Pnir000166.1
Basic Information
- Insect
- Pleistodontes nigriventris
- Gene Symbol
- retn_1
- Assembly
- GCA_903653215.1
- Location
- CAHLDJ010002841.1:28567-33835[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.5e-14 5e-10 41.5 0.0 14 79 567 630 563 631 0.90
Sequence Information
- Coding Sequence
- ATGGAAAATCTTCATTTTACAACTACACAAATCGAGAGTTTGATCCTCCGCGACGCATTTTTTCTCTCGGCGGAGCATTCGTTATTTGTTAAACTCGAATCGACCGGAAAAGGACGAAAGACAACCGTCGCGATCATCGTCGACTACGACGGGAGCAAAAGGGCGTCGAGTCATTGCGATGTGGCCCATCGACGCGCGCGAGCGACATCGGTATATTACGTCGCGGCTTCGCCGCCATGCAAGAGGGACAGAGAAGGAGGGACAGAAAGAAAGataaagcgagagagagaaacgtCGACGgccattataaaaataactgctGATTGGACGCCCTACCAAGAAAAGAAAACGTTCGAAGTTTGCGAGTCGGCAAACGAGATCGTACGACAGCGCAAATCGCAGATGCAAGGGGGACGCGTCGTACAAGCGTTTGATAATTTCAATGTGGACTGTACGGACGAATCGCTCGGTCTGCGCGTTTCAGTCTCGTTCGCTTCCACTTGTCGGTCGGCGATGCACAATGAGAGACGTTTACCCCCACccacgatattttttattctccgGCTTACCGCGGCAGCCGCCGTCGACGCGACCTTCGAGATTCGCTCAATTGACTCCGGCGGATCCGTCAATATTCCCATCAAGGGAGAGGCCGAGCTCGTGGCGGCGATGGAAATTAATAATCGAAAGGAGCCAGGCCCCACCGAGCGCAATAATAAAACCGTACAATATACATTGTCTCGTTGGCAGCAAAATATTCTCCCGGAGCGTATAATTATCTATCCGCAATATCTCGAGAGCCTAAACATCTCCATAGAGCGCGCGAGGCTTCTTCGTCATCATCGGGCGGTCGGCGCTCCGAAAAAAGCTGCAGAAGTGCCCCAAGAATCTGCGAAAAACGCGATGCGCGCACCGGTCGTTATATTATGGGAGCAGAAATTGCGCGATGCGCGCGTctataaaggatttttttcgcCCCGGACGTTTTTTTGCTCGATTATCGAGCTTCGGCGGACGGCATTTACCGCCGGCCTCACTTCCTTCGGCTCCCCGGCGTTTTCAAGAGCACGACGATACGGCAAGCGAGTCTCTCGTGAAAAAGGCCGCTGCGGCATTATTGAGCACTCGATCGATGCGGCGAgctgttttataaataacgATGGATCAATTTTCACAGAAAGTGAAGTTACGCTCGAGGCAGGCCTGCCAGGAGTGGCGCCGAGGTGTCAAAAGCCGATGCACCTACTCTGTACCTACGTGAGCGTAATTCCGAGAGGGAAGGTGGAGGGGGAGAGGGTCGCGGTTTGCCCAGTAGAAAAGGGGGGGGGGAGTGAGAGACTCGGTAGCGTTAACGAGAGCAATAACGAATTCGCGACTATCACGCGAAGGAGCGCAGTTTTTATGGGCTCGCCAACTACGGCGAGTCTCGTTTATTTACATGAAACCGAGCGCGATTCACCTCCAGCGCTGTCGAACTCGGCGCGCACTCACACGCACACGCGGGTTTATTACGTGGAAAATAGAATGGAGAAGGCGACGGTAAGCGcgctaaattgtaaaaattcgaGCGTTTTGAGGGTGATTCACGATCGAGCTCCAAAGTGCGCGATCAAGCGGGAGATGATAGTCCTTAAAAAGAAAAGGCTGACGCACGCCGAGTCGATAGGTGGGTTGGGTTGCTCGAGAACGAGCGTCGCCGAGCCCGGGGGCACACCGATCAACCGACTGCCGATAATGGCGAAATCAGTGCTCGACCTGTACGAGCTGTACAACCTGGTCATCGCCCGCGGCGGCCTCGTCGACGTCATCAACAAGAAGCTCTGGCAGGAAATCATCAAGGGCCTTCACCTCCCGTCGAGCATAACCTCCGCCGCCTTCACACTGCGCACCCAGTAA
- Protein Sequence
- MENLHFTTTQIESLILRDAFFLSAEHSLFVKLESTGKGRKTTVAIIVDYDGSKRASSHCDVAHRRARATSVYYVAASPPCKRDREGGTERKIKRERETSTAIIKITADWTPYQEKKTFEVCESANEIVRQRKSQMQGGRVVQAFDNFNVDCTDESLGLRVSVSFASTCRSAMHNERRLPPPTIFFILRLTAAAAVDATFEIRSIDSGGSVNIPIKGEAELVAAMEINNRKEPGPTERNNKTVQYTLSRWQQNILPERIIIYPQYLESLNISIERARLLRHHRAVGAPKKAAEVPQESAKNAMRAPVVILWEQKLRDARVYKGFFSPRTFFCSIIELRRTAFTAGLTSFGSPAFSRARRYGKRVSREKGRCGIIEHSIDAASCFINNDGSIFTESEVTLEAGLPGVAPRCQKPMHLLCTYVSVIPRGKVEGERVAVCPVEKGGGSERLGSVNESNNEFATITRRSAVFMGSPTTASLVYLHETERDSPPALSNSARTHTHTRVYYVENRMEKATVSALNCKNSSVLRVIHDRAPKCAIKREMIVLKKKRLTHAESIGGLGCSRTSVAEPGGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -