Pcon012062.1
Basic Information
- Insect
- Plectrocnemia conspersa
- Gene Symbol
- ZIPIC
- Assembly
- GCA_009617715.1
- Location
- VTFK01000141.1:439630-444557[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.14 12 7.0 2.2 1 23 485 508 485 508 0.89 2 13 0.92 81 4.4 0.7 1 23 593 615 593 615 0.96 3 13 9e-07 7.9e-05 23.3 1.0 2 23 618 639 617 639 0.97 4 13 2.8e-05 0.0024 18.6 0.4 1 23 645 667 645 667 0.98 5 13 0.00011 0.0093 16.8 3.2 2 23 674 695 673 696 0.95 6 13 0.12 11 7.2 0.2 6 23 710 727 709 727 0.97 7 13 0.00016 0.014 16.3 2.5 3 23 734 755 733 755 0.97 8 13 0.0071 0.62 11.0 0.0 2 23 771 791 770 791 0.97 9 13 0.0005 0.044 14.7 1.8 1 20 797 816 797 819 0.90 10 13 8.1e-05 0.0071 17.2 0.9 1 23 827 849 827 849 0.99 11 13 0.015 1.3 10.0 6.8 1 23 855 877 855 877 0.97 12 13 9.1e-06 0.0008 20.1 0.9 1 23 883 907 883 907 0.95 13 13 0.00054 0.047 14.6 4.3 1 23 913 935 913 936 0.96
Sequence Information
- Coding Sequence
- ATGGAGTTGGATTATCCGTACGAAATCGGGTCGGAGTCGCAGGAGTCGCCGGTTCGATTTTCGATCGGGCCGGACCTCGTCGAGTTGGGAGCCTGGTCGAATTCGAGTTTCGCGCTCGCGAACCGGCGAAGCGCGACCCGCGACGGGGACGAGACCTCGGAGCCGCGGGTTGTCGACCCCTCTCCCGGGACGACAGCGGGGCGGCGCGCCGGGCACGTCCCGACGCCCCGCGCCCCGATCGCCATGGAGCGCAACGCGCAGTGTCCCGTGTGCACGCTGTACCTGCGCGAGGGCATCACCCTCGACGTCCACCTCGACACCCATCCCAAGGACCAGGTGATCCGGGCGCTGTGCGCGCTGGCGAGGGCGCGCTCCCCGCCGCCTCCGCCCCGACCGTCCTCCTCGCTTTCGTCGTCGCCATTCTTCGAGGCCTTCCCGAGGCGCCGCGTCGGGATCGAGGTCGCGACGGCGGCCCTGGTGCGCGCCCCCCCGCCTCCGCCCACCCCCTCGCCGGCGCCCTTCTCTTACTCTCCGGCTTTCGTCCCCTCCCCCCCGCTGTCCCGGACCTACGAAGAGGAGCGCCGCCGAGCCCCCTTCACCGACCGGGTCCCCGCGCCCTCCCGCGCGCCCCCCTTCGGTGGTGTGGTCGTGCTGCAAACGTGCCAGCCTCCACAACGCGCCTCCGGTTTCCGGATCATCAGCGACGTGAAGATCGAACCGCACGTCCAGGCTTCGGACGACTCCGGTGCTCCGCGTTCCTTCCTCGGTGCCGCGCCGACGCCCCGCGACGCCTTCTCCGTCATCAGGAACGTCGGCAACCCGCCCGAGGTATCCGCGCCCCCCTCGCCCGAAAAGTCAGAGTCGCCGGACCGCTGGATCGAATCGCCTCCTCCGCCTGAGCCGGCGGACTCGGAGAAGGACGGGCCCGACGAGCGCGCCGACTCGATCGACCCCCTCGAGGACGACAAGAGGGAGCCCTACTCGTACGGGAGCGCGTCCGTTTCCCCTCCGCGTGAGCCGTTCGAAGAGGCGCCTGCGGAACCGGACGCGGACGACGCTTCTCGGTACGCATGGAGCGGTCCGCCGCTCGCAGACGACGCCGAGTTCGAAGATGCCGGCCCTGCCAAGATCGAACGCGACTACGTCGACGCTCCGGATCTTACTCGCCGTCGGACGTTCCCGGGCGGCGAGAAGGCGGAGCCGCTCAACATCCGCAGCGACGAGCGCATGCCGCCCAGGGGAGAGCTCTCCGAACAGGAAAGCACAGGCGACGCCGACGCTCCTTGGgcGTTTCGAGACATGGGCGGGTCGACATCTTATGACATTCTAGGAGGAGACGCGTGGCCTTCGGACGGCTCCGAGGCAGACGCGCATATCGACTCGCCGGGTCGCGACTCcgCCGGCATCGAAGACAATCCTATTGTAGTCTCCGTCAAACCGCCggagaaaaattacaaatgcgCCACTTGCGGCAAAGCGTTCGATTGCCCCAAAGAAAGGAGGGTGCACAGAACTAAGGAGCATCCGTCGACACCGAACATCGTCGAGAAGAGAAAGCGAAAGCAGACTTTCGACTGTGGGTCAGTCTCCGTCAAAAAGGAGACTTACGTGAAGACCGAAGTAGCGCCGATCGCGACGCATTCGTCGACCGATCTGGTCGCTTCGGTGTCCGTCGACGTGCCGATCGAATACGACCCGAATCCGAACACCGACGTCAAAGTCGAGAACGAGGTCAAAGTAAAGATTGTCAAAGTCGAGAAGAGAAAGCGGGGAGACTACGTCTGCGCCATATGCAAGACTGACTTCCTCAACGACACCGCCTTCCACGAGCACTTGAAGATTCATCCGTTGGAGTGCACGATTTGCGGGAAACTGTTCAACCGTAGATCCAATCTTCAACTGCATCTCAAGAGGCATTTGGGAATCAAAAATTACAAATGCGACGGATGCGGAAAAGCATTTATAACGAGACAGAAGATGTTAGAGCATAGAAACGTGCACACCGGAGAAGCTCCCGTCAAGTGCAATCTGTGCGATCTCACATTCCGTCGTTATTCCAACATGGCCCAACATCGAAATCGGCACCATctcaaagtgaaaaaaaagctGCGAGACTATATATGCGCGTGCGGGGAAGTGTTCCACTCGAAGAAGAAGCTCGCCTGGCACAAGGAGATCCACGACGACAAGCCCAAGGCGTGTCTGCACTGCAACGAGAAGTTCGTCCACGTCGCTTCTCTCACCAGGCACATGCGGCGGGCTCACAATAACTACTTTGTGCCCGACGAGAAGCGAATCAACGAAAACGTCCCGTGTCCGGTGTGCAACCAGGTGTACCTAAAGTCGTCCATCGAAGCGCACATGAAGACTCACGCGGGAGACAAGCCACACGCGTGCGTCATCTGCAACAAAAACTTCACCACCAAGTGGAATTTGAAGCTGCACAAGTGGACGCATGCTAACCGTTCCAGCAAGCCGTTTAAGTGCAAGCTCTGCAAGGGCGCCTTCGTCAGGCAGGCGGATTACACGTCTCATATGAACTCGCACAAGTCCATTAGGCCGTACACGTGCAACTACTGCGGATGCCAGTTTATCAGAAAGTACAATTGCTTAAGGCACGTGAAGGAACACGAGAATAAAAAGATGTACGCGTGCCAAGTCCCCGATTGCGGAAAGTCCTTTCATAGAAGTTACTACCTCACGGAGCATCTGAAGGTGCACTCGGGGGTTAGGCCGTACTCGTGCAACATTTGCGGCAAGACGTCCGGCACTAAATCCAATCACAACAAACACATCAAGATCCATCACGCGAGGGAACCCGTCACGACCGAAGGATGA
- Protein Sequence
- MELDYPYEIGSESQESPVRFSIGPDLVELGAWSNSSFALANRRSATRDGDETSEPRVVDPSPGTTAGRRAGHVPTPRAPIAMERNAQCPVCTLYLREGITLDVHLDTHPKDQVIRALCALARARSPPPPPRPSSSLSSSPFFEAFPRRRVGIEVATAALVRAPPPPPTPSPAPFSYSPAFVPSPPLSRTYEEERRRAPFTDRVPAPSRAPPFGGVVVLQTCQPPQRASGFRIISDVKIEPHVQASDDSGAPRSFLGAAPTPRDAFSVIRNVGNPPEVSAPPSPEKSESPDRWIESPPPPEPADSEKDGPDERADSIDPLEDDKREPYSYGSASVSPPREPFEEAPAEPDADDASRYAWSGPPLADDAEFEDAGPAKIERDYVDAPDLTRRRTFPGGEKAEPLNIRSDERMPPRGELSEQESTGDADAPWAFRDMGGSTSYDILGGDAWPSDGSEADAHIDSPGRDSAGIEDNPIVVSVKPPEKNYKCATCGKAFDCPKERRVHRTKEHPSTPNIVEKRKRKQTFDCGSVSVKKETYVKTEVAPIATHSSTDLVASVSVDVPIEYDPNPNTDVKVENEVKVKIVKVEKRKRGDYVCAICKTDFLNDTAFHEHLKIHPLECTICGKLFNRRSNLQLHLKRHLGIKNYKCDGCGKAFITRQKMLEHRNVHTGEAPVKCNLCDLTFRRYSNMAQHRNRHHLKVKKKLRDYICACGEVFHSKKKLAWHKEIHDDKPKACLHCNEKFVHVASLTRHMRRAHNNYFVPDEKRINENVPCPVCNQVYLKSSIEAHMKTHAGDKPHACVICNKNFTTKWNLKLHKWTHANRSSKPFKCKLCKGAFVRQADYTSHMNSHKSIRPYTCNYCGCQFIRKYNCLRHVKEHENKKMYACQVPDCGKSFHRSYYLTEHLKVHSGVRPYSCNICGKTSGTKSNHNKHIKIHHAREPVTTEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -