Pnir025099.1
Basic Information
- Insect
- Pleistodontes nigriventris
- Gene Symbol
- -
- Assembly
- GCA_903653215.1
- Location
- CAHLDJ010004514.1:12757-25241[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.027 8.6 8.9 2.1 1 23 72 94 72 94 0.97 2 18 0.065 21 7.7 1.3 2 23 139 160 139 160 0.94 3 18 0.0055 1.8 11.0 1.2 2 23 222 243 221 243 0.97 4 18 4.1e-05 0.013 17.7 3.6 2 23 296 317 295 317 0.97 5 18 0.00028 0.089 15.1 7.0 1 23 322 344 322 344 0.97 6 18 0.0026 0.82 12.1 0.4 1 21 351 371 351 375 0.92 7 18 0.00057 0.18 14.1 3.7 1 23 454 476 454 476 0.97 8 18 0.00041 0.13 14.6 4.5 1 23 521 543 521 543 0.96 9 18 0.00019 0.061 15.6 0.7 1 20 548 567 548 569 0.94 10 18 0.026 8.2 8.9 0.3 2 23 580 601 580 601 0.97 11 18 8.8e-06 0.0028 19.8 0.7 2 23 639 660 638 660 0.97 12 18 1.3e-05 0.0042 19.3 1.3 1 23 665 687 665 687 0.95 13 18 3.2e-05 0.01 18.1 1.9 1 23 693 715 693 715 0.98 14 18 3.1e-06 0.001 21.2 0.4 1 23 731 753 731 753 0.95 15 18 2.5e-07 8.1e-05 24.7 0.6 1 23 759 781 759 781 0.99 16 18 1.2e-05 0.0039 19.4 0.2 1 23 787 809 787 809 0.98 17 18 0.0001 0.033 16.5 4.1 1 23 815 837 815 837 0.96 18 18 0.0072 2.3 10.7 0.4 1 20 843 862 843 864 0.89
Sequence Information
- Coding Sequence
- GAGATAGAAAAAGACAATAAAGAAGGCGTAGAAAGccaacaaatatataatttaccaGAAGAAATATCGATTGAATTAACTCGTAGAAGTAAACGCAAAGTTAATCAAAAAAAAGCTCTCATTGGTGAGGATTTTAATGAAGACAATTATTTTGAGAATCTTAATCTCAGCTCTAGATTAAAGGTCCAATCAGACAAAtcagaaaagattttttttatatgttatttgtGTGATAAACAATTCTTGTCAAAGGaagttttaaaagaacataTGCATTCTCatgaagaaataagaaaaactctTTCTTTCGTAAAAAATACAGTGGAGAACTTAGAAAAAACATTGGAGAAATCTGAAAGTACCTCTACAAATTCGATTCCATTGAAATCACCTTCGAGTGGAAAACATCCAAACACTTGTCCTCATTGTGGAAaagaatatctttatataatatcatacaACAAACATTTGAAACAACATGAAAAGAATGAGATGAAAGAGGAGCTTATGCctttagaaatttcatttcatgAGGATGACAATGCGTTGAATTTTCACGGTTATAATGATAACACTTCAGTGAATTCTGACAGtgaagaaaatgagaaaaaagacgataaagaaatttacaagaaaaaggAATTTAAGAAACGTAATACCATAAAGTGTAATACTTGTGAGGAAGAATTTGATACAATTAACAAGTTAAGAAATCATCGATCAAAGCACGTCATTGAAGGTGTATTAAGCGAACAGGATCTAAAAAATGACACGGACCAGTTCAATATtcaagaaaaatttatcaaatataaagatGACAATGAAAAATCCAATGTAGATGAATTACTCGAATTGCCGATGAAGCAAGAAGAATCGAAGAATTTAAAATGCCCTCACTGTTCAATGAGCTATTCTCACAAAAAATCTCTTGCTAGACATATAGAGAGCCATTCTGGTACCAAGTATACTTGCAAGCTTTGCCAAcaaaattttagtagaaaagATCATTTGCATCGACATACGGAGCAACACGGTGGTCgacttaaaaatttcagatgTACGCaatgtaataagatttttgGTAATGAATTAACTTTAAGAAGTCATTTAATAGCGACGAGTCACAAAACAATATTGCATGGGAAAGAGTATGATCCAAACAAAAGGGTAAAAAGGGTGGCTGCTAGAGCAGCCCAGAAAATCATTGATCAGATCAAAACAGATCTCAGTCTTGATGAATTTGAGGAGGACGAGCGAGAAAGGGAAAGAGATAAAGATTTTGATGGAATCAAAACAGAATTTTGTATACCAAAGGATGATCATacggtactgaaaaaatttcaacGCAACTCCATGAACTTTTATTGCGCGACCTGTAATCAAAAATATGCTTCGAAACATACTCTCACTAAACATATGGAGCAGCATGTAAAGgatgaaaatatgattaaacaagaaaaaataaaaaataacgatgaGTACCAAGAGAACCAGGAAAACGAAGACAATGACGGCGAAGATGATGATTTTGAGAGTGGTCTCGATTGGCCCATTGACAGTCATGAGTGTCTAACCTGCAAAAAACGCTACAGTACAAAAAAGTCTCTGCTGCGTCATCAATTACTACACGAAGAGCCAAATTTCGAGTGTGATATTTGCAATGTCAAGTTTTATAGAAAGGATAAATTAAAAGCCCATTACGATAAATGCTCGGAAAAGAATCCTGATCAAGTGCGTAAGTGTAATATTTGTGGTGATAGCTTTGAAAATAACGAAATCTTAAGGGAGCATAGAATAAAACATGTAACAGAAGGAATACTGACAGAAGAGGATCTTCGGGAAATTGAGCCACGACCGGAAGACAAATGTGAGGAAAAGGCACCACGCAAAAGACGAACGGATATTGTTGGTCTTGAATGTACGGAGTGTAATAAGCGTTACACATCTAGAAAAGGACTGTTAAGGCATATACagGTTCACGAGGGGAAAAAGTATCTTTGTGACATCTGTCCAAAAAAATTCTACAGGAGcgagcatttaaaaattcatgtggCAAAGCATAACATGATCAAGCCATACAAATGTCCTCGATGTACAAAAAGATTCATAAAGgaagaacaattaaataatcatcTCACCAAGCATGacagaagttttaaaaaagtgaaagaagCTGATActtcaaaaagatttttgtgCGAAATTTGTTCGAAAAGTTTCACTCAGTCTACAACCCTCATAGCGCATTTGCGGGCTCATAACGGTATTAAGCCTTATGTTTGTGAGGTATGTTCGAGACCTTTTACAAcaaatgcttatttaaaaatgcatatgaGGACACATACACAGGAACGGCCTTATATTTGTCAGTACTGTTCTAGAGCATTTGCTCGTGCTGATACTTTGGCTAATCATTTAACAACACATACTGGGGAGGCCAAGTATCACTGTAAATATTGtccaaaaaattttagaagactTAAATCTCTTAAAGAACACGTTTTTATACATACTGGACAACGACCATATGCCTGCCCAACATGTGACAGGAGGTTTAATAACAATGGTAGTAGATATGCACACAGTAAGAGGTGCAAACAAAATGCGCTGCAGACTAGAGCTACCTCACTTAGTACACAATTCCTTAATATCGAACCTGACCGTGATCAACAAGAACAGGATCAACAAGAATTACAGAATCAGTTACAATCTCAAAGGTTACATCAAGCTACAATTGGCCAAGCTCAGATAATCAAACCGCAGAATATCAAAACTATCACAATTACAAGACCGGACGGTGGTCTTAATCAACAACACGTTATGGCACACCAGGAAATTCTGATGCCTCTGATATTACCTCTTACAGTCACCCTCACTGATGTTGGAGAAGAAGTTATTCTCCCCGaaggaacaaaaattttcactaCGTAA
- Protein Sequence
- EIEKDNKEGVESQQIYNLPEEISIELTRRSKRKVNQKKALIGEDFNEDNYFENLNLSSRLKVQSDKSEKIFFICYLCDKQFLSKEVLKEHMHSHEEIRKTLSFVKNTVENLEKTLEKSESTSTNSIPLKSPSSGKHPNTCPHCGKEYLYIISYNKHLKQHEKNEMKEELMPLEISFHEDDNALNFHGYNDNTSVNSDSEENEKKDDKEIYKKKEFKKRNTIKCNTCEEEFDTINKLRNHRSKHVIEGVLSEQDLKNDTDQFNIQEKFIKYKDDNEKSNVDELLELPMKQEESKNLKCPHCSMSYSHKKSLARHIESHSGTKYTCKLCQQNFSRKDHLHRHTEQHGGRLKNFRCTQCNKIFGNELTLRSHLIATSHKTILHGKEYDPNKRVKRVAARAAQKIIDQIKTDLSLDEFEEDERERERDKDFDGIKTEFCIPKDDHTVLKKFQRNSMNFYCATCNQKYASKHTLTKHMEQHVKDENMIKQEKIKNNDEYQENQENEDNDGEDDDFESGLDWPIDSHECLTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRIKHVTEGILTEEDLREIEPRPEDKCEEKAPRKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRSEHLKIHVAKHNMIKPYKCPRCTKRFIKEEQLNNHLTKHDRSFKKVKEADTSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTTHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNALQTRATSLSTQFLNIEPDRDQQEQDQQELQNQLQSQRLHQATIGQAQIIKPQNIKTITITRPDGGLNQQHVMAHQEILMPLILPLTVTLTDVGEEVILPEGTKIFTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -