Pcon009725.1
Basic Information
- Insect
- Plectrocnemia conspersa
- Gene Symbol
- -
- Assembly
- GCA_009617715.1
- Location
- VTFK01000040.1:847362-850733[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.31 27 5.9 0.4 3 23 111 133 110 133 0.96 2 11 0.66 57 4.9 0.9 1 23 139 164 139 164 0.91 3 11 0.041 3.6 8.7 0.4 3 23 201 223 200 223 0.95 4 11 1.2 1e+02 4.1 2.9 1 23 229 253 229 253 0.96 5 11 9.5e-05 0.0083 16.9 3.7 1 23 261 285 261 285 0.93 6 11 0.0077 0.68 10.9 0.2 3 23 295 318 294 318 0.93 7 11 0.057 5 8.2 1.6 1 23 325 349 325 349 0.93 8 11 0.00072 0.063 14.2 0.1 2 23 355 378 354 378 0.94 9 11 0.00052 0.045 14.6 1.6 1 23 384 408 384 408 0.98 10 11 0.00031 0.027 15.3 0.4 1 23 416 438 416 438 0.98 11 11 0.0093 0.81 10.7 0.8 1 23 444 469 444 469 0.96
Sequence Information
- Coding Sequence
- ATGCAGCACAGTATTATACCGGCATTACCTCAAAATAAAAAGCCGAACATATTGCGTAGAAAGCAAAATGAAGAACCGATCAATGAATTTATTGctgaaaatatgttaaataataacgataatGAAGCGAACGGTAAGCCTCGCAAAGATAAATCGAGCAGATCGATCAGAAAGATTAAGCTAGATTCATACATTAGCGATAAGTCTAAAAATttgactgaaaatataaatatagagcgCACAAAGATAGTGACAGCTTTGGAATCGGGTGCTTTGGGAGAATATAGTATACTGATCGGAGAGGGTAATGATCAGAGACACTTTTGGTTGTGTCCGATAGCtgaatgtaataaattgttCTTGGATAGATCAGTTCTTCATCTGCATATGCTATCGCATTTCAATCTTAGTTCGTTCAAGTGTGATATAGAAGGATGCCCTGAAGAATTTATTTGCAAAGACAAATTAACCGATCATAAAACTGAAACGCACAGGAACAATAACACTAAGAAAATCGTAGACGACGCTCTTTTTAGCGTCGGTGTCACAGATGAACAAATAAAACAGGTGACATTAGAAGACGCCTCAACCAGATGGTTGTGTCCTTATTCGGGCTGTGAATCTAACTTCAAAACCAAATATTTGATCAAGAATCATCTTTTAATGCATTATAATCTTAGACCTTTTGAGTGCAACTTCGGTAATTGCGTATGGAAGTTCAGATCGTTGAACAAGTTGAAGTGTCATCAGACCGTTCATGGCGAACGAGGAAATGGACCTTATCTTTGCACCCATTCAGgatgcaaaaaaacattttctacaAGATACAATCTATCGGCGCACAAACGTCTCCATGAAAAGTTCGATGATGTTACCGGTTTATGTCCAGTGAAGGAATGCCCGAAGGAATTTGAGTATCACGCCGATTTATTGACTCATTTAAAAGACGATCATGAAGCGAATGATGCAATGCATGAATGTAAATTATGCGTGAAGAAATTCTGGTGGAAGAGCAGCTTAGAAAAGCATCTCCGTACAGATGATCACACTCCTAAGGAACTCGTATGCACATGGGAAGGATGCGGCCGTCGTTTCGCCATACCGTCCCGTTTAAAGTATCATTTAAGATCTCACACAGGCGATAAACCATACAAATGCACTTTTCCATCTTGCAATTGGGCCTTTCATTCATCTGGTAAACTTCGAAGACATGCCAGGATCCACTCTGGTAGTAAAGGTCGGCAGTACGTATGCGAAGCATGCGGAAGAGCCTTTCTCCGATCGGAGCATCTTCAGGAGCATCTATTAAGGCATCTACCATATAGGAATTATTCATGCGATTATCCAGGTTGTGACCAGAAATTTATGAACAAGAGTTCAATATACGTTCATAAGAAACGCGATCATGTGTTGAACGAGATCTCGTGCATAGTTGAGATTGATAAAAGTATTACTGATATTTCTCAAATCAAGTTAATCGATGATGATTCTCTATCGCTGAGATGTGCTCGAACTCACGTGCCATGGGATTTGGATACTCTTCGTGAGACTCATACTAGTCATGATgtcaatattttacaacataaaataagCTGTGATGAAAAACAAGGTAATCCTTTAGTTTGCGGAGGATTGGGATTAGAAGGAGACAATTTGTCAGTAGGCGCTGGATTGACGTTGGAACTGGACGGCTCGGAAGTCAGCAGCTTGACTGCTGAATTGAACACTGATCTTCTAGGGTCATCCAACGATCACATAAATAGTCTATTGCTAcagGAAGAATTATCCGATGCGATCTTGTACGCTCCAGAAGAAGAAGCAGCTCTGCAGGTGATGCTGCTGAGCGAAGATCCAGCTCCATAA
- Protein Sequence
- MQHSIIPALPQNKKPNILRRKQNEEPINEFIAENMLNNNDNEANGKPRKDKSSRSIRKIKLDSYISDKSKNLTENINIERTKIVTALESGALGEYSILIGEGNDQRHFWLCPIAECNKLFLDRSVLHLHMLSHFNLSSFKCDIEGCPEEFICKDKLTDHKTETHRNNNTKKIVDDALFSVGVTDEQIKQVTLEDASTRWLCPYSGCESNFKTKYLIKNHLLMHYNLRPFECNFGNCVWKFRSLNKLKCHQTVHGERGNGPYLCTHSGCKKTFSTRYNLSAHKRLHEKFDDVTGLCPVKECPKEFEYHADLLTHLKDDHEANDAMHECKLCVKKFWWKSSLEKHLRTDDHTPKELVCTWEGCGRRFAIPSRLKYHLRSHTGDKPYKCTFPSCNWAFHSSGKLRRHARIHSGSKGRQYVCEACGRAFLRSEHLQEHLLRHLPYRNYSCDYPGCDQKFMNKSSIYVHKKRDHVLNEISCIVEIDKSITDISQIKLIDDDSLSLRCARTHVPWDLDTLRETHTSHDVNILQHKISCDEKQGNPLVCGGLGLEGDNLSVGAGLTLELDGSEVSSLTAELNTDLLGSSNDHINSLLLQEELSDAILYAPEEEAALQVMLLSEDPAP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -