Basic Information

Insect: Plectrocnemia conspersa
Gene Symbol: -
Assembly: GCA_009617715.1
Location: VTFK01000203.1:114143-121747[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00044 0.038 14.9 5.4 1 23 198 220 198 220 0.97

2 11 7.9e-05 0.0069 17.2 1.8 1 23 226 248 226 248 0.98

3 11 0.00014 0.013 16.4 2.0 1 23 254 277 254 277 0.96

4 11 0.11 10 7.2 2.8 1 21 283 303 283 305 0.94

5 11 0.00012 0.011 16.6 2.8 1 23 311 333 311 333 0.99

6 11 9.7e-06 0.00085 20.1 4.3 1 23 339 361 339 361 0.98

7 11 0.00034 0.03 15.2 0.9 1 23 369 392 369 392 0.96

8 11 5e-06 0.00044 21.0 2.6 2 23 399 420 398 420 0.97

9 11 0.00033 0.029 15.2 0.7 1 23 426 448 426 448 0.98

10 11 1.3e-05 0.0011 19.7 3.2 1 23 454 477 454 477 0.96

11 11 6.6e-07 5.8e-05 23.7 2.4 2 23 492 513 491 513 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00044	0.038	14.9	5.4	1	23	198	220	198	220	0.97
2	11	7.9e-05	0.0069	17.2	1.8	1	23	226	248	226	248	0.98
3	11	0.00014	0.013	16.4	2.0	1	23	254	277	254	277	0.96
4	11	0.11	10	7.2	2.8	1	21	283	303	283	305	0.94
5	11	0.00012	0.011	16.6	2.8	1	23	311	333	311	333	0.99
6	11	9.7e-06	0.00085	20.1	4.3	1	23	339	361	339	361	0.98
7	11	0.00034	0.03	15.2	0.9	1	23	369	392	369	392	0.96
8	11	5e-06	0.00044	21.0	2.6	2	23	399	420	398	420	0.97
9	11	0.00033	0.029	15.2	0.7	1	23	426	448	426	448	0.98
10	11	1.3e-05	0.0011	19.7	3.2	1	23	454	477	454	477	0.96
11	11	6.6e-07	5.8e-05	23.7	2.4	2	23	492	513	491	513	0.96

Sequence Information

Coding Sequence: atgtCCAAAAAGATGGCATCGAAAACACGCATCAAAATAGAAGAGAACAGCACTTCTCTTATTCAGTCCTACatcaatacttttaataaagaaatcgaAGAAAATGGAAGTGAAATTAATGTTTCACAGTGCACGGTCCTTCCCGGCAACGTCGAAATCAGGGAAGTGGAAACCAACGAAGAGAACGTTGTCGACGAAGATGCCACCAATGGGACGTATTTTGTGGATTCGCAGGGCCACTATTACTATCAGACGGATTCGCAACAAGTCATAACTTCAGTCGGCGATGTTTTGAATGGCAACAATCAAatcATGTTGGCTGAAGACTCGAATAATGAGATGCTCGTCGATACAGCTGAAGGATTTCAAACAATTACTTTAGTGCCATCGGAGGATGTGAGCTATGTGTTTGTCGTCCAACAAGGAGATGAAAAGACACAGACCGTCGTACCCGAGATTGACAGCAACTTGACTGTGTACGATTTTGACGAAAACGAAGACATGGAAGACAGCAATCACAAATTAGATTGTATAGACGAAGACGATAAATTGAAAACCTTCACTAAAAAACAGCAGCCAATAACTAAACCTCACATGTGTTCATACTGTTCGTATACAACTTCAAAAAAATACCTTCTGTCAAGGCACATGAAGTCGCATTCCGACGAGAGACCGCACAAGTGCACCGTATGCTTGAGAGGTTTCAAAACGTTGGCCTCGCTTCAAAACCATGTCAACACCCATACTGGTACCAAACCGCACAAGTGTCGCTTCTGTGGTAGTGCCTTCACCACTTCAGGAGAACTTGTACGCCATGTTCGCTATCGCCACACTCATGAAAAACCACACAAGTGTGATGAATGCGAATATGCCTCCGTCGAATTGTCCAAGCTAAAGCGCCATGCCCGCTGCCACACTGGAGAGAGACCTTTTCAATGTCCCCATTGCACATACGCTTCGCCCGATACATTCAAATTGAAGAGACATCTACGCACGCACACAGGTGAAAAGCCATACCAATGCGAGTATTGTAACATGTGCTTCACGCAGTCAAACTCGTTAAAGGCTCACAAGCTCAGACACAACGTTGCTGAAAAGCCGGTTTTTGCATGCGAGTTGTGTCCGACTACTTGTGGCCGCAAAACCGACCTGAGGATTCACATCCAAAAGCTACACACGTCCGACAAACCATTGAAATGCAGAAGATGCGGTAAATCGTTCCCGGATAGATACACGTTCAAAACACACATCAAGacCCACGATGGGGAAAAATGTTTCAAGTGTGACATGTGTCCGTATGCATCAGCATCCATGAGGCACCTGACTTCGCACATGCTTGTTCACACCGATGAAAAACCATACGCTTGCGAACATTGCGAGCAGTCTTTTAGACAAAAGCAGCTATTGAGACGTCATCAAAATTTGTATCACAATCCCGAGTATATTGCGCCTTTGCCGAAGGAGAAGACTCAAGAGTGCGTCGAGTGCGGTAAACACTTTAGACACAAGGGCAACCTCATCAGGCACATGGCGATGCACGATCCTGAATCAGGAGTTCACGAGCAGAGTCTTCAGCTCAAATTGGGCAGGCAGCGTAAGGTACAGCTCAACTCGATGTCCGAGgATAAAGAAAACGACGAAGAAGAAGAAGATGAAGAGGAGGAATATGAGGAGGATGAATCAAAGGATCCTAACGATGACATGCCTCACTATGTTGTTTTCGAAGTTATTCAGATGCCAGAGGACAGTTCAGACCAGATGGGTGAAAAAGAAGATGAGAAAGAGGTTGCTACGACTCGTTTCAAGAATATCGAGCTTGTCAATGGCAAGGAGCCAGCGAACACGGAAAAAGATGTGGAGAATTGCTTTGGTTTTGAAGTGGAAAATACAGAAGATGATCTCAACGACCAAAAGCTTAGCTTGTACGAGATGAAGATGCTGCGGGAATAG
Protein Sequence: MSKKMASKTRIKIEENSTSLIQSYINTFNKEIEENGSEINVSQCTVLPGNVEIREVETNEENVVDEDATNGTYFVDSQGHYYYQTDSQQVITSVGDVLNGNNQIMLAEDSNNEMLVDTAEGFQTITLVPSEDVSYVFVVQQGDEKTQTVVPEIDSNLTVYDFDENEDMEDSNHKLDCIDEDDKLKTFTKKQQPITKPHMCSYCSYTTSKKYLLSRHMKSHSDERPHKCTVCLRGFKTLASLQNHVNTHTGTKPHKCRFCGSAFTTSGELVRHVRYRHTHEKPHKCDECEYASVELSKLKRHARCHTGERPFQCPHCTYASPDTFKLKRHLRTHTGEKPYQCEYCNMCFTQSNSLKAHKLRHNVAEKPVFACELCPTTCGRKTDLRIHIQKLHTSDKPLKCRRCGKSFPDRYTFKTHIKTHDGEKCFKCDMCPYASASMRHLTSHMLVHTDEKPYACEHCEQSFRQKQLLRRHQNLYHNPEYIAPLPKEKTQECVECGKHFRHKGNLIRHMAMHDPESGVHEQSLQLKLGRQRKVQLNSMSEDKENDEEEEDEEEEYEEDESKDPNDDMPHYVVFEVIQMPEDSSDQMGEKEDEKEVATTRFKNIELVNGKEPANTEKDVENCFGFEVENTEDDLNDQKLSLYEMKMLRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -