Pcon013705.1
Basic Information
- Insect
- Plectrocnemia conspersa
- Gene Symbol
- -
- Assembly
- GCA_009617715.1
- Location
- VTFK01000126.1:680306-681909[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0012 0.1 13.5 0.5 2 23 166 187 165 187 0.96 2 11 1.1e-05 0.00093 19.9 6.0 1 23 193 215 193 215 0.97 3 11 0.00045 0.04 14.8 2.3 3 23 223 243 221 243 0.95 4 11 0.0068 0.6 11.1 4.1 1 21 249 269 249 272 0.93 5 11 3.7e-06 0.00032 21.4 2.7 3 23 281 301 280 301 0.98 6 11 2.4e-06 0.00021 22.0 0.3 3 23 309 329 308 329 0.98 7 11 0.00012 0.011 16.6 1.8 1 23 338 363 338 363 0.96 8 11 4.8e-06 0.00042 21.0 0.3 1 23 369 391 369 391 0.98 9 11 0.0002 0.018 15.9 2.8 2 23 398 419 398 419 0.97 10 11 0.19 17 6.5 1.8 1 23 425 448 425 448 0.94 11 11 0.0082 0.72 10.8 7.3 1 23 453 475 453 475 0.98
Sequence Information
- Coding Sequence
- ATGGAGGATAAAGCTATTTCGATAATCAAATTCTGCAGAACGTGTCTATCCTCTACAGAAccgctaattaatttattcaacgaGAACGATAACATCAATGGTTCTAAAATATCTCTTTGCGGAATGATTTTATCTTTTGCTTATATTGagGCGAGTTTTGGCGATGGACTATCTGATGAAATATGTCAAAGTTGTGCAGAAAAAACTTACATAGCTTATAATTTCAAAAGCTTATGTGAAAAATCCGACACTATACTAAGAAAATCTAATTTGCAAAATaacgaagaaaaaataaaaactgaaccTAGTAAAATAAGTTCAGAAATATACAAAGATATAACATTGGAAGACTTTACTCTAGaatcgaatttaaaaaatgtttccgaTACAAAAACTAAAAAGAAAACGTCAAAATGTGATTTAGACATTAGTGACGACGATTTCAATCTTAAAGAAGAACTTATTTTACCAATATCGTCCACCGAACTGCAGATATCTTGCGCCGTATGCTCGGAAGCCTTTGAAAACCATGCTCTATTAcgagaacataaaaaaacgcaTCCATCAAACGTGAGGCATAATTGCCACGTTTGTGGAAAATCCTTCTCGCGAGTTCAAACACTACAGCATCACATGGTGACGCATACTGAAAACAGGGCTCATTTATGTCCAATGTGCGGTAAACGATTTCATTTAGCCGGTGGACTGAGACAGCATTTAAAGTATCATAGGGGAATCAAACCTCATATATGCGAAATGTGCAACAAGAGCTACTATAATCTGCATTTATTGAGAGAGCACGTTCGTTGCGCCCACTCGACCAATCGTTACAATAATAACTGTTCcatttgtaataagaaattcACCGCTAAATCAACGCTTAAGATGCATATGAAGACACATACTGGCGAGCGATCTCATGGATGCGAGATTTGCGGTAAAAGATTCACCAGAGCCGCCTATTTAAAGGCTCATTCTAGACAACACACTCAAGATCCACCGCCACGCATGTTCGTATGTCCACATGAAACGTGCGATCGGATGTACGTCACGAAAGCGTCCCTGAATATTCACATACGTCACCGACATACAAAAGAAAAACCTTTTACTTGCGAAATTTGCGAAAAATCATTTTCGTCTATGCCCGGATTGACTGAACATCGAAGAGTTCACACTGGAGAAAAGCGCGAAGAGTGCTTCTTATGCAAAAACCGTTTTGTCAATAAACAATCTTTGAAAAAGCACATGAGATTGCATACTGGAGAAAGGCCGTATCCGTGCGATCACTGCGAAGAGCGATTTTTATCAAGTTCGCGCCGTAACGAGCATGTGCAAACAAAACACATGGAAAGACAGCACGAGTGTTCCGTATGTCATAAACGCTTTCATTTAAAGAGAACTCTCAAAGGTCACCTTAGAATACATACAAGCGTGAAACGATTTCAAAATCCTCTTTTACAAATCAATGACGTCCCTGCGGCGAGCTCCGATGCAAAGCAAAATGTACCAGAACCGAGATTCGAAGttattgtatga
- Protein Sequence
- MEDKAISIIKFCRTCLSSTEPLINLFNENDNINGSKISLCGMILSFAYIEASFGDGLSDEICQSCAEKTYIAYNFKSLCEKSDTILRKSNLQNNEEKIKTEPSKISSEIYKDITLEDFTLESNLKNVSDTKTKKKTSKCDLDISDDDFNLKEELILPISSTELQISCAVCSEAFENHALLREHKKTHPSNVRHNCHVCGKSFSRVQTLQHHMVTHTENRAHLCPMCGKRFHLAGGLRQHLKYHRGIKPHICEMCNKSYYNLHLLREHVRCAHSTNRYNNNCSICNKKFTAKSTLKMHMKTHTGERSHGCEICGKRFTRAAYLKAHSRQHTQDPPPRMFVCPHETCDRMYVTKASLNIHIRHRHTKEKPFTCEICEKSFSSMPGLTEHRRVHTGEKREECFLCKNRFVNKQSLKKHMRLHTGERPYPCDHCEERFLSSSRRNEHVQTKHMERQHECSVCHKRFHLKRTLKGHLRIHTSVKRFQNPLLQINDVPAASSDAKQNVPEPRFEVIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -