Pcon018664.1
Basic Information
- Insect
- Plectrocnemia conspersa
- Gene Symbol
- -
- Assembly
- GCA_009617715.1
- Location
- VTFK01000226.1:770099-774565[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.5e-05 0.0022 18.8 0.5 2 23 256 277 255 277 0.96 2 14 2.8e-05 0.0025 18.6 0.8 1 23 281 303 281 303 0.98 3 14 0.0038 0.33 11.9 0.8 2 23 309 329 308 329 0.96 4 14 0.00048 0.042 14.7 1.5 1 23 336 359 336 359 0.94 5 14 0.0092 0.81 10.7 8.0 1 23 366 389 366 389 0.98 6 14 5.1e-05 0.0045 17.8 0.4 2 23 396 417 396 417 0.97 7 14 6.2e-05 0.0054 17.5 1.7 2 23 623 644 622 644 0.96 8 14 0.029 2.5 9.1 5.8 1 23 648 670 648 670 0.96 9 14 0.00036 0.032 15.1 5.3 2 23 676 697 675 697 0.97 10 14 0.031 2.7 9.0 1.1 1 23 704 727 704 727 0.88 11 14 0.00021 0.018 15.9 4.1 1 23 734 757 734 757 0.98 12 14 7.9e-05 0.0069 17.2 0.1 1 23 763 785 763 785 0.98 13 14 5.9e-06 0.00052 20.7 3.2 1 23 791 813 791 813 0.99 14 14 3.2e-06 0.00028 21.6 4.5 1 23 819 841 819 841 0.98
Sequence Information
- Coding Sequence
- atgaatctaaatatattaacaaaattttgtcAATGTTGTGTTTCTGGAGAGAACCTTATGCCAATTTACTCTCAAAAAGACCTAATAGAGCCATATTGCAATATGTTGTCgatgtatttttcaatgcaggttCTAGAAAGTGATTTATTGAatggtcaatattttatttgtaatgtttgCAGACCAAGATTAAaagataactatttatttaagtgtCAAGTTGAAGAATCTCAAAAgaaaattaagaattattttaaagagaaaGAGCTATTGGATATATCTCCGTTACCAGagGATTACTTTGATTCAAatgatagtttatttaaaacagaatatttaGAAGAAGATCTTGAAGATAACAGCAACATTTCTTTTCAATTCCctgattatatagaAGAAAATGATGAAATCACAaatgtagaatatttaaaagacGAAGATTATGTTCATTCGAATGCTGATGATTTGGAATTTCAATCGCCACAAAAcaatttcagttttaatttggtttccgtagagaagaaaaataaaacaattacgaAGCAGCCGAATGATCTGAATACGCATTATGATGTATTTTCCAAAGATGCATATGAGAAGAATAAGAATTTGTTAAATTCGAGTGAAAATTATGAcaataaacaaagaaaaataaagattaacaTCGATCAAGTTTCTAAAGAATATTTGCTTAACTATAGACGTTTATATGATAGATTTAGATATGCAAAGGCGATACCTTTTAAATTAGACGAGTCGGCCATCGAGTGCCAAATTTGCAATGAGTCATTTTCGACGCACAAACTATTGGTGTCTCACATGGCTGTACATTATGCCAATTTTATATGTGATTTGTGCGGTAAATCATTCGTACTGAGGAATCATCTGATCGGACATATAAAGAGGCACAGCTTAGACAGAATTTCTTGTTCTGTTTGTAATAAGCTTTTGAAGAAAGCCAGTTTGACCAGGCACATGCGGATGCACAATGGCAATATATTGGTTTATGCTTGTCCGCATTGTGACGAGAGATTCAAAAGTTTCAGTTTGCGAATTAATCATATGGCACAGAAGCATAATGTGGATGTTTATAAATATCCTTGCAAGATTTGCTCTAAAAAGTTTCACATGGCCAGTTGTCTTTCGAAGCATGTGAGGCGATGTCATTTTCAAGAGCTGAATGCGACTTGCGAAGAATGCGGAAAGGGATTTTTCGATAAGAAATCTCTCGGCGAACATATGTTGAAACATTCGGGCgaaaaaaagtttcattgtGAAATTTGTTCGAAATATTACtttTCTACCCCAGACGGTGACGCGgaatataattatctaatatgTCAGGATTGTATAAATCACTTGCAATTATCATACAAGTTCATAACTCAAGTTGTAAAAGCGCAAGCCTCCATTCAAAAAGAAATCGTTAAAACAGAACCTGGTATTAAATTAGAGGAAATAAAATCAAAcgagaataatacattttttttagaagatCAATCAGATAATGATTTATTCGAAGAAgataaaagtaacatttttcagtttgaccaaataaataaagaaagctCTGATTATGAATCAAGAATTACTAAAAAGCTTCAAGTCAAATCAAAAGCAAAATTGAAAAATCCCAAAAATGATAAAGATATAGTATCGGAGTTGGATTCAAATAATGAAGATGATTACTTGGACagaacaataaattattcagaTATGAGTGACGATGATTTCAAATCGTCGAATCGAGAATTAATCACCAACATAATttcaaatagtaataaaaataaagcgttAAAAAATCGACTTAGCTCTAATGCATACAAAGGTGAAAAAGAGCCGTTTAAGCTTAACAAAAACGATCTAATGTGCAATGTGTGCAACGAATCCTTCCCTTTACACTCGCACTTGGTTCGCCATATGTCTATCCATTTTCCTAATCACATATGTCACATTTGCGCTAGAACATTCACGACGCATAGGAAATTAATGGGTCACGTTTCGAGACATTCGCCAACGTCGAAGACGTGCAAACTATgcgataaaaaattcaaaggcACTCAGAACTTACATACGCACATGAGGCAGCATCAGAATCCGGATTCGATTTACAAATGTCCGCATTGTCCCGCACGCTTTTCTATATATTACAAACGAGTCAAGCATCTGATCGACGTTCACAACGACGAACCGAAGAAATATAAATGCAAGCAGTGTCCGAAACGGTACTTTCAAGCTTGCTCGCTCACCAGACACGTCAAAAGTGTACATCTGCAAGAGAGGAATTATACCTGCGCCGAGTGCGGTTACGGTTTCTATGACAAGAAAGGTCTGGTCGGACATATGCTGAAACACACTGGAATCAAGAATTACCAATGCCAAGTTTGCCATAAATCTTATGGTAGAAGATACACTTTGAATGAACATATGAAGATACATAATAACATCAGAAAGTTTGTGTGTTCTGTTTGCAATAAGTCGTTCACTCAAAAGTGTACTCTAAAGGGCCATATGAAGACTCATGCTAAGGTTGAACCAAAGATtgattag
- Protein Sequence
- MNLNILTKFCQCCVSGENLMPIYSQKDLIEPYCNMLSMYFSMQVLESDLLNGQYFICNVCRPRLKDNYLFKCQVEESQKKIKNYFKEKELLDISPLPEDYFDSNDSLFKTEYLEEDLEDNSNISFQFPDYIEENDEITNVEYLKDEDYVHSNADDLEFQSPQNNFSFNLVSVEKKNKTITKQPNDLNTHYDVFSKDAYEKNKNLLNSSENYDNKQRKIKINIDQVSKEYLLNYRRLYDRFRYAKAIPFKLDESAIECQICNESFSTHKLLVSHMAVHYANFICDLCGKSFVLRNHLIGHIKRHSLDRISCSVCNKLLKKASLTRHMRMHNGNILVYACPHCDERFKSFSLRINHMAQKHNVDVYKYPCKICSKKFHMASCLSKHVRRCHFQELNATCEECGKGFFDKKSLGEHMLKHSGEKKFHCEICSKYYFSTPDGDAEYNYLICQDCINHLQLSYKFITQVVKAQASIQKEIVKTEPGIKLEEIKSNENNTFFLEDQSDNDLFEEDKSNIFQFDQINKESSDYESRITKKLQVKSKAKLKNPKNDKDIVSELDSNNEDDYLDRTINYSDMSDDDFKSSNRELITNIISNSNKNKALKNRLSSNAYKGEKEPFKLNKNDLMCNVCNESFPLHSHLVRHMSIHFPNHICHICARTFTTHRKLMGHVSRHSPTSKTCKLCDKKFKGTQNLHTHMRQHQNPDSIYKCPHCPARFSIYYKRVKHLIDVHNDEPKKYKCKQCPKRYFQACSLTRHVKSVHLQERNYTCAECGYGFYDKKGLVGHMLKHTGIKNYQCQVCHKSYGRRYTLNEHMKIHNNIRKFVCSVCNKSFTQKCTLKGHMKTHAKVEPKID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -