Pcon017149.1
Basic Information
- Insect
- Plectrocnemia conspersa
- Gene Symbol
- -
- Assembly
- GCA_009617715.1
- Location
- VTFK01000098.1:609301-612978[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0074 0.64 11.0 2.7 1 23 253 276 253 276 0.94 2 9 1.2e-05 0.0011 19.7 0.1 2 23 310 331 309 331 0.97 3 9 5.7e-06 0.0005 20.8 3.0 1 23 339 361 339 361 0.97 4 9 2.1e-05 0.0019 19.0 0.3 1 23 370 393 370 393 0.96 5 9 4.5e-05 0.0039 18.0 0.2 1 23 399 421 399 421 0.96 6 9 1.2e-06 0.0001 22.9 1.7 1 23 427 449 427 449 0.97 7 9 0.013 1.1 10.2 0.5 1 22 454 475 454 479 0.94 8 9 7.8 6.9e+02 1.5 0.5 15 23 475 483 474 483 0.90 9 9 0.00099 0.087 13.7 2.9 1 23 489 512 489 512 0.97
Sequence Information
- Coding Sequence
- ATGGCGGACGTTGATGTCGGCGCTTTGTGCCGGCTGTGTGCTCAAGATTCAGACTGCGAAGAAAGCATTTTCTTTTACGATGAAGAAATAGATCTAGTGACAGCAGTCGACAAATGCCTATCGATACAAatcacATCAAACGATGGATTACCTACAATCATGTGCAAGAAATGTCGCACAAAAATTATCTCcttcaacaaattttataatatgtgcaACCAAGCTCAAGTGGTATTGAGAAACTTAATCAAACAAAATTCAGATAATGACGACAAATCTGCTTTTACGTTGCATGAAGTCAAAATCGAGCTTGCCGATCATCAAATCAAATCTGAGGATCCGAGCGAGGACGACAATGACGATTACGACGATTATATACCAATATcgcaatgtatatatatttcttatatttatgacatctagaatcaatattaatacatataatttttatattgtttctttattaaatatgtagaaatgtaggataagaaaaatctatttcaaataaataaaacaaccatTCAGAAGCATTTAATGAAAGAACATGAGCATAAGAATAAAGGTAGTCCTTCAAAATCATCATCGAAACATCACAATTTGAGAAGTATCGCTGAAGGATCtgatgataattttaatggcGTTAATGATGAAGATGACGATGACGAAAAAGTTGATTCTGAAATGTTGCTGGAAGACAATTCATCTTCAAGGTCGAAGAAAAATAGAGAGAGCGTTGTGGAAAATTCTTTTATTAAgtTCTTCTGCAATGaatgtaaaatcaattttaaaaactggCCCAGATTTAAATCGCACACTAAAGAGAAACACCGCAAGAAGGCTAAAGTTTTGTGTATTTgcgataaatatttgcatacataCAATTCGATAATCAGGCATGTGATGAAGCACAGTATAACGACACATATAAAatgCCCAGATTGCGAAAAGACATTCCCTAATCAGAGAGCATTATCAGTTCACTCGATCACGCACCTCCCTAAAGATCAATATCCCCATCCTTGCAACGAATGTGATAAAAGATTCGCAACGAAATTGACTCTAAAGATGCACCAGAAAACACACATACCGAAAGAACTAAGATATGTTCATCCGTGTGACATTTGCGGTGTAatgtTCACTTCCAAAGGCAGCGTCAAAACTCACATTAGCACAGTTCACGAGAAACTCAAACCGTACGTTTGTGACGTATGCGGACATGCTTTTGGTAACAAGGGCAATTTGTCGGAACATAGAGCACTTCACAGCGATGAGAAACTTCACAGATGTCCTAAGTGTCCtaaaatGTTTAAAACTAAAGGAACTCTAATAAGACATGTTGATTCTCACGGCGATACATCTTATAAATGCCCTGAATGTCCAGCTTTGTTGAATTCGCGTAGAACACTAAGGATGCATATaaaatcattaaaaTCTCATATGAACATACACACTGGTGAAAGACCGTTTTCATGTCCTTGGTGCTCTCGCACTTTTGCCGACAACTCAAATTGTCGGATACATAAGAAAAGGATGCATCCGAATGAACTGGCTCTGTATGAAGCCGCTAACGCCCCTCCTGAAGAAATGACAAAAACTGAATCTAAAGAAACGGCCAAGATTATATACACAACAAAGTTCAAGTTTTCGTCAGCGCACAGGTCGACGAAAATAATCCTACCGCAGATAGACATCAAGCCGGATTTGGAGATGAACTTGAAAGATAACTCTAATTTGTAG
- Protein Sequence
- MADVDVGALCRLCAQDSDCEESIFFYDEEIDLVTAVDKCLSIQITSNDGLPTIMCKKCRTKIISFNKFYNMCNQAQVVLRNLIKQNSDNDDKSAFTLHEVKIELADHQIKSEDPSEDDNDDYDDYIPISQCIYISYIYDI*NQY*YI*FLYCFFIKYVEM*DKKNLFQINKTTIQKHLMKEHEHKNKGSPSKSSSKHHNLRSIAEGSDDNFNGVNDEDDDDEKVDSEMLLEDNSSSRSKKNRESVVENSFIKFFCNECKINFKNWPRFKSHTKEKHRKKAKVLCICDKYLHTYNSIIRHVMKHSITTHIKCPDCEKTFPNQRALSVHSITHLPKDQYPHPCNECDKRFATKLTLKMHQKTHIPKELRYVHPCDICGVMFTSKGSVKTHISTVHEKLKPYVCDVCGHAFGNKGNLSEHRALHSDEKLHRCPKCPKMFKTKGTLIRHVDSHGDTSYKCPECPALLNSRRTLRMHIKSLKSHMNIHTGERPFSCPWCSRTFADNSNCRIHKKRMHPNELALYEAANAPPEEMTKTESKETAKIIYTTKFKFSSAHRSTKIILPQIDIKPDLEMNLKDNSNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -