Basic Information

Insect: Plectrocnemia conspersa
Gene Symbol: -
Assembly: GCA_009617715.1
Location: VTFK01000031.1:287149-289250[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.11 10 7.2 7.8 1 23 77 99 77 99 0.96

2 13 0.00031 0.027 15.3 3.6 1 23 137 159 137 159 0.98

3 13 0.00032 0.028 15.3 2.2 1 23 205 227 205 227 0.98

4 13 0.00033 0.029 15.2 2.7 1 23 274 297 274 297 0.97

5 13 0.061 5.4 8.1 3.7 5 23 341 360 338 360 0.92

6 13 0.0008 0.07 14.0 4.4 1 23 384 407 384 407 0.97

7 13 0.015 1.3 10.1 1.9 1 22 440 461 440 461 0.85

8 13 0.00018 0.016 16.1 4.2 1 23 466 488 466 488 0.99

9 13 1.8e-05 0.0016 19.2 0.6 2 23 495 516 494 516 0.96

10 13 0.0014 0.12 13.3 7.4 1 23 522 544 522 544 0.99

11 13 1.4e-07 1.2e-05 25.8 1.4 1 23 550 572 550 572 0.98

12 13 7.1e-06 0.00062 20.5 0.4 1 23 579 601 579 601 0.97

13 13 0.068 6 7.9 0.1 3 23 609 630 607 630 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.11	10	7.2	7.8	1	23	77	99	77	99	0.96
2	13	0.00031	0.027	15.3	3.6	1	23	137	159	137	159	0.98
3	13	0.00032	0.028	15.3	2.2	1	23	205	227	205	227	0.98
4	13	0.00033	0.029	15.2	2.7	1	23	274	297	274	297	0.97
5	13	0.061	5.4	8.1	3.7	5	23	341	360	338	360	0.92
6	13	0.0008	0.07	14.0	4.4	1	23	384	407	384	407	0.97
7	13	0.015	1.3	10.1	1.9	1	22	440	461	440	461	0.85
8	13	0.00018	0.016	16.1	4.2	1	23	466	488	466	488	0.99
9	13	1.8e-05	0.0016	19.2	0.6	2	23	495	516	494	516	0.96
10	13	0.0014	0.12	13.3	7.4	1	23	522	544	522	544	0.99
11	13	1.4e-07	1.2e-05	25.8	1.4	1	23	550	572	550	572	0.98
12	13	7.1e-06	0.00062	20.5	0.4	1	23	579	601	579	601	0.97
13	13	0.068	6	7.9	0.1	3	23	609	630	607	630	0.93

Sequence Information

Coding Sequence: ATGAGCTTAGAAAACAACGGGGATCAAgACCAAGATTGCGAACATCTCAAATTGATGCATCCGAATATTTCTGACGATCAAgataCTCGTTTTACGATGATTGACGATATCAGTTTGGAAGCGAGTGACATGGATATTGCAGacgaatttttaaaagaaatggcTTCTGAATcagataACATACAAGTCACTAACAATGAAGTTACAACTcaaattattgtgaaaatattcaGATGCATTCATTGTTTTAAGCATTTCAATAACGAAGAATGCTTAGAGAAACATATTCAAAATCACAAAGTGAAAACTGAAGTTTTTGAAAGACAACCTGCAGCTgaagaaattgtttttaaagacaattttcAAGATACAAAAAATGAAGATGTAACTCCGATTATAGGGAAGACGTTCAAATGCTCGCATTGTTTGGAGATTTTTAACGACGATGACTGCCTACAAAGGCATATGCAGATTCATAATAACGTAGCAGAAAATAAATGCGACAAAGTATTGCTAGCAACTAATGTACTTTATACAGAAGAAAATTTTATCAATGCAAAAATTGATAATGATTTATATGATGAAGATATAGCTTCAATTATAGGGAAAACGTTTGAGTGTTTGAAATGTTCGAAGCTTTTCAATGACGAAGATTGTCTTCAGAGACATCTTCAGATTCATAAAGACGAATCACGTATTAAACTCAAAATGCTAAAAGCTAAGCAATCGCTTGCTCGTACAGGAGCTAGCCTTAATGATTCAAAAGTCGCTAAAAGTGACTCAAAGAGTAAAGAtcaatctttaattaaaaatgattcatttaAGTGCGTACATTGTTTTCAGCTTTTTAGAGATGAATATAATCTTAGAAAACATCTTCTCATTTTACATAAAGATGTTGCAGATAATAATAAACCTGTAATAATCCACAAAAAAAAGCAATCTCTTGCAACTCGTGCTGTTGCTCAAACAAGAAAATCAATtctcaatgaaaataaaaataaagcaattaattgCATACATTGTTTACAACCTTGTAaagatcaatattatttaaaaaggcaTCTTCGCATCTTTCATAATGACTTACCAGACAATAAACTTGAAATAATGCTCAAAAATAAGCAGTCAATCGAGTTGAAGCAAATATTCGAATGCAAGAAATGTTTACagccatttaatgaaaaatattgtttgaagaGACATCTTCGCATTTTTCATAAAGATATACCGGAAGTAGAATATGAGAACATGTTAAAATCAGACCAATCACCTCCAAAACCAACGATTGTAAAAAGAGAACAAATAAAACGTGTATATAAATGTGAACGTTGCCCGAAAACCTTTCAACATGAACATTTAAAGgatatacatatgaatacagAATGCCCGGAATTTAAATGCGAACTTTGCGAAAAgacctttaattttaaatgcaaactcATTGAGCATATAAAATCCCACAAGGACGATAAAGATCTAAGGTGTGAAAAATGCGGAAAATTGTTCAAAACCAAACGATCGTTATTGGTTCACTTGATTATACACGAGGATGAAAAAAGATATAAATGCGAATTTTGTTCCAAATCGTTTCATTTTCATTATCTTCTTAAGCGGCATGTAATCACACATGAACTAGTTGCAAATTACAAATGTGAAATCTGCGATAAAATGTTCAAAACCAAGAGATCCCTCTCGCGTCATTTAGAAGTACATATAGGAGAAAGAGAAGGGTATAAATGTGGAGTGTGCGGgaaagtattcaaatataaatggtATCTAAGTGAACATGTTCTTTTGCACGTAGACAACACGGACGTTAACTGCGGCATTtgcggaaaattatttttaagcaaacaaTCTCTTGCCATACACACGGCTATTCAACACAGAAATTAG
Protein Sequence: MSLENNGDQDQDCEHLKLMHPNISDDQDTRFTMIDDISLEASDMDIADEFLKEMASESDNIQVTNNEVTTQIIVKIFRCIHCFKHFNNEECLEKHIQNHKVKTEVFERQPAAEEIVFKDNFQDTKNEDVTPIIGKTFKCSHCLEIFNDDDCLQRHMQIHNNVAENKCDKVLLATNVLYTEENFINAKIDNDLYDEDIASIIGKTFECLKCSKLFNDEDCLQRHLQIHKDESRIKLKMLKAKQSLARTGASLNDSKVAKSDSKSKDQSLIKNDSFKCVHCFQLFRDEYNLRKHLLILHKDVADNNKPVIIHKKKQSLATRAVAQTRKSILNENKNKAINCIHCLQPCKDQYYLKRHLRIFHNDLPDNKLEIMLKNKQSIELKQIFECKKCLQPFNEKYCLKRHLRIFHKDIPEVEYENMLKSDQSPPKPTIVKREQIKRVYKCERCPKTFQHEHLKDIHMNTECPEFKCELCEKTFNFKCKLIEHIKSHKDDKDLRCEKCGKLFKTKRSLLVHLIIHEDEKRYKCEFCSKSFHFHYLLKRHVITHELVANYKCEICDKMFKTKRSLSRHLEVHIGEREGYKCGVCGKVFKYKWYLSEHVLLHVDNTDVNCGICGKLFLSKQSLAIHTAIQHRN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -