Pnir048892.1
Basic Information
- Insect
- Pleistodontes nigriventris
- Gene Symbol
- -
- Assembly
- GCA_903653215.1
- Location
- CAHLDJ010004125.1:8184-13754[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 8.4 2.7e+03 1.0 6.0 2 23 254 276 253 276 0.96 2 17 0.28 90 5.6 5.8 1 23 326 348 326 348 0.97 3 17 0.0005 0.16 14.3 0.3 1 23 397 419 397 419 0.97 4 17 2.1 6.6e+02 2.9 1.0 1 19 472 490 472 493 0.82 5 17 0.0017 0.53 12.7 0.1 1 23 530 552 530 552 0.97 6 17 0.00033 0.1 14.9 0.1 1 23 558 580 558 580 0.97 7 17 0.00011 0.036 16.4 0.7 2 19 662 679 661 684 0.89 8 17 0.00029 0.092 15.1 1.5 1 23 715 737 715 737 0.93 9 17 0.096 31 7.1 0.0 2 20 795 813 794 813 0.95 10 17 0.00063 0.2 14.0 0.2 2 23 832 853 831 853 0.97 11 17 0.00092 0.29 13.5 3.8 1 23 879 901 879 901 0.97 12 17 0.012 3.7 10.0 3.0 3 21 922 940 921 944 0.89 13 17 0.069 22 7.6 0.2 2 23 1003 1025 1002 1025 0.94 14 17 0.011 3.4 10.1 2.9 3 23 1055 1076 1053 1076 0.89 15 17 0.002 0.64 12.4 0.9 1 23 1083 1107 1083 1107 0.93 16 17 0.065 21 7.7 2.0 1 23 1112 1135 1112 1135 0.94 17 17 0.0075 2.4 10.6 0.3 3 23 1167 1188 1165 1188 0.95
Sequence Information
- Coding Sequence
- ATGGACGACGTCGTGGAGATCAGCGGCTTGGAGAATGCCTGTAGGTTGTGTCTTACCACCGAGCAAACGAGGTCGTCGATTTTCGGCGTACCGCACGTATCCGTGCCCTTCGTCGACAAGATTCGTTCATGCTTGTCAATACAGatCTCATCCAATGATAAATTGTCAACTCTAGTGTGTACgaattgtatcaaaaatataaatcaatggCATTCTTACAAAGATACATGTCTACGGTCTCAGGAGAAATTACAGCAATGGTTAGCAAAACAGAATACAATTGTTCAAccAATGGTAACTGTGAAAGAAGAACCAGTAGATGTAGAATTTCCAGATGACAATCCACAGATAGTGACAAATGACACCAATACaaaTAACCATATTGCTTCAAATAGTAAAAGTATGGATATTGATAGCGAATGTAATGTTATGCCAGTTATTAATAAAGTAGTTCAAGCATTACCGGAAGAACttccaaaaattaatgaaaaaatagataaagatcactcttcaataattcaaattaaaagtgaaCCTGTAGATACAGAAGATGAAGATGATTGTAATATAGATGTTGAATCTGTTAACAGTGGAGAACTGTTAATCAATCCAATGGCAGTAGTgggtagtaatggtagtaatgaTAGAATAATGGAGGCTGATTCAACTCAAAAATTTAGTACAAGGAGGTTCGGGACGAAAAAAAGAATGCGTCGTGGTCCTCATACGCATTACAGGGGTATTCGACTGTTTAAGAAAAAGTGTGTTCactgtaaaatttatcttcattCTAAATACTCATATAGTCAACATATGTCCAGATATCATggaattgttaataatttacccAACAATACAGAATCTGTTTCAGATACACAAACTGAAATTAATAACGAAGACCTAGAATTCGAAAAGATGATCAAAACTAATCCTCTAATACCAGTTCAAAAGACGATCATTAGTCAACTAAAGACCTTTTCTTGTTATTCATGCAAACAAACCTTTTTTGATCGAAGACATACTTTGAATCATATCAGACAGCATATGCCTGACTTACGCCCATTCACTTGCATTGCTTGTCTTACTGAATTTTCAGACAGGTCCATGTATAAGCTTCACTGCGGAGCTTCGTTTGAGTGTGCGATGAAAATAGCTCTTGTAGTTCCAAAAGTGGGTAATGAGAAATACTTTACCTGCAATATGTGTCTTCGACCATTTGATAATCGAAAGGAACTCCTCACGCATTTAGCTATACATGCTGATAAGCAGTACCAACAAATGGCTCAACCCTTACGATCGCCACCGaaattacaatcaataaatCCACCCACGCCAGCTCCTAAGGTGGATTCTACACCTGCTAAGAGACCCACCGTATCTGGACCTTACATGAATGGTGACCCAGCCCATAATCATATGTGCGATTTGTGTGGTATGATTTACAGTCATCATGAAACGCATCGTGTTCATGTTGATAAGGAAAAcgtaaatgaaactttaaacgAGCAACAGCCGGATAACGAGTATTCTATGGTCGTTGATCCCTTGAATTCGTCGACACATCCTATGGACGTAAGCGAGAAGCCTTTCAATTGTGCCCTTTGCGGTGAGGATTTCGTTACGAAGATCGAGCTCAGCGAGCACCGTAACCTGCACCTCAAAGTTAAGATCTATTCGTGTGTTATCTGCCGTAGCATGTTCAGTAGCTCAGGAGCTCTAGAAGTGCACATGAAAGACCACGGAATCGAAGATCCAGGCGAGCAGAATGCCAACAGCTCTTGTGTCGAATATGGACGTGAAAGTCGTTCTCAGACTTCAATGAATGATTCTTCCGCATCAGATCCTGGTGGATGTTTCCATCACTGCCCTTATAATGAACACGTAAGGACGGAGCACAGGCCAATGCAGCAGCAACAGCATACTGAAAAAATACCGGCACCACCACAACCTCAACTATCCTCGACTACTGGTAAACCACTGATGCAGTGTCCAAAATGTCCTAAAACCTTTGCTTATCAGGGCAACCTCATCGTTCACTGTCAGAACGTCCACAAGGAGAATCACTTTGAGCGTGCACGAGCGAACGCAGCGCGTCCCGCAGCTCCTCCTCCTCGACCTGCTTCTACTCTCACGCCATGGGGCCACTCCTGTGATCTTTGTGGTAAGACTTTTCGAGAGGAGCAGTCCCTCAAGACCCATCGTGGCTGGCATCTACGTTCCACCTATCGGCTCAAAGTAGACAAGAATGCAAGTTTAGATGAGACGACGCTCAGTGGTCCGGGCTACACAATGACGATGACGAGTTCATCGAAGCCTGCCAAGGCGCGCAAGTCTTTCCCTAACAACCCGCCTCAAAAACAGCTCAATGCTATCACTAGTCTGCAGTGCCAGGTCTGCGACGATCGCTTTCCAGACGTCGCAGAGCTGAGAAAACATCTCTGGGATGTCCATTGTGCCCGTAATAAGCCTGAGAAATCATTCACGAGTGAACTGCAGTGCGAACTTTGCACCAATAAGTTCCCCGACGAGGAGTCCTTAGAGAACCACATGAAGTGGCATTCGCAGAACCCGATCCTTGGTGGAAAAAGTACGAGCGGGGACAGTAACATCAGCCTCGAAGTTCCGACCAAAACATTTTACTGTGACACCTGCGGGAAATATTACAGCAATCGCAAGCTCTTTCTGCGTCACAAGAAGCTTCACAAGGTTTTACCCGTAACGACGATGATGAACCTTCAGTCACTCCAGACGAAGCGGCCCTTCTGTCAGTCCTGCCAGAAGAGTTTTTCCACGGACGCATCCCTTAAGCGACACAAGGCATCACCCTGTCATCACAGTGTTGTGCGCACCCAGAGCCAGCATGGCCCCAAGAAGATAACGACGACGGCGCTGGTTCACCATCCTCCTTCGGAGCCGGTAAGGCTGCAGGCAGTCAAGAGAGAGCCGGGTCTCGAGTACACGGCCACGGGTCACACAGGTGTGCCGGTCACGAGGAAGAAACCGGTCACCTGCCTAATATGCAAAACCATCTTTCCCAACATGAGCGTGCTCTACAAGCACAAGCAGCTCGTACACAAGCTGCCGACCAGCGGCAGGGATAGGGCCAACAGCCAGCAGCAGGCCGAATGCGTGCCGCTGGTGAGTGCCGAGGGCCTCGTTTGCTGTAACCTCTGCGGCAAACAGTTCCCCGGCGTGTCGAACCTTAAACAGCACTTCGCTCACAAGCACAAGGCCAAGAACGCCACCTTCCCCTGCAGGTCACCAGGATGTAAGCTCGTCTTCAGTAGCGCCCACTCTCTCAAGAGCCATGAGACGACGCACTCGAGTATGATCTACAACTGCCATTTGTGCGACGGACACGTGTTCTCCAGGGCCGCCATGACTAAACACATGATAACCATGCACAAAGCGATTTATCAGTCGGGGGCGAGCAAGAGCAGCCTTTGGTCCGAAACCGACCTAACGACTTATAACGTGAAGAATTGCCAGAGTACGGCCTGCCCCAAGTGCAAGATTAAATATCCCAATTTGAGAGCGTTGAAGATTCATTATATTAAGTTCCACGAAAAAACATAG
- Protein Sequence
- MDDVVEISGLENACRLCLTTEQTRSSIFGVPHVSVPFVDKIRSCLSIQISSNDKLSTLVCTNCIKNINQWHSYKDTCLRSQEKLQQWLAKQNTIVQPMVTVKEEPVDVEFPDDNPQIVTNDTNTNNHIASNSKSMDIDSECNVMPVINKVVQALPEELPKINEKIDKDHSSIIQIKSEPVDTEDEDDCNIDVESVNSGELLINPMAVVGSNGSNDRIMEADSTQKFSTRRFGTKKRMRRGPHTHYRGIRLFKKKCVHCKIYLHSKYSYSQHMSRYHGIVNNLPNNTESVSDTQTEINNEDLEFEKMIKTNPLIPVQKTIISQLKTFSCYSCKQTFFDRRHTLNHIRQHMPDLRPFTCIACLTEFSDRSMYKLHCGASFECAMKIALVVPKVGNEKYFTCNMCLRPFDNRKELLTHLAIHADKQYQQMAQPLRSPPKLQSINPPTPAPKVDSTPAKRPTVSGPYMNGDPAHNHMCDLCGMIYSHHETHRVHVDKENVNETLNEQQPDNEYSMVVDPLNSSTHPMDVSEKPFNCALCGEDFVTKIELSEHRNLHLKVKIYSCVICRSMFSSSGALEVHMKDHGIEDPGEQNANSSCVEYGRESRSQTSMNDSSASDPGGCFHHCPYNEHVRTEHRPMQQQQHTEKIPAPPQPQLSSTTGKPLMQCPKCPKTFAYQGNLIVHCQNVHKENHFERARANAARPAAPPPRPASTLTPWGHSCDLCGKTFREEQSLKTHRGWHLRSTYRLKVDKNASLDETTLSGPGYTMTMTSSSKPAKARKSFPNNPPQKQLNAITSLQCQVCDDRFPDVAELRKHLWDVHCARNKPEKSFTSELQCELCTNKFPDEESLENHMKWHSQNPILGGKSTSGDSNISLEVPTKTFYCDTCGKYYSNRKLFLRHKKLHKVLPVTTMMNLQSLQTKRPFCQSCQKSFSTDASLKRHKASPCHHSVVRTQSQHGPKKITTTALVHHPPSEPVRLQAVKREPGLEYTATGHTGVPVTRKKPVTCLICKTIFPNMSVLYKHKQLVHKLPTSGRDRANSQQQAECVPLVSAEGLVCCNLCGKQFPGVSNLKQHFAHKHKAKNATFPCRSPGCKLVFSSAHSLKSHETTHSSMIYNCHLCDGHVFSRAAMTKHMITMHKAIYQSGASKSSLWSETDLTTYNVKNCQSTACPKCKIKYPNLRALKIHYIKFHEKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -