Pcon016276.1
Basic Information
- Insect
- Plectrocnemia conspersa
- Gene Symbol
- -
- Assembly
- GCA_009617715.1
- Location
- VTFK01000109.1:1543195-1552718[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.012 1 10.4 1.6 2 23 170 191 169 191 0.97 2 28 4.8 4.2e+02 2.1 5.5 1 21 218 238 218 239 0.94 3 28 0.026 2.3 9.3 1.4 1 19 248 266 248 269 0.88 4 28 7.9 6.9e+02 1.5 0.1 2 19 287 304 287 307 0.90 5 28 0.0016 0.14 13.1 4.3 1 23 364 386 364 386 0.98 6 28 4.5e-06 0.00039 21.1 3.4 1 23 404 426 404 426 0.99 7 28 0.0014 0.12 13.3 1.3 2 23 442 464 442 464 0.96 8 28 6.4 5.6e+02 1.7 2.5 2 23 493 514 492 514 0.95 9 28 0.00085 0.074 13.9 2.3 1 23 525 547 525 547 0.98 10 28 0.00063 0.055 14.3 1.1 1 23 607 629 607 629 0.98 11 28 0.27 24 6.1 0.7 2 23 641 662 640 662 0.96 12 28 0.029 2.5 9.1 0.2 2 23 674 695 673 695 0.95 13 28 0.00029 0.025 15.4 2.5 1 23 701 724 701 724 0.96 14 28 0.28 25 6.0 9.4 1 20 737 756 737 759 0.95 15 28 5.2e-05 0.0046 17.8 2.5 1 23 774 797 774 797 0.98 16 28 0.0065 0.57 11.2 1.3 1 23 819 842 819 842 0.94 17 28 0.0099 0.87 10.6 0.2 2 20 881 899 880 902 0.92 18 28 3.6e-05 0.0031 18.3 1.3 2 23 943 965 942 965 0.95 19 28 0.00094 0.083 13.8 1.5 2 23 990 1011 989 1011 0.97 20 28 4.1 3.6e+02 2.4 3.5 2 23 1015 1036 1015 1036 0.96 21 28 2 1.7e+02 3.3 2.5 2 23 1054 1076 1053 1076 0.91 22 28 1.4 1.2e+02 3.8 1.5 2 23 1119 1139 1118 1139 0.91 23 28 0.0093 0.82 10.7 1.1 2 23 1150 1172 1149 1172 0.92 24 28 0.017 1.5 9.8 1.2 2 23 1188 1206 1188 1206 0.96 25 28 2.1 1.9e+02 3.2 3.0 1 19 1209 1227 1209 1230 0.84 26 28 0.013 1.2 10.2 2.1 3 23 1284 1304 1282 1304 0.95 27 28 0.0088 0.77 10.7 2.4 2 23 1315 1337 1314 1337 0.96 28 28 0.56 49 5.1 1.1 2 22 1353 1370 1352 1371 0.73
Sequence Information
- Coding Sequence
- ATGGCCGCTCTGGGGGCGCTCAGCAAGTGCCGGCTCTGCCTCAAGCTCGGCGACTTCTACTCCATATTCGCCGAGGACAACTCCATACAGTTGGCAAGGATGGCGATGGCTTGCTCGGAAGTCAAGATATTCGAAGGTGACGGACTTCCCGACAAGATCTGCAGTGAATGCGTTGAAAAATTGAGCTCtgcatttattttcaaacaacaGTGTGAAAGATCCGATGCCGAACTGAGGAAATCATTTAAACCTAATATTACGATCACGGCCGTGCACGGTAATCAGAGCACCGAAAATGACGAGAGGCGGCAAAGATCTTTGAAGAGAAATCGAGGCGAAGACATCATTACCAAGTATTCGCCTACGGCTAATTTATTAGAGGAGAGTTACAGCGTCGATGTCTCTGATACTTTATCGTTTGAAAATACTCATCCTATGAATATAAAGATACGCAGATTGTCCGATTCGAGTTCTGTTAGTCTGGCGTCTACGACTAAGAAAAAGATTAAGTGCGAATTATGCTTTGCAACGTTTAAGACGAACAAGGGTAAATCGTCACATATGCGATCGCACAAGAGGGACGAATTAGCAAAGACAAATGTCGGAGCAAATAATTCATCGCAGGGTCTGAACGTTACGAAAGACGCGAGTTTCACTTGCAAACATTGTGAACATACCTgtgtaaagaaatatatttttgcgaagCACTTGAGAGATTGTCCCGGCAACGAATCGGGCGAGTTCGAATGTCCGAATTGTACGAGAGTCTTCAAGAAAAGATTCCATCTCGTGTTCCATTTGGAAAAGAATTTAGAGTGCGGAGGAGAGAGCAAAACCAACTCGAAAAATCAGAAACCGCAATGTTCCAATTGTGATATGGAATTGACGTCGTACATGGCGATGCtcagacatttttataaatgcgtaGAAGTGAACGGCCTCAAAAAAATGTCATGCATCACATGCGATCTCaactatttaaatagaaaagctTTCGTCAAACACATCAGATTGGTGCATATTTATAGCGAGGAAAATGGCGGCGCTCCGCAAGCTTGGACCATTTTGAAACCAGCCATGAATAACTCGTTTAAATGTCATAAGTGCTTTATGGTTTTTGATAATCAGTTCAAACTCGCTACGCACATATCAAAGCACTTGAACAATGTCGACATCAGACCTAAGAATTCATCTAAGTTTGCCATTCCTTACAAATGCccaaaatgtaacaaaaaattcAGATTCAAATCATCCATCATAAACCATATGAAATCTCACCGAGATACGATGACGATTAAACAGGAATTCGAAGAGAGTAACAACACTTGCGATTTATGCGATAAGTCCTTCCAATACGCGAAATCACTGGCaatacataaaaagaaaaagCATACGATGCAGGTAGTTTCGATGGAAATAGCCGACGGTATCGAGGGAGATGACAAATCAGCATTCAACTACTCGAAGTTATCTTCTAGGTGTTTGCATTGCAATTTGATACTGTCGAATAAACGCGAACGAAAGCTGCACAATCAAGTGCACATAAAAATGAACGAAAAACCTAAGAACGAGTACATGTGTCCGCAGTGCAGTATGAAATTTACCAACACGAAAACTTTCCAAATTCATTATAAAGTACACGAGGGCGAAGTGAAAGATGAGGCGGAAGACGAAGAGGAGGTGTTCGATGCGAGCATAACTAATTTCTGCGAAGTCACGAGCGATCTACCCAACGATTGCGATACTGTCGAAATAGAATTTGTACCTGAATTGGAGTACGATAACGATCAGTCGCAAACGTCGATCGCGAGCATCGGTTATACGTGTACGATATGCAACGAAAGTTTGAAATCGTTGAAGACGTATCAGGGACATATGAGATTGCACGAGAGAGATACCAACTCGGAACAAAATTTGATTACATGCATGGTGTGCGATGaggaATTCTATGATGAAAATGAGCACCGTCAGCACATGAAAGAGCACTATAACGATAAAAACATAGATACTTCTTTGCTTGTGTGCAAGCTATGCAATAAACCATCCAAAAACATGCGTTCGTACATCGCTCATATATCGTGGCATAGCAATTCGGGCACCTTCCAATGTTATTTATGCAACAAGACTTTTCCGTATTCCAACTACTACGCGAAGCACATGAAAGGCTTTCATAATGTCAGCATCAAAGACATGGGCATGGCTACGAAGCACAAGTGtcacatttgcaaaaaatactttgatactCATAATTCGTTACAGTATCATATTACTTGCCATAAGAGAGGTCAGCAagcaagtaataataaaaagaaagtaGAGTTCAAATGTACTCATTGTAATAAGCAATTCGTTGCCAAATATGCTTTAGTAACGCACATGTTGACTAATCACAACATACAAATAGATATTGCCAATCCAGAGTtattaactgataaaaaattaaaatcgggCAAGTTCCACTGTTCGTTTTGCGACTTGGTGTTTGCAACTCAAGGCGGATATTATAAGCACCTTTCCAATATCCATCCGGACAGGAAGCATCTGATTGTTAAGAGTAGTAAGTCCATTATGGAAATCGCCCCTTTGGAACCGATTAAAATTGAGAGGATCGAGATTGACACTGAAAGCATGAAAGCTAATCAGTgtgttttttgtcaaaaatacttCAACAGTCCCGAAGAACTGCAAGAACATATTCCGGTACACAATCTGACACCGAATTTGTTCAAATGTACTATATGTTGTAAGAAATCAGCTACGATGAAGATGCATTTATTGCATCTAACAAAATTACATCTGCAACAGTATCATTTGAGCAATCCGTTAAAGTGTGAAAATTGCGATAAGAAATTCATTCGTAGACAAGAGTTGCGAACGCATCTACAAAACGATCATGATATAATCGAAGATTATGTTACGAAGCTGGATAAAGATGATGCTATCGAGCCTACGGATCTGAAAGATAAACAGTGTCATATTTGTGAGAAGATCCTTAGTAGCGAGAGCACATATCAGCGACATCTAATGTGGCATAACGAACGTCGTTGCAACTActgctgtaaatattttaattcgaaaGGCTTTGTAGCGACTCACGTGAAGTATCATTGCGAGAAAAAGAAAGTTTTAGGTAATTCGGATCAGTATGAAAAGAAGATGAAGTGCCACGTGTGTTTAAAACCGTTTTCAGTCGCTATAAAACTGTATTGTCATTTGAAGGTACAACATAACGCCGAACCTGATAGTAATTCAGGTGTTAAAAAAGTATCACCGTGTGATTTTTGCTTCTCTGTGTTCCATTGCGAAGAAAAGATGTTATCGCATCGAAAGTCACATTTTTATGTCTCAATCTTGAAGTGCAAATTTTGTGAAAAGGCTCTGCGACCGATAcagtttaaaaaacataaagtgCAACATTATTCCGAGTCGTTTGAAGACAATCCAATAACGTGCGAACATTGCGACGAAAACTTTACAACTATTCGTTCTTATAGCAATCATTTGACGTTGGTTCACAACGAAACGTTAGTTTGGAGCGAAGTGCTCGATAATCCCAGCGAAAAGTGCAATATATGCAACAAAGAATTTGCAAATCTACAGCGGCACCTTATGTATCATGAAAAGTATAAATGTAAGAAGTGTTTGAAGCATTTCTATTCAGAGATATTGTTCGGTGAGCATGTGTGCGAAATAGAGAGTGACGATGAAATGGATAAAAAAGTCAAGGTTGAGACGGACGCTTCTGATGCGGATTGGGTAGAAGAGTgcgatttttgttttaaaccCTTCACGGgtcaaaattgtaaatcaaagCACAACTATAACCATTATAACAATCAAAGTTATGGATGCAGATTATGCAGCAAGCGATTCTCAATGAAGTCAACTTTAAAGTATCACTTTGCGTCTCACAGAAATCAAAAGTTTAACGATAATCCGTTACAATGCCGAATTTGCTCTACCACTTTTAATAGACACCAAGAGTATTTTGATCATTTAAAAGTCGAACACAATATAAATGAGACTTTAGATTACCGAGCCGAATTCCCGGCTGTCGAATGCCTGATATGTAAAAAGTCATTCTCGAATATATACCGCCATTATAAATACCATCAAGATATACAGTGTGgccaatgttataaatatttcttatcgcATCAAGCTTACATGGATCACGATTGTGGTAAATCTACAGTAAATCCGGATACGGCCGTTGAGTTCGACGGCGACTTAATGAGTCTCACTATCGCCGATTATAAACCATTTGAAATTAAGCGATTATACGACGGCAATAATAAGATGATTAACACGATCGAGGAGGATTCTAGCTACAATCATACAGATTTTTCGGCAGTTGCCATTAAATCTGACTTGGACTCGTCCATGGTAAGTAACGGAGATAATATGTCGCAAACTTCGTTCGATAATTTCTCGCCGGTCATATCGTCGACGATATCTTTAAGTTCTGCCGGCAACGAAAACAAAGAGGGCGAAGAGTGCGACATTTTCATCAAGAGCGAACCGATCGATCATCATTACAACTATATGGACCATGGCTTGAATGAAacgtaa
- Protein Sequence
- MAALGALSKCRLCLKLGDFYSIFAEDNSIQLARMAMACSEVKIFEGDGLPDKICSECVEKLSSAFIFKQQCERSDAELRKSFKPNITITAVHGNQSTENDERRQRSLKRNRGEDIITKYSPTANLLEESYSVDVSDTLSFENTHPMNIKIRRLSDSSSVSLASTTKKKIKCELCFATFKTNKGKSSHMRSHKRDELAKTNVGANNSSQGLNVTKDASFTCKHCEHTCVKKYIFAKHLRDCPGNESGEFECPNCTRVFKKRFHLVFHLEKNLECGGESKTNSKNQKPQCSNCDMELTSYMAMLRHFYKCVEVNGLKKMSCITCDLNYLNRKAFVKHIRLVHIYSEENGGAPQAWTILKPAMNNSFKCHKCFMVFDNQFKLATHISKHLNNVDIRPKNSSKFAIPYKCPKCNKKFRFKSSIINHMKSHRDTMTIKQEFEESNNTCDLCDKSFQYAKSLAIHKKKKHTMQVVSMEIADGIEGDDKSAFNYSKLSSRCLHCNLILSNKRERKLHNQVHIKMNEKPKNEYMCPQCSMKFTNTKTFQIHYKVHEGEVKDEAEDEEEVFDASITNFCEVTSDLPNDCDTVEIEFVPELEYDNDQSQTSIASIGYTCTICNESLKSLKTYQGHMRLHERDTNSEQNLITCMVCDEEFYDENEHRQHMKEHYNDKNIDTSLLVCKLCNKPSKNMRSYIAHISWHSNSGTFQCYLCNKTFPYSNYYAKHMKGFHNVSIKDMGMATKHKCHICKKYFDTHNSLQYHITCHKRGQQASNNKKKVEFKCTHCNKQFVAKYALVTHMLTNHNIQIDIANPELLTDKKLKSGKFHCSFCDLVFATQGGYYKHLSNIHPDRKHLIVKSSKSIMEIAPLEPIKIERIEIDTESMKANQCVFCQKYFNSPEELQEHIPVHNLTPNLFKCTICCKKSATMKMHLLHLTKLHLQQYHLSNPLKCENCDKKFIRRQELRTHLQNDHDIIEDYVTKLDKDDAIEPTDLKDKQCHICEKILSSESTYQRHLMWHNERRCNYCCKYFNSKGFVATHVKYHCEKKKVLGNSDQYEKKMKCHVCLKPFSVAIKLYCHLKVQHNAEPDSNSGVKKVSPCDFCFSVFHCEEKMLSHRKSHFYVSILKCKFCEKALRPIQFKKHKVQHYSESFEDNPITCEHCDENFTTIRSYSNHLTLVHNETLVWSEVLDNPSEKCNICNKEFANLQRHLMYHEKYKCKKCLKHFYSEILFGEHVCEIESDDEMDKKVKVETDASDADWVEECDFCFKPFTGQNCKSKHNYNHYNNQSYGCRLCSKRFSMKSTLKYHFASHRNQKFNDNPLQCRICSTTFNRHQEYFDHLKVEHNINETLDYRAEFPAVECLICKKSFSNIYRHYKYHQDIQCGQCYKYFLSHQAYMDHDCGKSTVNPDTAVEFDGDLMSLTIADYKPFEIKRLYDGNNKMINTIEEDSSYNHTDFSAVAIKSDLDSSMVSNGDNMSQTSFDNFSPVISSTISLSSAGNENKEGEECDIFIKSEPIDHHYNYMDHGLNET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -