Basic Information

Insect: Pleistodontes nigriventris
Gene Symbol: -
Assembly: GCA_903653215.1
Location: CAHLDJ010002654.1:16204-19647[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.018 5.6 9.4 3.4 1 23 436 458 436 458 0.98

2 9 2.7e-05 0.0088 18.3 0.4 2 23 494 515 493 515 0.95

3 9 0.00027 0.085 15.2 3.5 1 23 521 543 521 543 0.99

4 9 0.00026 0.084 15.2 0.1 3 23 551 572 549 572 0.93

5 9 0.16 50 6.4 1.8 1 23 579 602 579 602 0.98

6 9 6.5e-05 0.021 17.1 1.2 1 23 606 628 606 628 0.97

7 9 0.0022 0.69 12.3 0.4 1 23 634 656 634 656 0.98

8 9 2.4e-05 0.0076 18.5 1.3 1 23 662 684 662 684 0.97

9 9 2.8e-07 9.1e-05 24.5 2.1 1 23 689 711 689 711 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.018	5.6	9.4	3.4	1	23	436	458	436	458	0.98
2	9	2.7e-05	0.0088	18.3	0.4	2	23	494	515	493	515	0.95
3	9	0.00027	0.085	15.2	3.5	1	23	521	543	521	543	0.99
4	9	0.00026	0.084	15.2	0.1	3	23	551	572	549	572	0.93
5	9	0.16	50	6.4	1.8	1	23	579	602	579	602	0.98
6	9	6.5e-05	0.021	17.1	1.2	1	23	606	628	606	628	0.97
7	9	0.0022	0.69	12.3	0.4	1	23	634	656	634	656	0.98
8	9	2.4e-05	0.0076	18.5	1.3	1	23	662	684	662	684	0.97
9	9	2.8e-07	9.1e-05	24.5	2.1	1	23	689	711	689	711	0.96

Sequence Information

Coding Sequence: ATGGAGCTCGAGGAGGATGAAGCGCAGATTTGCAGACTCTGTGGCCAATGCGAGAGCATTTATATTAACGTATTCGGCGAAGAAGGCACCAAACGTTTTTTAGGCTtcaaaatacattcaaaaattaacaTTCTGATAGATGAGAGGGATCCTCTGCCCAAGGCGATCTGTGTTCAATGTCTGGGCAAACTTGAATTTGTTTGCGACTTCCAAGAGGAGTGTCTGCGCACCCAGCAACTGTTACGCGATCAGTACAATCCACCTTTGTCAGATATTGAGGAAAACAAAGTTGAAGATTTGGCTCCAAGCACATCAACAAGCACTGAAAATGATACAATCGACAATAAAGGGAATGTCAATGGaagcaatataaataatgatagtaCCATTGataacaaaactattaataataataataataataataataataataataataataataatagtgataaaaaTCTTAATCCTCCAGAGAATGAAATGGTTAAAGATGAAAGTCGATCTACAAGGAATACTACAAAATCACAAAGAAATCTTCGAAGCCAGCAAAATCAAGTAAAGTCTAATACTAAAAAAGAGTCTTTGCAATCGCAGTTAtcaaataataacgaaaatttattagCAAGTATACAGCAGCCAGAAATAACAACAACTACACGCCGACTTAGAAGTAGACAAAGTGTAGAAGTATCAGAAATAgagataaattcaaaaaactcGAAGCGTGCCtctgtaacaaaaaaaagacTGAGAAGTCACAATAATACTGTAGATAGTACAACCAAttctaaagtaaattcaaacataataaatcagaattcaggaaagaaaaattatcaagtGGATCACAATAATAAGATTCAAATTCcaacaaatactttaaataaagtgTTGTCAGCTATAACTAATGCACCTGGTATAGGTGTTTCTGTCAAAGAATCCACAAATCGTAACGGTGATACTGAAGATATAAGTTTTACAgttgaattatgtaaaaaacagGCAACAGATTCTTTAACTGTATTAGCCAAAGTTTTTCCTGATCAAGGTTCTTGTTTAGTTGATAAATCAATTGTTACATTCCTAGAAGATGGAACTAACGAGGAGGTCAATAatcttgttaataatattgttagtcCCAATGCTTCAAAAGATGGAAACCATAGTTTGattgataaattacaaaatgctGAAGATATTACAAACAGTTCAAGGAATCCAGAAGAACTCTTTAAAATGGATGGTGAAGAAATTCATGTTGATGAAAAAGTTGAACAGGTTAATGTCAATAATCAAGTAAGTTATGCTTGTAAACTCTGTCGAAAAGTTTACGAACGCAAAGATAAATGCACTGTTCATGTAAAAACACATCTTGGTATAAAACAGTATATGTGTATCTTATGTCAAGCAAAGTTTGTTTGTAAATCTGATGTTATGAAGCATATACGATGCTCACACACTAACCCTCGACCAATTTCTTGTCCTAAATGCCCAAAAAGATTTAGATCAAAATTTGATCTTGCAGAACACAATAATGTACACAAAGGTATTAGACCTTATCAATGTGCAGATTGCGATCAAAGCTATCATCACAAAGTTTCATTACAAATGCATGTTAAGTCGCACATGCCTCCACAAAATTTAGCTTGTGAATACTGTGGTAAGGTCTTCCCCTATCGTACGAGATTGCTTAGTCACATTGGTAGTGTTCATATGAAAGACCGACGTAATTTTCGATGTCGTTTTTGTTATAATCTTTATTCAAGTTTATCAGTTTTAAATGAACATATAAAAACACGTCACACTACTACGTATACTTGTGAAACCtgtagtaaaacttttaaagtagCTTCTAAATACAAAGCTCATGTACTACAACACAGTAATCCAAAACCATTTGTATgtgatatttgtaaaaatagataCGCATCAAAAGCCTTTTTGAATGAACATGTATTAAAGCACCAAGGAGTGCGCAAGCATGTATGTCAAAAGTGTGGAGCAGCATTCGCACAAGCAAGCCATTTAGCCGCTCATCGCCACGTTCATGGAGAAAAAAGTCATGCATGTCCTGAGTGTGGCAAAATGTTTAATCGCCGAGACAACATGAAAGTTCATAGAAGAAGACACCTTATTCCAGGtggaaagaaaatgaatattaaacagaaaaatattttaagtaatgaaaatagaattatttctaatgaaaaatag
Protein Sequence: MELEEDEAQICRLCGQCESIYINVFGEEGTKRFLGFKIHSKINILIDERDPLPKAICVQCLGKLEFVCDFQEECLRTQQLLRDQYNPPLSDIEENKVEDLAPSTSTSTENDTIDNKGNVNGSNINNDSTIDNKTINNNNNNNNNNNNNNNSDKNLNPPENEMVKDESRSTRNTTKSQRNLRSQQNQVKSNTKKESLQSQLSNNNENLLASIQQPEITTTTRRLRSRQSVEVSEIEINSKNSKRASVTKKRLRSHNNTVDSTTNSKVNSNIINQNSGKKNYQVDHNNKIQIPTNTLNKVLSAITNAPGIGVSVKESTNRNGDTEDISFTVELCKKQATDSLTVLAKVFPDQGSCLVDKSIVTFLEDGTNEEVNNLVNNIVSPNASKDGNHSLIDKLQNAEDITNSSRNPEELFKMDGEEIHVDEKVEQVNVNNQVSYACKLCRKVYERKDKCTVHVKTHLGIKQYMCILCQAKFVCKSDVMKHIRCSHTNPRPISCPKCPKRFRSKFDLAEHNNVHKGIRPYQCADCDQSYHHKVSLQMHVKSHMPPQNLACEYCGKVFPYRTRLLSHIGSVHMKDRRNFRCRFCYNLYSSLSVLNEHIKTRHTTTYTCETCSKTFKVASKYKAHVLQHSNPKPFVCDICKNRYASKAFLNEHVLKHQGVRKHVCQKCGAAFAQASHLAAHRHVHGEKSHACPECGKMFNRRDNMKVHRRRHLIPGGKKMNIKQKNILSNENRIISNEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00464193;
90% Identity: iTF_00464193; iTF_00708717;
80% Identity: -