Pnir045293.1
Basic Information
- Insect
- Pleistodontes nigriventris
- Gene Symbol
- -
- Assembly
- GCA_903653215.1
- Location
- CAHLDJ010000059.1:134905-142765[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5.1e-05 0.016 17.4 3.4 1 23 339 362 339 362 0.97 2 11 3e-05 0.0097 18.1 0.1 1 23 368 391 368 391 0.94 3 11 0.001 0.34 13.3 0.3 1 23 400 423 400 423 0.95 4 11 1.9e-07 6.2e-05 25.0 3.6 1 23 429 451 429 451 0.98 5 11 4.5e-06 0.0015 20.7 1.0 1 23 457 479 457 479 0.98 6 11 0.0026 0.83 12.1 7.9 1 23 485 507 485 507 0.96 7 11 9.5e-09 3e-06 29.2 0.7 1 23 513 535 513 535 0.99 8 11 3.3e-05 0.01 18.0 7.6 1 23 541 563 541 563 0.98 9 11 9.2 2.9e+03 0.9 5.3 2 23 570 591 569 591 0.95 10 11 2.1e-05 0.0067 18.6 0.8 1 23 597 619 597 619 0.98 11 11 3.2e-07 0.0001 24.4 1.5 1 23 625 647 625 647 0.98
Sequence Information
- Coding Sequence
- ATGGCGAAGATTCGCTTATACGATTCGACAACTTGCCGTTTGTGTGCGGAAAACAACGACAACGGCGAAATGTTATTTACCGATGACTCCGAGGAAACAGAGTTAAGCGCGATGATCAACCGTTATTTGCCGCTTAAGgTTCATGATGATGGTAACTTACCACGTACCATATGCCCTGGATGTAATATTCAATTGGAAGCGACTGTACAATTTTTTGAGTTACTTATTAATGGTCAACATAAAATTCGAGAAATGTGGAAGCAACAAATTGAATTTGAACGCAGAATTGAAAGAAGTcgtcttaaaaaaaaaagcattaatataactttagaaaattctgaattattcaGTGCAGAAGATGAAAATTCAGTTTCAGAATCCAATCgacaacaaattattattaatgtcatGCCTGATGGTTCTGTTTATGCTGCTGAACATGATTTAAGTTTACAAATGCAAGGATTAGATAAACCTAAAAGGAAACGAGGTCGCCCACCAAAAACTTCATCAGaagaagaattaaaagAAGTTGAAAAAGATGAATGTAATGAAGGAATAAGTCAAGAAGAAGAAGATAAGCAAGATGAAGAATTTGATAAAGATGGAAGACAAAGGAGAAAACGTAAAGTTCCTAAGAgGTACATGGAAACTGTACAAGGGAAAGAATTAGAAAAGATGTTTAAAGAAGAAGGTGTTTTTGATGAAGATGAGATACAAATAAAGTATGAAGcagatgaaaatttaaacatttcaagTATAGACAGTAGTAATAGTGACAcagaaataattggtCATTTGGAAACTATAGAAGGAAAAAATTTGGaGTTAGTAAATACGGTTGAACCATCTACATCTACAACAACTTCTTTAACAACCTTACCTATCGatgataaatctttaaatactgtacaaaataatgaattaaaagatattgGGACTGAAAATCAAGAAGATGCAAGTAGGGAAGAAGAATCATCTCATGATTCTGAATCTAAAGATActgacaatatatttaaatgcgaAAAATGTAGTAAACATTTCCAATcaaaaaacaatttagaaaCCCACGTGAAAGTAGTACATCAAGGAGAAAAACCTTTTATATGTGAAATTTGTAACAAGGCATTTGCTTATCAATCAAGTTTAAAAGGACATAAGGAAATAGTTCATCagaataataaatcagATAAAGGTTTTCCTTGTGACATATGTGGAAAAGTTCTCAATCATCCAAGTTCAataatgtatcataaattaagTGAACATAACAATGGTCGTCGCtttgtatgtaataaatgtggcaaaagttttaaacataaacAGTTATTACAGCGACATCAACTTGTTCACTCAGAACATAGACCATATCCATGCAAATCTTGTAATGCTTCCTTCAAAacaaaagcaaatttattaaatcatcaaTCAACTCATACTggagaaaaaaaacatttctgtGAACTTTGTGACCACAAATTTGCTCATAAAACAAGTCTTACTTTACATTAtagaacaCATACAGGTCAGAAACCATACAAATGTGAAGTATGTTCAAAAAGTTTTTCTCAAAATGGTAATCTGCAAGAACACATGCGTATTCATACAGGTGAAAAACCGTACTGCTGTGATCACTGTGGTCGTAAATTTACGACTTCATCGCAATTTAAGTTGCATGTAAAACGGCATACAGGTGAAAGACCATGGAAATGTGAATTTTGTGCAAAATCATTCTTGCATAAAGATACATGGAAATGTCATGTTCGTAGACATACAGGCGAACGTCCATTTCAGTGTGCGTACTGTAGTCGTGATTTTACAGAACAATGGGCTCTAAAAAAACATTTGCGACTTCATACagGAGAAAAACCATATAATTGTGAAGTTTGTGGAAAAGCATTTGCTGATTGttcaaatttaacaaaacataaaaaggtgCATAAAAATCCTGGAGATGTTAGTGATTTACGAATTGGAGAAATTTGGCAAATTTTACCAAATTCTCAAGAAGAAAATGCAGCTACACTCAATAATTTGACTCAAGTTATGACAGCAGATGAAATTTCTGAAGACGATATgtcacaaattatttatgtggCTTACCAAAATTCAAATCAATCCGATGAATCACCTACATTACAACttaataaagGAAGTATAATAGCTGGCcaagaatcaaatttaaatacaacaatGAATAGTGAAGATTCAAATACTATAGATCTTGCAAATGAGTCTGATTTACAACTTCAAataacagATGAAGATGGTAATGCCATTCCGTTATCACTACAAGATGCGCGTCAATTATTTTCTGAAGGTCAATTTGTTAGTCAATTAAATGGAAATCAAACAATAAGAGTTCAAAATTTACCGGCATCATTAGGGATAACTTCAGATATTGAAATTACACCGCTTTCTGCAAAAGAAAATACCgaatcaaaaatttcattagcaTCAACAATTCAAACAGATGCTGAAGCTATAGTAAAAGTCTTAGAAgaTGAAGATACTGATGCTACAGCTGTTGCAGCAATTAATCAAATGAATGCAGAAGATCGTCTGGAATTAGCTGATGGCCAGCAAGCTATAGAATTCATTACTCAAGATGGACAGAAAGTACGACTAGTGACTTCTCTAAATATAGATCCATTACAATTAGCCTCGGAGTACCTGactatagtttaa
- Protein Sequence
- MAKIRLYDSTTCRLCAENNDNGEMLFTDDSEETELSAMINRYLPLKVHDDGNLPRTICPGCNIQLEATVQFFELLINGQHKIREMWKQQIEFERRIERSRLKKKSINITLENSELFSAEDENSVSESNRQQIIINVMPDGSVYAAEHDLSLQMQGLDKPKRKRGRPPKTSSEEELKEVEKDECNEGISQEEEDKQDEEFDKDGRQRRKRKVPKRYMETVQGKELEKMFKEEGVFDEDEIQIKYEADENLNISSIDSSNSDTEIIGHLETIEGKNLELVNTVEPSTSTTTSLTTLPIDDKSLNTVQNNELKDIGTENQEDASREEESSHDSESKDTDNIFKCEKCSKHFQSKNNLETHVKVVHQGEKPFICEICNKAFAYQSSLKGHKEIVHQNNKSDKGFPCDICGKVLNHPSSIMYHKLSEHNNGRRFVCNKCGKSFKHKQLLQRHQLVHSEHRPYPCKSCNASFKTKANLLNHQSTHTGEKKHFCELCDHKFAHKTSLTLHYRTHTGQKPYKCEVCSKSFSQNGNLQEHMRIHTGEKPYCCDHCGRKFTTSSQFKLHVKRHTGERPWKCEFCAKSFLHKDTWKCHVRRHTGERPFQCAYCSRDFTEQWALKKHLRLHTGEKPYNCEVCGKAFADCSNLTKHKKVHKNPGDVSDLRIGEIWQILPNSQEENAATLNNLTQVMTADEISEDDMSQIIYVAYQNSNQSDESPTLQLNKGSIIAGQESNLNTTMNSEDSNTIDLANESDLQLQITDEDGNAIPLSLQDARQLFSEGQFVSQLNGNQTIRVQNLPASLGITSDIEITPLSAKENTESKISLASTIQTDAEAIVKVLEDEDTDATAVAAINQMNAEDRLELADGQQAIEFITQDGQKVRLVTSLNIDPLQLASEYLTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01524174;
- 90% Identity
- -
- 80% Identity
- -