Pcon017249.1
Basic Information
- Insect
- Plectrocnemia conspersa
- Gene Symbol
- -
- Assembly
- GCA_009617715.1
- Location
- VTFK01000057.1:547020-551515[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0087 0.76 10.8 0.1 5 23 301 319 300 319 0.96 2 11 0.00034 0.029 15.2 2.0 1 23 322 344 322 344 0.97 3 11 1 89 4.3 0.2 2 23 352 373 351 373 0.91 4 11 8.7e-05 0.0076 17.1 3.9 2 23 379 400 379 400 0.98 5 11 0.045 3.9 8.5 4.3 1 23 406 428 406 428 0.96 6 11 0.018 1.6 9.8 1.1 2 23 469 491 468 491 0.93 7 11 0.012 1.1 10.3 0.5 3 21 499 517 497 518 0.93 8 11 6.4e-05 0.0056 17.5 0.3 1 23 530 552 530 552 0.98 9 11 0.00056 0.049 14.5 5.1 1 23 558 580 558 580 0.99 10 11 2.2e-07 1.9e-05 25.2 0.2 1 23 586 608 586 608 0.98 11 11 6.8e-05 0.0059 17.4 1.1 1 23 614 637 614 637 0.96
Sequence Information
- Coding Sequence
- ATGGGCATGGACGATCCGGAATCTCCGAACGAGTGGGCCCCCTTCTGTCGCGCCTGCCTCGTCACTTCAAACCTCAGATCGGTGCTGAACGACGATGAGCTGCGCATCAAATTCAAAGAGATCACGTCTATACAGaTCAATGAAGAAGACGAATTGATTGCACTCCTTTGCGAAGACTGCATTGACGTTCTTTGTTCTGCACATCAGTTTAGAAAGCAATGCTTATCAATAGACGATCAGATAAGAGCACAACTGTTGAAAATCAATAATGAGAGTTCTCCAGAAAATGCTGACGATGATGCaaacataattttgaaaaaacatataaaccaCAACTCTCTGTCGGATGAATTACCAAACGATAATGATACAGACGAGGACGATTTGTATGTGATTGTCGTGAACGAAGAAGATAAGGCAGCAACCGATAATGACTCTTTAGctaataatgaatctgaatctGAAAATGGAAGcaacaaaaatagtaaatgcTTACTGCCACATCAAATAAAAGTCGAGAGTCACGAGGAAACCGAGACGAgcaaaaataatgatatggatatagaaatctataataatgataaaccTGAATTTATTAAGTTGGAGTACAATTTCTCAAATAGTAGTACGAATTCAACGCATAGTGATAATATCCATGTTATACGCTTGTTCAAAGATAGTGTAAACGATTCTAACATTGTAAAATTAGAAGCTCCTCATGTGAGTAATGATGCATCGACTGAAGATAATGTTACATATACTCAGGAAGAAATTGTCGTTTCCAACGGAGAAGACGCTTACGAGATTATCAACTGTGATATATCCGAGCTCAATATGGAGAACTTGGAAAATATCGATCAGAGAGCTATTTGGCGACAGGACGACGGCACGTTTTTATGTGAATGCGGAGAGGTGTATACGGACCTTTCAGAATATGAAAAACACTTTGCCACTCACAACAATCACACGTGTCACATTTGCGGTAAGAATGTGGAATCAAAAGAGGTGTTGAAAAATCATTTGATGTTGCACGAAGAAGAAGATGAAATTGTTCCGTGTTCATATTGCTTGAAGAAAATTAAACGCAGCATGTTATCTGTTCATATAAGTGTGAATCACATACAGCATAGACCGACTTGCACCATATGCAAAAGAACATTCGCAACGGAGCACAATCGCAAGCGTCACATGGCGACACATTTTGACAGTAAGCATCATGAATGTGATATTTGTCACGTCATATTCTATCAAAAGAAAACTTTTGATAACCATAAAATGCTACATGAGAATTTAGAATATCTGAATTGCAGCTCGTGCATGATGGTCTATTTGCCGGAAGAGGCTCACTTGCACGAAACTTGTGACTCGTCAATATTCGAGGAAGACTTAGAACCTAAAAAGCTCTCTTGCAATAAATGCGAGTGCACCTTTGATAATATGCTTTTGTTGCGGAATCATATAGAACTGGTTCATGCACAGCAAAGCAACTTGCTATGCCCCTCGTGTGGCTTAGTATTTCCAAATAAGAAAACATTGTTTGGACACTACTGCTCCAATCGTCAAAACAAGCCTAGGAACGTGAGAAGGTTTAGTTGCGGAGAATGTGGCAAGGGCTGCCCTAGTCAAGCCATGTTGACCATGCACGAACGTGTTCACACCAACGAGAGGCCATTCAAATGTAAAAAGTGCATCTTAGCTTTTAAGACTAAGACGCATCTCACCACTCATCAATTGACTCATACCCACGAAAAGAAGTTCTCTTGTTCTGTCTGTCCGAAAGCGTTTTCGCTGAAGGGAAATCTAGTCGTGCATATGCGCACACATACAGGAGAACGCCCGTACGCTTGTAATATATGCAGTCAGGCTTTTATAGAttctaaatacttaaaaaaacacaaacttCGCAGACACACTGCAGAAGAAAGTATGtggtaa
- Protein Sequence
- MGMDDPESPNEWAPFCRACLVTSNLRSVLNDDELRIKFKEITSIQINEEDELIALLCEDCIDVLCSAHQFRKQCLSIDDQIRAQLLKINNESSPENADDDANIILKKHINHNSLSDELPNDNDTDEDDLYVIVVNEEDKAATDNDSLANNESESENGSNKNSKCLLPHQIKVESHEETETSKNNDMDIEIYNNDKPEFIKLEYNFSNSSTNSTHSDNIHVIRLFKDSVNDSNIVKLEAPHVSNDASTEDNVTYTQEEIVVSNGEDAYEIINCDISELNMENLENIDQRAIWRQDDGTFLCECGEVYTDLSEYEKHFATHNNHTCHICGKNVESKEVLKNHLMLHEEEDEIVPCSYCLKKIKRSMLSVHISVNHIQHRPTCTICKRTFATEHNRKRHMATHFDSKHHECDICHVIFYQKKTFDNHKMLHENLEYLNCSSCMMVYLPEEAHLHETCDSSIFEEDLEPKKLSCNKCECTFDNMLLLRNHIELVHAQQSNLLCPSCGLVFPNKKTLFGHYCSNRQNKPRNVRRFSCGECGKGCPSQAMLTMHERVHTNERPFKCKKCILAFKTKTHLTTHQLTHTHEKKFSCSVCPKAFSLKGNLVVHMRTHTGERPYACNICSQAFIDSKYLKKHKLRRHTAEESMW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -