Basic Information

Insect: Pleistodontes nigriventris
Gene Symbol: -
Assembly: GCA_903653215.1
Location: CAHLDJ010000837.1:61846-65430[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.028 9 8.8 2.6 1 20 115 134 115 138 0.95

2 13 0.0096 3.1 10.3 4.6 2 23 275 297 275 297 0.91

3 13 0.00031 0.098 15.0 2.3 2 23 359 381 358 381 0.94

4 13 1.9 6e+02 3.1 5.6 3 19 469 486 464 488 0.56

5 13 0.072 23 7.5 0.8 1 23 535 558 535 558 0.94

6 13 0.0021 0.67 12.3 0.0 3 23 607 628 606 628 0.90

7 13 0.0019 0.62 12.4 1.4 3 23 659 680 657 680 0.92

8 13 0.0077 2.5 10.6 3.7 2 23 722 744 721 744 0.96

9 13 0.027 8.5 8.9 2.7 3 23 759 780 757 780 0.94

10 13 1.5e-05 0.0048 19.1 0.2 2 23 825 847 825 847 0.94

11 13 3.5 1.1e+03 2.2 2.3 1 23 932 956 932 956 0.97

12 13 0.0026 0.82 12.1 0.0 2 23 972 994 971 994 0.97

13 13 0.011 3.4 10.1 0.5 1 23 1069 1092 1069 1092 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.028	9	8.8	2.6	1	20	115	134	115	138	0.95
2	13	0.0096	3.1	10.3	4.6	2	23	275	297	275	297	0.91
3	13	0.00031	0.098	15.0	2.3	2	23	359	381	358	381	0.94
4	13	1.9	6e+02	3.1	5.6	3	19	469	486	464	488	0.56
5	13	0.072	23	7.5	0.8	1	23	535	558	535	558	0.94
6	13	0.0021	0.67	12.3	0.0	3	23	607	628	606	628	0.90
7	13	0.0019	0.62	12.4	1.4	3	23	659	680	657	680	0.92
8	13	0.0077	2.5	10.6	3.7	2	23	722	744	721	744	0.96
9	13	0.027	8.5	8.9	2.7	3	23	759	780	757	780	0.94
10	13	1.5e-05	0.0048	19.1	0.2	2	23	825	847	825	847	0.94
11	13	3.5	1.1e+03	2.2	2.3	1	23	932	956	932	956	0.97
12	13	0.0026	0.82	12.1	0.0	2	23	972	994	971	994	0.97
13	13	0.011	3.4	10.1	0.5	1	23	1069	1092	1069	1092	0.98

Sequence Information

Coding Sequence: ATGTCGTTCAGCCAGGAGACGTGCCTGCCAGATCCGGCGGAGATCGATAGCGAGGGTTCGAGCTGCGAGGAGCGAGAATCCCGTAGACGACTGCTCGGTGATCCCGAAAGCCTACCAAAAAAACGACGAAAACAATCAACCCCTGTCAAGTTTTCAACGTCGCTGACCATGGGCGAATGCGATGAGTCCGAAGAAGAATCGACTGAAATCCTGGGAGCGAACAATCATGATCAACACGAGTATGATCAGCATCGCGAGCTGGAAGGTAAGCCGACGACGTCGCCGGACTCTAAATCTATCCAGAGCCATCCGACGATCAAAGACGTTAACCTGAACAATGAATTTCGCTGCCAGTATTGTAGTCAATTTTTCGATAGTCGCGTGACGCTAGAGCTACACCTCGAATGCGAGCATAATTTCGGTTTTCCAAGTAACAATGCCGCGTTGCAACAGCAACAGCATCAGCAGGGACTTTCGAGTAGTAACGATTCGCCGCAAATACAAAATCAAGAGCGAATGAGCCCGGAAACGACCGGCCATTCGGAACAGTCTATAAGTCCGATCAATCTCTCGAGTATTAGCATTAGAAACTTTGCGGCGAGCACGTCCTGGTTGCCGGGGCAAGGACAAATGCAAACGCAGAACGAGTCTTCGCTAGCGAAAATTGCTGCCAGGAATAACAATCATTTTCAGCCAATGTCTGCAGGTTTTCCCGGTCCTCTCGCACAATTTCTACCGATGCCCGGTTTTCCGTTACCGGACTCTACGCAAATACAAAGAGCGGCTATGGGACAATTTCCAAAGATATTTAATCCCGATGCATACTGTGATCTCTGTAATAAGGAATTTTGTAACAAGTATTTTCTCAAGACTCACAAAGCTAACAAACATGGCATTTATGTCGATCCACCGACTACTCAATCCCAAGGTAGTGACGGAGCGCCATCGAGTCCATTTATAACTACTTCGATAAATACtaatacgataaataatatgCCTACGAATatgagtataaaaattgttgaacatcctccgaaaattgaaaataatggaaTTCAACAACAGCTAACAGTACCTTGTGATATATGCTCAAAgcgatttaaaaatgatgattcTTTACGGAAGCATAAACATAAGATTCACATCAATCCAAATAACGACGCTGTTGATTCCACTCAGATCCAAATAACTCTGCCGTCTTCTACTGAAGAAGAAAGACAAAGTCCCGGAGGCATGGAAGCTCTTTTTAAACAAGAGTATAGTATAGAACAAGAGGAAACATCTTATGCATTAACTCCGAAATCTATTACCGTATCTCCTCAACAAATCAAAGAATCATCATTAAATGGAGTACGTTTCCCACGCATAGGTGTTATGAATCCTGAAGCATTTTGTGAAATGTGTTGCAAAGAATATtgcaacaaatattttcttcgttCACACAAACTCAAACGACACGGCATATTAATTACAGATAACGATAATTCTCCAAGTAGTACAAACTCAGGAATCACTTGGCATCAAATACAAACAAGTCCGTTAAATCTTATAATGACAGATAGTCTTGGAAACGGATCAGAATCTGGAGACCATACCGAGGAATACGCTTGTAGATCTTGTGGTATTCGTTTTCAGACGCAAGGTCTGTACCACTTGCATgttgaaaaaattcatgaaagtGCAGAACATTCATCGCCAAGACCGGAACCAGAAATTGATTCGACAGATCAACGGAATGATTCTATTTCTGAAGATCTTCAGAAGCTGCAAACAATGATTTTGCAATTAAATGGCTTAGAATCAAATAAAGCAGCTTCGTGTGCCCTTTGCGGTAAAGATTATGATACTCCGGGTGCACTGAGAAGCCACATGGTAGCAGAACATGGAGTAGTACCTGAAAACTTATCATCGCCACCGCAACTACAAATAGCGAACGAAAAGTCATCTCCTATTGCTACTATTGCtcaaataatatgtaatctGTGTGAAAAGGAATGCTGCAGTCAAGAAGCCTTAAGAAAACATATCGCGGAGGATCACCAACCATTGACGCCCACGAGTTCAACTCCTCAACTTCCATCTTCCGTCACGTCAACTCCTAAATCAAATTCATCCCAACAAATGGAACGAAAATCTATCCCTTCCATTACGCCGACTTCAAGTTACTGCGAAATCTGCAACAAAGAGTTGTGCAACAAGTATTTCATGAAGACTCATATGCAGAAGATGCACGGCATTGAGATCGAAAATGGTGCCCAAATTGGAGGCGTTATTTGTAACATTTGTAAAAAGGAACTCTgtagtaaatactttttacgaGTTCACAAACAAAATACTCACGGAATCGTTGAAGAAGGCGCTGCAGCTGGAAAGCAAGATAACTTCGAACCTCCACCAAACGCTGAAGACTTGGCTTTGAAGCCTGAGCAACTTGGCGATTTGAGTCTGCGTTACATTACTCACTTTACGGAAGTCTGTCCTATATGTAATCGGCGATTCCGCAGTCCCAAATGGCTTAAGGTTCATTTGCAGGGAGAACATGGTAAAGCTGGAATAGAAAAGTGGCGTGAAATCGAACAATATCAACAGTCAAGCCCAAAGATCCCTGCACGAGTCCCAAGCATTCCAAAGAGTACGacgcagcaacaacagcaaacACATGCAACTACAACTCTTAGGATACCAAACGGCTTTGAATCTAATCCACAAATCAGGGAAGATTTAGCAGTTCTAGGAAATCAAGTTCTTTCTAATTTCTTTGGTAATTCAAGCGATGATCAGCAAACGCAACCTTATCGTTGCTCGCAACTTCACTGCAATTTTTCCACGTCTATTTTGCCGCTCTTTTTTTTACACGAAAGATCTCATAACCATCACCAGGAAGTTGTAGCTATGGAGAACGAAAGAATGGTACAATGCCCAATTTGTGCCCAAACCTTTGCACAACCCGAAATACTTCGACAACATATAATAACTCGGCATCCAAGTCCATTTCCAGGACTCCTCTCACAATTTCCTATACCTCTACTCAGCGAGTTTAATTTAAGCAGCGATCATCCACCCCAATTTCAAGAAAGAAACGAGTACGTAGATTTAAAAGAAGACTTGCGCCAACCAAGTCCCCATATTATGAATGAGATCGACACGAATAAGATGAAGAAGCAGGAAGAAAACAATGCGGTCCAGGTAATGCCGCAAGGAGCGTACAAGTGCGCCCAGTGTGGCTTTGCCACGGCTAACCTCAATCGAATTAAGAAACACATAAGAAAAGATCATAAGAGTATAGGAGATCCAGCAGAAACGGCTCTCGCCGAGCTTACCAAAACACTGAAAGACGTGGCGAACAAACACAAAGTCCCAGCGAGCTACGCCATGCCGCAAGACGTCAATCTCACGCCCGACAAGACCATAATGCAGCCATTTATCATTGAAGAGCTGGAGAATCCGCAGAATGGTGGCAACGGCTGCACCGCTGAAGATACGAGTCCTGCATCGAGAAGATTTGCGCCAGCCCTCGTTTTTCTGCCGGTTAAAACGAGGGTCAGCGGCGCCCTCACTATATCCTTCACGCTGAATCCTGCCTGA
Protein Sequence: MSFSQETCLPDPAEIDSEGSSCEERESRRRLLGDPESLPKKRRKQSTPVKFSTSLTMGECDESEEESTEILGANNHDQHEYDQHRELEGKPTTSPDSKSIQSHPTIKDVNLNNEFRCQYCSQFFDSRVTLELHLECEHNFGFPSNNAALQQQQHQQGLSSSNDSPQIQNQERMSPETTGHSEQSISPINLSSISIRNFAASTSWLPGQGQMQTQNESSLAKIAARNNNHFQPMSAGFPGPLAQFLPMPGFPLPDSTQIQRAAMGQFPKIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDPPTTQSQGSDGAPSSPFITTSINTNTINNMPTNMSIKIVEHPPKIENNGIQQQLTVPCDICSKRFKNDDSLRKHKHKIHINPNNDAVDSTQIQITLPSSTEEERQSPGGMEALFKQEYSIEQEETSYALTPKSITVSPQQIKESSLNGVRFPRIGVMNPEAFCEMCCKEYCNKYFLRSHKLKRHGILITDNDNSPSSTNSGITWHQIQTSPLNLIMTDSLGNGSESGDHTEEYACRSCGIRFQTQGLYHLHVEKIHESAEHSSPRPEPEIDSTDQRNDSISEDLQKLQTMILQLNGLESNKAASCALCGKDYDTPGALRSHMVAEHGVVPENLSSPPQLQIANEKSSPIATIAQIICNLCEKECCSQEALRKHIAEDHQPLTPTSSTPQLPSSVTSTPKSNSSQQMERKSIPSITPTSSYCEICNKELCNKYFMKTHMQKMHGIEIENGAQIGGVICNICKKELCSKYFLRVHKQNTHGIVEEGAAAGKQDNFEPPPNAEDLALKPEQLGDLSLRYITHFTEVCPICNRRFRSPKWLKVHLQGEHGKAGIEKWREIEQYQQSSPKIPARVPSIPKSTTQQQQQTHATTTLRIPNGFESNPQIREDLAVLGNQVLSNFFGNSSDDQQTQPYRCSQLHCNFSTSILPLFFLHERSHNHHQEVVAMENERMVQCPICAQTFAQPEILRQHIITRHPSPFPGLLSQFPIPLLSEFNLSSDHPPQFQERNEYVDLKEDLRQPSPHIMNEIDTNKMKKQEENNAVQVMPQGAYKCAQCGFATANLNRIKKHIRKDHKSIGDPAETALAELTKTLKDVANKHKVPASYAMPQDVNLTPDKTIMQPFIIEELENPQNGGNGCTAEDTSPASRRFAPALVFLPVKTRVSGALTISFTLNPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01217020;
90% Identity: -
80% Identity: -