Pnir001539.1
Basic Information
- Insect
- Pleistodontes nigriventris
- Gene Symbol
- bab1_1
- Assembly
- GCA_903653215.1
- Location
- CAHLDJ010002084.1:23762-30644[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.8e-06 0.027 16.0 0.1 2 38 206 241 205 247 0.88 2 3 2.4e-14 2.3e-10 41.9 0.0 1 39 255 292 255 296 0.95 3 3 2.6 2.5e+04 -3.1 0.1 7 19 313 324 312 331 0.66
Sequence Information
- Coding Sequence
- ATGTCCGAATCGGCAGCTGCAGCAACGACCGATGATACGCAGGTAGATACTTCGTATTGCTTCAAATGGAGCAATTACCAGAGCCATTTGTCGGAGGTCGTGCGCCAGCTACTCGAGGAGGAATGTATGGTCGACGTGACGCTCTACGCTGGCGGCGAGCGCATCCAAGCTCACCGACTCGTCTTGTGCGCTTGCAGTACTCTGTTTCAAgaaattttGAGCCAAGTTAATGAAGAACATCCTACTATAATATTGAGTGATATATCCCCTCAAGATGTTCGATCAATCGTGGAGTTCAGTTACAATGGAGAAGTTAGAATTCCCGTggagaatattaataatttgttggaTGCAGCTCATTCATTAAAGATATGCGGTTTAATGGAGatcGAAGGTCTTGATGAATCTGAAATACCAAATGACAGAGACGTAAACGTTGAAGAAACATACATTTTCAACGAATTAAGTAAAACGGATGaggaagaaattaaaatattcgatagagcaaacaatgaaaaaattaaagaaaagaaaagaagaagctCAGACGACGATACGGattctattcttaaaaaaagaagacgAAGAAAGAGCGTTTGTAAAAAAGAGTACAGCGATGAAATGTTAACTGCTGCCATTGCCGATATACGTGCTGGAAGTTCATTATTAGATGCAGCCGCGAGGAATCACATTCCTAGATCTACTCTTTACATGCGTGCAAAAGTATTAGGAATACCTCTAAATCCTTCTAGAAGTGAATATACAAACGAAGACATGAAATCAGCAATCGAAGCAGTTatagCTGGATCCAGTTTACAACAAGCGTCAGATTTATACGGAATTCCAAAAACAGTTTTATGGAGGAGAATTCAGAAAGAGGGTTGTCAAACACCTAGACACGATACTAGAAAGAATTACGGCGCTGAAAAAAGAGAAGCCGCAGTCAAAGCCTTAGCAAGAGGAGAAACTCTTACGAAAGTAGCAAACGAGTACAAGGATGATACAGAAATGAATATAACATATATAGATGAAAGTAATATGTCAGATGATCCAGTAATAATTCTTGCAAGTGAAGATGTAAATGAACTTAATTTACCCAACAGTAGATCATTAGTGGTTGTGCACGAGaataccgacgaaaattttatatcatgtgGTCTAGAATTGGATGAGAACACAACCTTTGTATCAAAAAGTTAA
- Protein Sequence
- MSESAAAATTDDTQVDTSYCFKWSNYQSHLSEVVRQLLEEECMVDVTLYAGGERIQAHRLVLCACSTLFQEILSQVNEEHPTIILSDISPQDVRSIVEFSYNGEVRIPVENINNLLDAAHSLKICGLMEIEGLDESEIPNDRDVNVEETYIFNELSKTDEEEIKIFDRANNEKIKEKKRRSSDDDTDSILKKRRRRKSVCKKEYSDEMLTAAIADIRAGSSLLDAAARNHIPRSTLYMRAKVLGIPLNPSRSEYTNEDMKSAIEAVIAGSSLQQASDLYGIPKTVLWRRIQKEGCQTPRHDTRKNYGAEKREAAVKALARGETLTKVANEYKDDTEMNITYIDESNMSDDPVIILASEDVNELNLPNSRSLVVVHENTDENFISCGLELDENTTFVSKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01219187;
- 90% Identity
- iTF_01219187;
- 80% Identity
- iTF_01219187;