTGCCCAAGAGGAGGAGCTTGATCTAGCGACTAgtatattgaaagaaataagaGAAGAAGAGTACACTTGCTTGGTTTGTACTTGTGAAATAGGACCCTCTGAAAAAATATGGGCTTGCTCCGATTGTTATAGAGTATACCATATCTCATGTATCAACAATTGGTCTCAGAAAGGTTCATCAACAGATGAGAATGGTAGCTGGAAGTGCCCTGCTTGTAATACAACACACAGAAAACAGAAGTTTCAAAACAGATGTTGGTGTAAAAAGGTTATCCACCCACAAACAAATCCACTAGCTCCAAATAGTTGTGGACAGACCTGCGGAGCTAAACTAGAAGGCTGTCCTCACACATGTACACTACCGTGTCACCCTGGTCCTCATGCTGCCTGTAATGCACTCGGGCCTTTGATGAAGTGTCATTGTGGCAATCATGATACTCAGTGGCCTTGTGTTTTAACTCCATACGTTGAAGGTTGGCACTGTGATGACATTTGCGAGGAATTTTATCCTTGTGAGATACACAAGTGTGGTAAGAAGTGTCACAGTGGTTTGTGTGGGAAATGTGAAGGGTTTGTACAGTCTAAATGTTACTGTGGTGCTACGGAAGATTTTGTCAAATGTCATCTAAGAAAGCCACTCAGAAGTTTTGCATCTGCTAAAGAATTTTGGATAGGAAATTTTGAATGTTCTGTGATATCTGATCTCAAATATGATTGCGGAATTCATTCAGATAAAGTTTCATGCCAACCTCAATCTGGAAAAGTCAAGCATTGTCCATTGAGCCCCGATGTCATTAAAACTTGTCATTGTGGGCAAACCTCCGTCAATGATATTGAGAGCATGACACGTTCTTCGTGCACTGACCCAATACCCTCCTGTGAGAAGCTGTGCAGCAAAAAGTTACCTTGTGGTCATGCTTGCAAATGGATATGTCATGATGGTGATTGTTCTCCTTGCTATGAAGTTGTGAAAAGAGATTGCCGTTGTGGAAACAATACATTTACTGTGCCCTGCAAGTTCGTACAAGAACATAATATACCAGTGTGTACGAGAAAGTGTTCTGCAGTGCTATCTTGTCGTCGTCATAGATGTGGTCAAATTTGTTGTGTGGATGAAAGGACGGCCGAATTACGAGAACGTCAGAGAAAGAAGGCTATCAGAAATAATACAACGAATGTGAGGAATAATCAATCTGAAGAATCGTTCTCCATGGAAGCTACGCACATCTGTTTACAAATGTGTAACAAAAAGCTATCGTGTGGGAACCCTGATCATACATGTTCCAGAACATGTCATGCTGGGCCATGCCCCCCTTGTTTGGAATCATCCAATGATGACCTAGTCTGCCACTGTGGTCAAACCGTTCTTCTTGCTCCAATTCGTTGTGGTGTAACATTACCA
- Protein Sequence
- VQGSEQTPDLNITESEERISPLDANATDDLSDEDSDSSSDSDADGSAQEEELDLATSILKEIREEEYTCLVCTCEIGPSEKIWACSDCYRVYHISCINNWSQKGSSTDENGSWKCPACNTTHRKQKFQNRCWCKKVIHPQTNPLAPNSCGQTCGAKLEGCPHTCTLPCHPGPHAACNALGPLMKCHCGNHDTQWPCVLTPYVEGWHCDDICEEFYPCEIHKCGKKCHSGLCGKCEGFVQSKCYCGATEDFVKCHLRKPLRSFASAKEFWIGNFECSVISDLKYDCGIHSDKVSCQPQSGKVKHCPLSPDVIKTCHCGQTSVNDIESMTRSSCTDPIPSCEKLCSKKLPCGHACKWICHDGDCSPCYEVVKRDCRCGNNTFTVPCKFVQEHNIPVCTRKCSAVLSCRRHRCGQICCVDERTAELRERQRKKAIRNNTTNVRNNQSEESFSMEATHICLQMCNKKLSCGNPDHTCSRTCHAGPCPPCLESSNDDLVCHCGQTVLLAPIRCGVTLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -