Pnir053117.1
Basic Information
- Insect
- Pleistodontes nigriventris
- Gene Symbol
- -
- Assembly
- GCA_903653215.1
- Location
- CAHLDJ010000365.1:15183-19596[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00083 0.26 13.6 0.1 1 21 63 83 63 84 0.95 2 13 8.7e-07 0.00028 23.0 0.5 1 23 162 185 162 185 0.96 3 13 0.00027 0.086 15.1 3.6 2 23 192 214 191 214 0.95 4 13 3.3e-05 0.011 18.0 3.8 1 21 221 241 221 242 0.95 5 13 1.2e-08 3.8e-06 28.8 1.8 1 23 253 275 253 275 0.98 6 13 2.1e-05 0.0067 18.6 1.0 2 23 285 306 284 306 0.97 7 13 0.013 4.2 9.8 0.4 2 23 313 334 312 334 0.96 8 13 1.2e-06 0.00038 22.6 2.5 1 23 340 362 340 362 0.99 9 13 8.4e-06 0.0027 19.9 2.6 1 23 368 390 368 390 0.95 10 13 1.5e-05 0.0049 19.1 1.4 1 23 396 419 396 419 0.94 11 13 6.8e-08 2.2e-05 26.5 1.1 1 23 425 447 425 447 0.98 12 13 3.1e-07 9.8e-05 24.4 3.6 1 23 453 475 453 475 0.98 13 13 6e-06 0.0019 20.4 0.9 2 23 482 504 481 504 0.95
Sequence Information
- Coding Sequence
- ATGGGAGAAGTCATAGaaATTTTGAAAGTGGAAAGTACTTACTTGCCGCAAGATGGTATAACTGAAGTTGTTGTTGcTGATCTAttggtaaaaaattcaaatgaagatacatttattatacctGACATAATAAATACAGGAGAAGttcttACAGAAAATGgacaaattatacaaattattggaGATTATGAATGTGTCACTTGTCATCGTATTTTTCCAAGTGAAGACatGTTAAAAGAGCATTTACAAGTATGCAGAGAAGATGATGACACTGATATAATAGAGTTAGGTAGAATGGCAGATTTAGATTCAGAGGACGAAGATGAAGGCAATATTGATGATCCagattataatacatattcaaGTCCATCAGaTTCTCAGAgttcaaagaataataataaaaaaatagcaattaagCCTGTAGCAGAAGATCAATGTCATTGTTGTGCTGAAGATTTGAAAACAGCTCATTCTGGTGGTTCTTTTAAATGCTCAAACTGTGATATGTCATTTAAAAAGGCATCTTCTTTAGAAAGACATTTAATTGTCATTCACTGGGAATCTGATTCGTGTACCTGCAATGACTGTGGCTCAACCTTTCGTGATAAGAAAGCATTGGATAAACATCGCTATACAACACatatgaaaactaataaagtATACAGGTGTGATAAATGCGACACTTATTTTTCAAGAAGCTACCATTTAAATCGTCATAAACAACAATCAGGCTGCCATGGAGACACTAGTAATAGTTTCTCATGTCaggtttgtaataaagtttttactcGTAAAGATAATTTACGAGAACATTTACGAACTCATGCTGGAATGccacaaagaaaaaaaaaatcttgtcaGCTTTGTCCAAAGCAATTTTATACTAAtcaacaattaataattcatcaaCGTATGCATACTGGAGAGAGACCAATAGAATGTGATTTATGTCCTAAGacttttttatctactttagcTATGAAAAAACATCGTAGGGTTCATACTGGAGAAAAACCATTCGAATGCAAAtattgtcaaaaaaaatttgctgCAAGGGAAACATTAAATCGTCATCAAAGAACGCATACTGGAGAGAAGCCTCATGTATGCCAATATTGCAATAAATCGTTTATTCAAGCAGCTCAATTAAGGGCACACATATTTCATCATACAGGAGAAAATGGTTTTTATTGTGATGTTTGTGGAAAAGCTTTTAATCGCAAGGCACGTCTtactaatcataaaaaatttgttcatgaAGGTGCTACACcatttaaatgtgaaatatgTGAAAAGTCTTTCACGCGAAAAGAAGATTTATCCAAACACATAAATTTACATGCTGGAATCAAACCTCATAAATGTGACACCTGCGGAAAATGTTTTGCCGCTAAGTCATCGTTACAGGCTCATATGAATACTCATAGGCGAGAGCCACCACAATCCTGTGCTGAATGTGGAAGAGCATTTATTCGTCAAGATTGTCTTATGCGACATATACGTGCAAAACATAGAGATCTTTTAGAAGATGTACTCGGAGAAGCAGAAAAAAAACACTTAcaattacaaatgtttaatattgCGTATACTGCGgctgaaaaaatgaaaacggGAGAAACAAACATTCTTTCaacaaatgaattattgaaagcTATCACAGAACTTTTAACCGTTCttatagaaaaagaaacttTAGAGttatttggCTGGTTACAATCACCTTTACAAGATGTTTTAGAAGCTGTTATTCGCAGGTGTGGACATGAACCACTTACATCAGATAGTGATTTGTCACTTTCGGAAAGATTACGaggaaatgttaaattattatttaatgctgTTATTGAAGATGAAAATGTAAAGTCCTTATTAACGACGCAAACTGTTGATGAAGTGATCATGCACGTCCTTAAGTTgtcaaaaaataacaaaaaaactgaagaaaaatag
- Protein Sequence
- MGEVIEILKVESTYLPQDGITEVVVADLLVKNSNEDTFIIPDIINTGEVLTENGQIIQIIGDYECVTCHRIFPSEDMLKEHLQVCREDDDTDIIELGRMADLDSEDEDEGNIDDPDYNTYSSPSDSQSSKNNNKKIAIKPVAEDQCHCCAEDLKTAHSGGSFKCSNCDMSFKKASSLERHLIVIHWESDSCTCNDCGSTFRDKKALDKHRYTTHMKTNKVYRCDKCDTYFSRSYHLNRHKQQSGCHGDTSNSFSCQVCNKVFTRKDNLREHLRTHAGMPQRKKKSCQLCPKQFYTNQQLIIHQRMHTGERPIECDLCPKTFLSTLAMKKHRRVHTGEKPFECKYCQKKFAARETLNRHQRTHTGEKPHVCQYCNKSFIQAAQLRAHIFHHTGENGFYCDVCGKAFNRKARLTNHKKFVHEGATPFKCEICEKSFTRKEDLSKHINLHAGIKPHKCDTCGKCFAAKSSLQAHMNTHRREPPQSCAECGRAFIRQDCLMRHIRAKHRDLLEDVLGEAEKKHLQLQMFNIAYTAAEKMKTGETNILSTNELLKAITELLTVLIEKETLELFGWLQSPLQDVLEAVIRRCGHEPLTSDSDLSLSERLRGNVKLLFNAVIEDENVKSLLTTQTVDEVIMHVLKLSKNNKKTEEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00691361;
- 90% Identity
- iTF_00304581;
- 80% Identity
- -