Pcon018544.1
Basic Information
- Insect
- Plectrocnemia conspersa
- Gene Symbol
- -
- Assembly
- GCA_009617715.1
- Location
- VTFK01000107.1:639757-643643[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0065 0.57 11.2 2.8 3 23 198 219 196 219 0.95 2 13 0.15 13 6.9 0.6 2 23 227 249 226 249 0.88 3 13 3.6e-05 0.0031 18.3 2.3 1 23 258 281 258 281 0.97 4 13 0.013 1.2 10.2 3.3 3 23 312 332 310 332 0.96 5 13 0.07 6.1 7.9 0.8 2 23 336 357 336 357 0.94 6 13 0.00032 0.028 15.3 2.9 1 23 364 387 364 387 0.97 7 13 1 89 4.3 1.3 1 23 394 417 394 417 0.92 8 13 6.1e-07 5.3e-05 23.8 0.8 1 23 541 564 541 564 0.97 9 13 8.2e-05 0.0072 17.1 0.7 2 23 601 622 600 622 0.97 10 13 0.00083 0.073 14.0 0.8 1 23 628 651 628 651 0.96 11 13 0.0019 0.16 12.9 4.1 1 23 657 680 657 680 0.89 12 13 2.9e-05 0.0025 18.6 6.7 1 23 686 708 686 708 0.92 13 13 0.19 17 6.5 9.1 1 23 714 737 714 738 0.96
Sequence Information
- Coding Sequence
- atgggAGAATGGGCTATGTGTCGCACTTGCTTATCGAAAGATGTTCCAATGTGTTCTCTATTTGAAGCTAGGCAATTTGGACCTCATTTTTTAGCGCCCAGTGATGTTTTAACAATATGCACGCAATTAACTatcAACCCTAAAGACATGCTTCCAAATAAGATATGCAAAATTTGTTTGCTGCAAATCACACAAGCTTATGATTTCAATATGAAATCCCTCGAAGCCGAAAAGATGTTTCTTATACAAAATGCATTGAAAGACAATTTAGATATACTAAATCTACCGAGTGTAttgaacgataaaaatattattcaaaagtcGAATAAAACCGTTAAAGATGAAACTGTCGTCACGCTTCCGGTCCATATAGTTCCAAAAGTGAATAATAAAGAAACGAATTTGAAAGAAGTTCGCATCTTACCTAAGCTCAATAACGATACAAAGTCAACAGTTTTGTGGTTGGAGCCGTCGAATATCATATCGAATTCGCTCATTATACCCAATGCTCCACTTATAGCGAACGGTTATGGCATACAAACGTTGAACGATAACGGGAAAAATACTATGAACAAAGTAAGTGgattgttttgtaaaaattgtaacaaacaatttgtttctaCCGAATGTCTGCAGTTGCATGTGCAGAAAGAACATAGCGATTCTGCTCTTATTAAAGTTTGTAGCATTTGCAATGTATCATTCGACTGCGCTGCCAATTTGTCCCGGCATAATTTAGAAGTGCACTTTCCTTCAAAGAAGGTTATGAGATATACATGCGAAATTTGCAGGAAAGTTTATAAGCAAAAGTATTTAATGGAGCGTCATAAGAAAAGAGTGCATAAAAGCAAAGCGGAAGAGATTGATTCAAATAAATGTGAAGTGGATCAAAAAGAGAAATGCGATAATATACCTGACGCAGAAAAGATCTTTTGCAATTTATGCAAGAGAGAATTCAACGGCGTAAAACATTATCAAACTCATATGAGGTTTCACGTGAACAacgtttgtaaatattgtaatactgGATTCTTAAACGAAGAGCATCTTCTCAATCATGTTTCCGATCATATACTAAAATCAACTCCTTATAATTGTGTCTCGTGCGATAGAGTTTTTACGTTGAAGAAGGCTCTTAGAAAACATCATAGAGTATATCATCGAACTGTAAATGAATCGTTCTTTTGCGGTCACTGTAAAGTTTATAATCTTATAACTATTGACGAACTACAAAAGCATTTACAAAGTCATCAAAATAAACCACAAGTGGATGGTGTAATATCAATTAATgatcAACAGCAAAATGGTATTCAAATATCGACTATAataactctaaaaaatattgttgacacTACATCAAATTTCGAATTATTGGAAGCTCTGAACGAGTCCTCTAAGTTATTTAAGTTTGGTTCAACCAATGTCGATCCTACATCGAGAAAAGATACTTCAATTGCAgttaaactgtcTGAGAATAAAGCCAGCGAAGGTGAAACTTCGACTGTTCAAGATAATACGTATAGTATTCTTCAAAAACACATCATGAACAGCATGAGTGCAAATGACAGGGTTAAGGAAGCAGAGAATGAAGCTAAAATCATTCCGAATTCCAAAGCACAGTTTGAATGCGAATTATgctcaaaaaaatttacaagGTTGACAAATTTACAAAAGCATATGATCGTCGTGCACAATAATTATCCGATGAAGTGCGTCGGTTGCAATTTCACTTCAGCTAAAGAAGCTATTTTTAAGCAACATGTACGACAATGCCGGATGTTGCATACCAACAGAAAGTTAATTTGTCCAAAATGTGGTAAAAAATTGACATCATCTACTGGTTATAGgtatcatataaaaacacatttaaacaaTAGACGGTTCATCTGTCCGGAATGTCAACGATGCTTTCTGACGATTGGTAACTTAAAAGCTCACACGCTGCGGGTCCATTCCAAAGCTCGTCCTCATTGCTGTCAATCTTGCAATCGGACATTCGCAACGCTCGATCATTTGAACAAACACGTGGCCGGCGTTCATTCGAATCGACGCAACCACACATGCAAACAGTGCGGAAAAAAGTTCATACAAAGCTCGCATCTCAACCATCACATGTGGACTCATACTGGAGTAAAGCCACACAGTTGTCCACACTGTCCGAATAAGTACACCGCTAAATGTTCTTTAACAAAACATCTTCAAAGATATCACCATCCCGTTAGCGCCGAAAAAACGAAAGTATTACCAGACCAAAACGAGGAAATTGTTCTAAATCCAGTCCTAGAAGGCGCTAGTTTAGAACTAGATCTGGATAACCTAAACGGAGACGGAATCGTAATCGACGAAACTGACGATTTCGATAAAATGAATGTTGTTTTCATAGTGGAAGAAAATACaactaatgtttaa
- Protein Sequence
- MGEWAMCRTCLSKDVPMCSLFEARQFGPHFLAPSDVLTICTQLTINPKDMLPNKICKICLLQITQAYDFNMKSLEAEKMFLIQNALKDNLDILNLPSVLNDKNIIQKSNKTVKDETVVTLPVHIVPKVNNKETNLKEVRILPKLNNDTKSTVLWLEPSNIISNSLIIPNAPLIANGYGIQTLNDNGKNTMNKVSGLFCKNCNKQFVSTECLQLHVQKEHSDSALIKVCSICNVSFDCAANLSRHNLEVHFPSKKVMRYTCEICRKVYKQKYLMERHKKRVHKSKAEEIDSNKCEVDQKEKCDNIPDAEKIFCNLCKREFNGVKHYQTHMRFHVNNVCKYCNTGFLNEEHLLNHVSDHILKSTPYNCVSCDRVFTLKKALRKHHRVYHRTVNESFFCGHCKVYNLITIDELQKHLQSHQNKPQVDGVISINDQQQNGIQISTIITLKNIVDTTSNFELLEALNESSKLFKFGSTNVDPTSRKDTSIAVKLSENKASEGETSTVQDNTYSILQKHIMNSMSANDRVKEAENEAKIIPNSKAQFECELCSKKFTRLTNLQKHMIVVHNNYPMKCVGCNFTSAKEAIFKQHVRQCRMLHTNRKLICPKCGKKLTSSTGYRYHIKTHLNNRRFICPECQRCFLTIGNLKAHTLRVHSKARPHCCQSCNRTFATLDHLNKHVAGVHSNRRNHTCKQCGKKFIQSSHLNHHMWTHTGVKPHSCPHCPNKYTAKCSLTKHLQRYHHPVSAEKTKVLPDQNEEIVLNPVLEGASLELDLDNLNGDGIVIDETDDFDKMNVVFIVEENTTNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -