Pnir016933.1
Basic Information
- Insect
- Pleistodontes nigriventris
- Gene Symbol
- -
- Assembly
- GCA_903653215.1
- Location
- CAHLDJ010002185.1:21416-41141[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.013 4 9.9 0.1 1 23 1235 1258 1235 1258 0.96 2 13 0.0001 0.032 16.5 0.4 2 23 1309 1330 1308 1330 0.97 3 13 0.01 3.2 10.2 1.5 3 22 1460 1479 1458 1479 0.95 4 13 2.1 6.7e+02 2.9 0.2 3 23 1500 1520 1498 1520 0.95 5 13 0.28 91 5.6 0.6 1 20 1598 1617 1598 1619 0.94 6 13 0.59 1.9e+02 4.6 1.7 2 19 1645 1662 1644 1663 0.95 7 13 0.15 47 6.5 0.2 1 23 1688 1711 1688 1711 0.97 8 13 0.01 3.3 10.2 0.3 1 23 1763 1785 1763 1785 0.97 9 13 0.021 6.6 9.2 0.9 3 23 2099 2119 2098 2119 0.96 10 13 7.5 2.4e+03 1.2 0.4 1 23 2382 2406 2382 2406 0.94 11 13 8.7 2.8e+03 1.0 1.0 3 23 2461 2482 2459 2482 0.92 12 13 0.048 15 8.1 0.1 1 23 2492 2517 2492 2517 0.94 13 13 0.00011 0.034 16.4 0.7 1 23 2519 2541 2519 2541 0.97
Sequence Information
- Coding Sequence
- ATGGAGCTGTTAAGTGAAGTAGAATGTAATCCCAATGGTGATgacaaaaaaaataagcaaGCCACCTTATTTGAGGAAAGTGTACAGAAATCcacttcaaagaaaaaattttataatacagtgTTTGCAACAAAAATGAGAAATCggagaaaagtagaaaaattaggTAAACTTGGAACTAAAGAAGTTTTGAGTGCATGTAAGCCAGTTTCAGTGGATGTAACACGACTTTCTTCAAATTTTGTGcctaaattaatttcttcaatagAGCATAAAAATCGCAAGAAGAAGAAGTTTCAATGGAAGTTAggtaaaactaaaaagaaaaagaaaacacgtgataaagatgaaaaaatagtGAAAGTGAATGTAGGAAATGTGAGTGAAAAAAACAATGTAAGTGAGAACAATTTTACTAACACTGGTAGTttagaaaaagaggaaaaaatagTGGTTAAAGAAAAACTTGATGAAGACAAATTAGGGTTTTCAGAGGAAAAAGATGATACACAAAGAAGAAAGAGCATGAGACATGTTATCCCTATGACATTCTTTGATGAAAAGTGGGATTTTGAAACAAAGCCAGATAATGGACCTATTCcagaagaaaaatttagttgtaGACgcactgaattttttattggtaaattgAATACTAAAGAAgctagaattttaaatattgagaaaattttgAAGGAAGAGAATAAACCATTTAGTCAAACTAAGAATATTAATCTTCTTGatgataagaaaaaagatacattagaaaacattaaagaaaacaatactataattatagataaatcagtttctgcaattaataaaagtatagaaatCAATAACAGTATAGAaacttgtaaaagtaaaaaaaacaatgaaagcataaaaagtaatatgaatatagaagattttaataataaggaaGACCATAAAAATGACGATATAGTTGAAAGTATAGTggatactttgaaaaatagaaaaaaagaagtgGTTATCcaagaatcaaaaaatttattgaaggaAGTAATTGAAACCAAAGAAAATAGCGAGGCCGAAGAAACAACTTGCAGACGTACAGTACCATTTATAGGTAAAATTCCTCGAAATGCTTTACTTGGTGTATCTGAAGGATCCAcagaaatagattttattaaaagtgatgTAAATACCAAATCAGAGTTTTCTAAAAACATGAAAACTAAATCAGATTCTTCTTCAGAAGCTGtaagtgtaaaatttatttcttccaaaggtacagatataaaaattgatacttcaaatgatttgaatatagaattaaataattcaactaataatgtgaaaaatgtTACATcagaagatgaaaataaattaaaatgttctgAAAAAgatgctaatttaaaaatagattcttcTAATGAAacagaagttaaaaaaaatatatgtaacaatataaaattagattatatatctaataatgtCAGTTTAAAGTTAGAGGAATCTCTAattattgatgataaaaaagaaatttggaGTTGCAGAAGAACAGAACCATATTTGGGTAGAGATTATTCTCACTGTAGTCGAacattaccttttttttattcagtgcATAAGGTGAAACCTCCAGGTACATCAGGAACTCATACAAGGATatctaataatacaaattcaCTGCCCAAAATTGCAGATCAACGACATTCAGATAAATCAGATCAATCattgaagaaattaaacaaaaatgaagaTGCAAACATTCCAGACAATCAAgaagatgaattaaataattctgttacTGATACTACTGTTGACATGGGTAGTTTCTCTGATACATTGGTTCAAAATGGAGAATGGAAATTTAGAAGAAAACGTTCTaagataaatttagataatgaaCAACAGaataaatttgacagtgataaaataaatttgagttcGTATAGTCGAAGACGTCTAGTTTCACGTGGAAACGATAATGAGCAAGCAGCCAAAGAGGATTTTTCCAGCCATAGTCTACCAGATACAACCTCCACTACAAATTCTAGCAATGTTCAAATAGAAGATATGACAAAAGTTCAGAATAAAGTAAATCGCCAAACTGAAAGTGAACGAAGCATTAGTCCCGCCATAACGGGACCAAAAACTAGATCAAGAAGAAGACCTCTCAGTAGGATCTCTTCCGAGTCACCGAACATTATATACAGTAAGAGAAAGAAGCGTCCCGTCAATTATATGGAGAACTTTAGTGATTCAGATACAACTTCATCCGGTTCATCCGTTTTGAAACAGCagAATCGACGGCTTACGTTACGCGATCGCCACAAACTAAGAACTTACAGCAATCAAGATGCGGATGAAAACGACATGGAGGTAGAGGAGTTTACCCGTATTGGTTTAAGAAATAGTAGCCAAAGTAGAGGGTTGACTAACAGAAATACGGTTAGCTCGAGCAGCAGATCACAAAGTCAGGGAACTGAAAATTCCGATACTTTTAATGACAATGTGCGTTCTCAGACCACAAGTACCGCTGAAAATGTGGGTGGGACGCCAAAAGTTCAGTCGAACGATAAGAACTCAACTGTAGCATCGAATGAGCTGAGAGAACAAGTTTTTGATGAACGGTCTCAAATTCACGAGGTAGCAGAAAAAGAAGTGGAAGAGATCTTACCGAATCACGTACGACTCAGACCACGCAGTCGGGGTGTAGGTGTCCTTCAGCTCAAAAATCTACAACAGACTGAAATAACGGATAAAATCGATCTGAAACAACAGGTTTCTAGCCGCAGTACACGAACGTCTAGTTTGGACTTTGGAGTTTCGAATGAACGGGTTCTTTCAACGTCCAAAACTTCGAACAAGAATGATGGCAATACCACAATTGGTAAGAAATCGAAGGCGTCAAGGGTAGACGAATCTTTTGGCAATATTAAGAAAGTCTCGAGCACTTCGACTCGAAGCGAGAAGGATCATTTTTGCATTAGGGGTAGCAGATCTAGTTCGCCACCTAAGTCATCGAAACAGACCAAGAACAATACAGTGGAAAAGTTCAACAAATCCAAATTGATTCAAGAAATTTCTCTCAGTAATAAGCAGACGCCGCTCACAAATCTCAAGGttcaacttataaaattagaaactgtGTGCGGTAGTTTCGAGGATTATTCAGCTAGCGAAATAGAAGTACTCACGAGAAAGTATATTGATCTTTTGATGAACTCAAATTTTACCTGTGATACTTGGCGTAATCCCATTAACTATCATCGGTCTGGGTTTACCGAGAAGCACGTTGAACAGGTTGACAATTCCGATTGTATATCAGACATTGACTCGCAAGAGGAAATAGAAGAGTTAACCGCATCAACCGAAAATGAAGATGCCAATAATATTAATCGAACAAAATCAGTTGTCGAAGATAGCATTGATAAGATGAAAGTAAAATCTTTGAAGCAAATCGAAACACAGCTCGCATCGTTTACGACTTTGGAATCTGCGATAGCGACTCTCGTAGATGCTGAGCCTGGTGAGCAACAGAGTTTTGGAGCTGTTAATATTTCAGATGCTCTGAGCAGTCCATCGAAAAGTGGAAAAGAAAAGGAGAAGGAGCAGTCAGTTCAATCGAATatagaaaaagttaataatgaCAATCAGGAAccactaaaaataaatgataaacaacAGTTAACGACGAGCTCTAATACAATTCTAGTAAATGGTACGACGATGTACCCATGTTCGGCTTGCAATAAGATATTTGTTATCGAAAATTCACTCAAACAACACCAAATAAGTGATCATAAAGGTAATGAAGCAACAGTTAATACTAACttagctattactactacttcaaAGTCCAGTACGAAACAAAAAAGTCAAGTTGCCGGAGGTTCAAACTGGAAAAAGATAACGAAGTGTAAGAGGAAACTTAGAGGGAGCTCAGAAAGCTTGAAATGTACAATCTGCTCGGTAACATTCGATACGAAGGAATTACTTTTTGATCACATAATGACGCACAATGAGCAAGAGTTGCAGGAGGCTTACAAAACAGCTAAAGCTAAAGCAAAGCAGCAACAGAGCGAAGGATCCAACAGCTTGTCTGAGGAGTCGGATAAGGAGGTTCACCAGGAAGTAGTTACACAGGATAGTGAggcaaataaaaagaagaagaacgAAAAGAGTAGGAGGAAGAAGAGTACGGATAGCAGTATTCGAAGTAGTACATCATCGATGGATGTTGAAGATGTGGTTTATGAGGATCCATTAAGGGGTGCATGCACTAGAACTGATCCAGTAGTAGTGGGTCAACAACATCAACAGacGATAGATTTGGTATGCCACGAAACTTTAGGTAATATCGAACAAATTTCAACGGACACGTCATGTTCTAAACCTATAACCATCTGTCAAACCTGTAATGTTGTCTTTCGTCGTCGTGATTGTTTTGAGGTACATTACCGAACGAGTTTGGAATGCCGTCGGAAACGTACCAACAACGAGGTGACAAAGGTCCCCAAGCTTTTCTGCAGTGGATGTCCTTGTGTATTGGATTCACTCTTGGATATGCGGGCGCATTTAGAAATGCACGCAAGGAAAAACAGTCAGGGAACTGTCACTTTTATATGCAATATCTGCAAAGTTGCATTCTTCGGTGTGGGAGGAATTTTTTACTCACATTGGTTCAATCATACGAAGGCACCGAATTTCGTAGCGAGTAGATATTCTTTTCCGAAGTTATCGGTGGTCTCGGTACTCGAGGACTCAAATGTCGCTTTGACGACTAGTAAAAGCCAGGAGGGATTTTTCTACATTGCTGAGCATGTTTGCCGACAGTGCAGATTACCGTTCAGTTCAGAACCAGAACTTTTAAAGCATAAGGCCCACCCATGCCAGCCTCAGCAATCAGTTGCCCCACGTGTAGATGCGCAAGAGAGCAACCGTCTACAAATGATAAAGCTTATTTGTGATCTGTGTAAAAAATACTACGTTAGCAAAGAGAACTTCGATAGACATTGTAGTGAACGGAATCATCTCAAAACCCCTATTACGAAATTCTCCCGATTGCCGATTAATGCTAATGAACAAGCCTTTGTCTGCAGTCTATGTCGCGCTGTCAGCAAATCCCTCGATGATATGAAGGAACACTGGAAACGCATTCATAGTCCTATCATGGAGCTCTACACTTGCAAGACTTGTAACATAGTACCCTCAAACGATGTTACGAATTACACGTATGAGAAGTTTGAAAGGCATTGCCGTATTGTTCACAAGAGTGAAGTCATTACGTGTCTTGTGTATTTTGTTACTGCAAGATATGTTTGTAATATCTGCAGATTTGGCTTTGAAACGGAAAAGTCGATGAAGGAGCACCAGGTTGTACATCAAAAGAGATCATCTCAGAGTGTTAGTAATCATGTACCAGCATCCGGATTGCCGATAGAACCACAAACAGCGACACTTTGGGTGGCTGATAAACAAGTGGCTCCTGATGGTGGCAGAAAAGTGCATCCCGTATATGTGCATTATCCGGGCATTAATGGTAACCGTCCGATTCCAATGATACCTACTCCAgtGCCAGTAAATGTTCATGGCCAAAACCAAACGCACATTCGCAATCCGAATCATGTAAGTGGTAATCAGATGAACGCTGCACCGAGTAATGTCGGCAATCCTAACACACCTGCAAGCTCGAACTTTGCTCACGCGTTCAATTCTAATACCGCATCGAATTCGATGTTGCGCAGTATGCTGGCTCAAAAAGCGCTTGATCAGCAACAACCTCCACAACAAAATACCAGAAATTCAAACGTCGAAACGATATTGATCGATTCGAGATCCAATAGTCCAACATCAGATTCGACAGTCCTTTCAAAGGATAAGCCTGCTACAAATAATGCTGACGCAGGCGCTTCTTCAAGAAAGTCTTATATGACGATGGTCAATCCGAACTTCGAATCAATGTTAGGAACAAGCAGTGCTTCTCAGATGGATGAGACTAATAATGACACTTCTCTTTTGGATAAAGAGAATTCGGATTCTGGTGGTAATGCAACACCTGTCAGCATGGATTCATTGACACCGCAGCCTTTCGAAGTGGTTCTTGTGACTGACGATCTAAGTGAAAATTCGAACTGCGAATCACCAAATATAAACGATAGAAGTAAAGCTGCTACAGATAAAGTAATTGACATGGCGAACTCCGCCTTAAATCAGCAGAAGCAACATCAGACGAAGGAGTGTAACGAGGGTTCATCAACGAAGTCTTCCAAGTTCCTACGCGTGCGTTCAATAGCCGAGCTCCAGCGCATGAACATAAATCTGTGCTCGGTATGCGGTTTGAGTTTCGATACCCTTCATGCTTTTGAGCAGCACTCGCAGCAACATGAGATGGTTTTGGAGGGGAACCGAATGACACCAGTGCAAATGATCTCACCGATGCTTGTCCAGGGTAATAAAGATTCAAATGATCCACAAAACGCATTAATCTCACAGATGAGACAGAAAATGGCTTTGCTGACACCCAATGGAACAGAATCACTAAATAGTTTAGATCCGCATAATAAAGCGATGCTTTCCAATCAATTTCAACCACCGCAACAGCAGCATTCGTACTGGTTTGCATCTTGCAATGGCAGACACAATACAACTTCATCATCAAACATGGCATACACTGCATACACTCGCCAGCAGCAGCATCAACACTTACATGAACATCAACCGCATCAACCAGGAATCATTCGGCGACCGGTTAATCTGAATAATGTAGGCGGTGCTTACATGTCTCGAGGTCCACCGCCTCCTTATCCCAGTACTTCAAATTCAGTTACACCTAGTCGGTCTAGTGCCATACAGTTGCCTGAGAGGAACACCGCGGGTAGTGCCACACCGACAACGAAGCGACCTTCGGGTGCTGCAACAAGAATACCGCAACAAAGTTTGCCAAATTACGGGGATACAACCGAACACCGACAAACCggTGGTCGTATGCCGTACACCTCCACCGAGGGCGTGACGAACACTAGAATGCTGCCAAGTGCAGCCGCGAGACATTCCCAGCACGCCCAATACAAGGCTCTTAGTCGACATTCCGGTGAATTCAACTACTCTAGCAGTATTGGCAGCAGTTCTAATTTTCATCATTCTCAACAGCAACATCAGTCAAAGATTATTTACAACTGCAAGATTCAGAATTGCCAGTTTCGATCCGACATTCTTTCTGCCCTGCGTGCCCACGAGAAAAATCACTTGAATCAGCAGCTCCCAACGGTACCTGCCAATCCAATGCAGCAACAGCAACGTCTTCCCATAAAACACGTACCAGTCAGTCAGATGCCCGAGAGACCGCGTCATGCGGTACCAACCAGCCGTCAGCCAACGCTCCCCAACATCCCGGAAAAACGCATAATCTGTCGTATTTGTAACTTCTATTGCGGCTCGGAACCTGAGTTGATAGATCATATTTCGCAGTGCCACAACACACCGAATAGTCAAGTTTGTTGCTACGTTTGTGATTACTGCACAACGCCGCTGATTTTCGAGTCAGAGGACTTACTGCGCAAGCACATGAACGCCAATCACAATCACTCCTGCGAACTCTGTAATAAAAGGTATCCTTCGAAGGAAGACCTGATGCTTCACATGGAGGTTCATGCGAGAGGTACCTGA
- Protein Sequence
- MELLSEVECNPNGDDKKNKQATLFEESVQKSTSKKKFYNTVFATKMRNRRKVEKLGKLGTKEVLSACKPVSVDVTRLSSNFVPKLISSIEHKNRKKKKFQWKLGKTKKKKKTRDKDEKIVKVNVGNVSEKNNVSENNFTNTGSLEKEEKIVVKEKLDEDKLGFSEEKDDTQRRKSMRHVIPMTFFDEKWDFETKPDNGPIPEEKFSCRRTEFFIGKLNTKEARILNIEKILKEENKPFSQTKNINLLDDKKKDTLENIKENNTIIIDKSVSAINKSIEINNSIETCKSKKNNESIKSNMNIEDFNNKEDHKNDDIVESIVDTLKNRKKEVVIQESKNLLKEVIETKENSEAEETTCRRTVPFIGKIPRNALLGVSEGSTEIDFIKSDVNTKSEFSKNMKTKSDSSSEAVSVKFISSKGTDIKIDTSNDLNIELNNSTNNVKNVTSEDENKLKCSEKDANLKIDSSNETEVKKNICNNIKLDYISNNVSLKLEESLIIDDKKEIWSCRRTEPYLGRDYSHCSRTLPFFYSVHKVKPPGTSGTHTRISNNTNSLPKIADQRHSDKSDQSLKKLNKNEDANIPDNQEDELNNSVTDTTVDMGSFSDTLVQNGEWKFRRKRSKINLDNEQQNKFDSDKINLSSYSRRRLVSRGNDNEQAAKEDFSSHSLPDTTSTTNSSNVQIEDMTKVQNKVNRQTESERSISPAITGPKTRSRRRPLSRISSESPNIIYSKRKKRPVNYMENFSDSDTTSSGSSVLKQQNRRLTLRDRHKLRTYSNQDADENDMEVEEFTRIGLRNSSQSRGLTNRNTVSSSSRSQSQGTENSDTFNDNVRSQTTSTAENVGGTPKVQSNDKNSTVASNELREQVFDERSQIHEVAEKEVEEILPNHVRLRPRSRGVGVLQLKNLQQTEITDKIDLKQQVSSRSTRTSSLDFGVSNERVLSTSKTSNKNDGNTTIGKKSKASRVDESFGNIKKVSSTSTRSEKDHFCIRGSRSSSPPKSSKQTKNNTVEKFNKSKLIQEISLSNKQTPLTNLKVQLIKLETVCGSFEDYSASEIEVLTRKYIDLLMNSNFTCDTWRNPINYHRSGFTEKHVEQVDNSDCISDIDSQEEIEELTASTENEDANNINRTKSVVEDSIDKMKVKSLKQIETQLASFTTLESAIATLVDAEPGEQQSFGAVNISDALSSPSKSGKEKEKEQSVQSNIEKVNNDNQEPLKINDKQQLTTSSNTILVNGTTMYPCSACNKIFVIENSLKQHQISDHKGNEATVNTNLAITTTSKSSTKQKSQVAGGSNWKKITKCKRKLRGSSESLKCTICSVTFDTKELLFDHIMTHNEQELQEAYKTAKAKAKQQQSEGSNSLSEESDKEVHQEVVTQDSEANKKKKNEKSRRKKSTDSSIRSSTSSMDVEDVVYEDPLRGACTRTDPVVVGQQHQQTIDLVCHETLGNIEQISTDTSCSKPITICQTCNVVFRRRDCFEVHYRTSLECRRKRTNNEVTKVPKLFCSGCPCVLDSLLDMRAHLEMHARKNSQGTVTFICNICKVAFFGVGGIFYSHWFNHTKAPNFVASRYSFPKLSVVSVLEDSNVALTTSKSQEGFFYIAEHVCRQCRLPFSSEPELLKHKAHPCQPQQSVAPRVDAQESNRLQMIKLICDLCKKYYVSKENFDRHCSERNHLKTPITKFSRLPINANEQAFVCSLCRAVSKSLDDMKEHWKRIHSPIMELYTCKTCNIVPSNDVTNYTYEKFERHCRIVHKSEVITCLVYFVTARYVCNICRFGFETEKSMKEHQVVHQKRSSQSVSNHVPASGLPIEPQTATLWVADKQVAPDGGRKVHPVYVHYPGINGNRPIPMIPTPVPVNVHGQNQTHIRNPNHVSGNQMNAAPSNVGNPNTPASSNFAHAFNSNTASNSMLRSMLAQKALDQQQPPQQNTRNSNVETILIDSRSNSPTSDSTVLSKDKPATNNADAGASSRKSYMTMVNPNFESMLGTSSASQMDETNNDTSLLDKENSDSGGNATPVSMDSLTPQPFEVVLVTDDLSENSNCESPNINDRSKAATDKVIDMANSALNQQKQHQTKECNEGSSTKSSKFLRVRSIAELQRMNINLCSVCGLSFDTLHAFEQHSQQHEMVLEGNRMTPVQMISPMLVQGNKDSNDPQNALISQMRQKMALLTPNGTESLNSLDPHNKAMLSNQFQPPQQQHSYWFASCNGRHNTTSSSNMAYTAYTRQQQHQHLHEHQPHQPGIIRRPVNLNNVGGAYMSRGPPPPYPSTSNSVTPSRSSAIQLPERNTAGSATPTTKRPSGAATRIPQQSLPNYGDTTEHRQTGGRMPYTSTEGVTNTRMLPSAAARHSQHAQYKALSRHSGEFNYSSSIGSSSNFHHSQQQHQSKIIYNCKIQNCQFRSDILSALRAHEKNHLNQQLPTVPANPMQQQQRLPIKHVPVSQMPERPRHAVPTSRQPTLPNIPEKRIICRICNFYCGSEPELIDHISQCHNTPNSQVCCYVCDYCTTPLIFESEDLLRKHMNANHNHSCELCNKRYPSKEDLMLHMEVHARGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -