Basic Information

Insect: Pleistodontes nigriventris
Gene Symbol: Sall1
Assembly: GCA_903653215.1
Location: CAHLDJ010000645.1:80339-88042[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.00011 0.035 16.4 0.3 2 23 330 352 329 352 0.92

2 4 0.00052 0.17 14.2 0.0 2 23 378 400 377 400 0.97

3 4 3.3e-05 0.011 18.0 0.8 3 23 426 446 425 446 0.99

4 4 7.4e-07 0.00023 23.2 1.7 1 23 452 475 452 475 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.00011	0.035	16.4	0.3	2	23	330	352	329	352	0.92
2	4	0.00052	0.17	14.2	0.0	2	23	378	400	377	400	0.97
3	4	3.3e-05	0.011	18.0	0.8	3	23	426	446	425	446	0.99
4	4	7.4e-07	0.00023	23.2	1.7	1	23	452	475	452	475	0.95

Sequence Information

Coding Sequence: atgaatttttccGTTTCAGATATTGTTACAGAGAAAATAGGCATTCCTGCTTCAGAAAACTTCCAGTTGAAGTGGCATAGTTATGGAGCCCATCTTCATAGCTCAGTGGCAACGCTACTGCATTCTGAATCTTTTGCTGATGTTTTATTGGCTACATCTTGTGGGAGACATGTAGCGGCTCATCGATTTGTGTTGGCTGCTTGTTCTTCATACCTCAGTCATATTTTCCAGACTTGTCACTTTGGTGCAAACACAAATGCTCCAATTATTGttGTACTACCAACTGAAATTGGATATCGAACGCTGAAAATCCTAATCCAGTATATGTACAGCGGTGAGACAACGGTAACAAATGATCAATTGGAAGGTGTCCTGAAAGCAGGAGATATTCTACGAGTTCGAGGTCTGTGGCGTTCCAACTCAGGAAGCAAGAAGGAAAATATACAATCAAACAATCAAAAAGTTAGCAGGGATAAACGAGAACAGCCTCCATTGACTAGTCAACTGCAAAAGATCAAACTCGTCCAGCCAACCGCAGAGAAAATTGCCGAGCCAACGCAGCAGCCTGAGTCGAGCTCTGCTGTTCAAAATTCCGTACCGACAGCTCTTAAGACATATGAGAAAAAAAgcgtagaaaaaaatgtttcagaaAAGGAGGATAAAATTGTCGATATAACGGACGGGAAAAAGTCCTCGGACGAAGGCAAAACCAACGAACAAACGAAGAACAAGGAGAATGTTGAAACAAAcagtaaaaagagaaaaaatacgGGTAGCGATGGAGAATCTACCAAATCTAAAAGCGAAGCTGGAGAAAGCaCCGAATTAAATCTGGAAATGTTGGTAAAAGAAGAACCAATCAATTGGGAAGAAACGATCGATCCATCAGATTCGTTAACTATTGATCATGAAATTGACATAAAACCTgaaATAGTGCACAGTGCAGATGAAGATGGCGATTTGGAAGAAGAGGAATATACACCTCTTACCTGTGACATGTGTAGTCAAACTTTCAATAGACCTTCTGATTGGGTTCGGCATATAGAATTCACACATGCTGATATGACAGAAAATAGAAGAAGAAAACGAAAGgGTGATCCAGATGACGACAGTAAAGATTTTCCACCATTGAAGTGTGATTTATGTGGAAATATGTATCCAACACCACAGGAGTGGGTACGTCACATACAAACTGAACACACTGAAGAACAATTAGCTTTAATGAATAATTCTGCACCACCGAAACCCAAAAGAGTTCACAGTCATCAAAAGTTGTGCAACATTTGCCAGAAAGTATTTCCAAGTCACGCATCTATGGTAATCCATCAAAGGACGCATACAGGTGAAAGGCCATTTCTCTGTTCCTACTGCAAGAAGGGTTTTAATGTGAAGAGTAATCTTTTGAGGCATTTGAGAACGTTACATGATAAATTCGTGCATCCAAGCTTGTATGGAAGTAATGGAAACAAAAATGCTTAA
Protein Sequence: MNFSVSDIVTEKIGIPASENFQLKWHSYGAHLHSSVATLLHSESFADVLLATSCGRHVAAHRFVLAACSSYLSHIFQTCHFGANTNAPIIVVLPTEIGYRTLKILIQYMYSGETTVTNDQLEGVLKAGDILRVRGLWRSNSGSKKENIQSNNQKVSRDKREQPPLTSQLQKIKLVQPTAEKIAEPTQQPESSSAVQNSVPTALKTYEKKSVEKNVSEKEDKIVDITDGKKSSDEGKTNEQTKNKENVETNSKKRKNTGSDGESTKSKSEAGESTELNLEMLVKEEPINWEETIDPSDSLTIDHEIDIKPEIVHSADEDGDLEEEEYTPLTCDMCSQTFNRPSDWVRHIEFTHADMTENRRRKRKGDPDDDSKDFPPLKCDLCGNMYPTPQEWVRHIQTEHTEEQLALMNNSAPPKPKRVHSHQKLCNICQKVFPSHASMVIHQRTHTGERPFLCSYCKKGFNVKSNLLRHLRTLHDKFVHPSLYGSNGNKNA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00691297;
90% Identity: iTF_00309760;
80% Identity: iTF_01219204;