Basic Information

Insect: Plectrocnemia conspersa
Gene Symbol: -
Assembly: GCA_009617715.1
Location: VTFK01000024.1:462912-471781[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.11 10 7.2 0.1 2 20 69 87 68 91 0.93

2 16 0.0026 0.22 12.4 1.1 1 23 98 120 98 120 0.98

3 16 1.8 1.6e+02 3.5 0.5 9 23 138 152 127 153 0.90

4 16 2.8e-05 0.0024 18.6 4.1 1 23 236 258 236 258 0.97

5 16 8.1e-06 0.00071 20.3 0.4 2 23 508 529 508 529 0.98

6 16 0.0012 0.1 13.5 0.2 1 23 535 557 535 557 0.98

7 16 2e-06 0.00018 22.2 0.3 3 23 567 587 565 587 0.96

8 16 7.4e-05 0.0065 17.3 3.1 1 23 593 615 593 615 0.98

9 16 0.00096 0.084 13.8 4.4 1 23 839 861 839 861 0.97

10 16 1.1e-07 9.6e-06 26.2 1.1 1 23 867 889 867 889 0.99

11 16 0.064 5.6 8.0 3.1 1 23 895 918 895 918 0.93

12 16 0.0018 0.16 12.9 0.9 1 23 924 946 924 946 0.98

13 16 0.11 10 7.2 1.5 1 23 952 975 952 975 0.97

14 16 0.00039 0.034 15.0 4.4 1 23 981 1003 981 1003 0.98

15 16 9.5 8.4e+02 1.2 10.9 1 23 1009 1031 1009 1031 0.98

16 16 6.2e-05 0.0054 17.5 2.1 1 23 1037 1059 1037 1059 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.11	10	7.2	0.1	2	20	69	87	68	91	0.93
2	16	0.0026	0.22	12.4	1.1	1	23	98	120	98	120	0.98
3	16	1.8	1.6e+02	3.5	0.5	9	23	138	152	127	153	0.90
4	16	2.8e-05	0.0024	18.6	4.1	1	23	236	258	236	258	0.97
5	16	8.1e-06	0.00071	20.3	0.4	2	23	508	529	508	529	0.98
6	16	0.0012	0.1	13.5	0.2	1	23	535	557	535	557	0.98
7	16	2e-06	0.00018	22.2	0.3	3	23	567	587	565	587	0.96
8	16	7.4e-05	0.0065	17.3	3.1	1	23	593	615	593	615	0.98
9	16	0.00096	0.084	13.8	4.4	1	23	839	861	839	861	0.97
10	16	1.1e-07	9.6e-06	26.2	1.1	1	23	867	889	867	889	0.99
11	16	0.064	5.6	8.0	3.1	1	23	895	918	895	918	0.93
12	16	0.0018	0.16	12.9	0.9	1	23	924	946	924	946	0.98
13	16	0.11	10	7.2	1.5	1	23	952	975	952	975	0.97
14	16	0.00039	0.034	15.0	4.4	1	23	981	1003	981	1003	0.98
15	16	9.5	8.4e+02	1.2	10.9	1	23	1009	1031	1009	1031	0.98
16	16	6.2e-05	0.0054	17.5	2.1	1	23	1037	1059	1037	1059	0.98

Sequence Information

Coding Sequence: ATGTTAAACTCCTGGATTCCAATCAATGCGGCGTCAGAAAATCCTTCTCAAGAAGATTATTCTTTAGAATTTAATGCTTCAAAAGTGAATGTTGAGTTCGTCGAAGAAAACTCTGAAGTTATTAatagtagtaataataataaggtaGGACCTGGACGACCTAGAAAAGATGGAGCACCGGTTGTGCGCAGAAGAacgAAGATCAAATGTGATGACTGTGGCGAGCAAGTTACCAGAGGGATTATGCTGGAACGACATTACTGGAAAAACCATCAGAACAAACTAAAATTCTACATTTGTCAAATATGTCCATCGTCATTCTTCACAGTGactGCACTTACGCATCATTATATAACGCATTGGAACTATGGTGAAGTTTGTCCGCTATCGAACGAGTGCTTGAAAACATTGCAGTTTTCCAGAAAAGCAAAACTGTTAAATCATTTGATAAACCATCACAatattgatactttaACTGAAGATCAAATCATAAACAGCACTATAAACGATGTGATGGAAGGATTAGCTTCTTTGAACAGTCTGACGCAGTCggatattgaaatatttcagaatgacTCGAGTAACCAGCAAAATATAACAATGgatactaataaaaatatgaaatctaacagtaaaaaaagaaaaacaatcaACACAAACATCGACGATATAAGgataataaaacctaaaattagaattaattttcataagtgTAATGTGTGTGAGAAATCTTTTAAGCATGAGACTGAATTAATAAAGCATTTGAATCTTCATAGTCAATGTGACGTTATCGGAAAaaaTGATACACAGCAAGCCATTGACATCAGCAGTATTCTCGATAACACAATCAATCCAGATACTACTATTTCATTATTACCAGCCGATAAAATGTTCGAAGAAAATTCTTTTCTTGACGTACCATTGATGAACGAAACGAATCCAAACATATTCTTAAATGAAAGTCAGTTTAATATACTGGTTAATGATACATTTGACAACATATCGAATGAGGTTGTATATGTTGGACACGATGCTGAGCAAACCAACTTTTTACTCACTGATAACTCTCTAGAAAACATTGAAATTACACCTCCGGAACTGAAAGATAGTATTAATGAGTTCAACAGTACTCAAGCATTAGATACATTGCAAGAGCaattgtattttgaaaattacccCATTATCAATCAAGAattagaaaaagaaaatatatttgataatagtaattttatccAGAATAATGCTAATTTCGGATATCAAATATCAGTGAATACTGAAGATGAAATACCGACTATTTCAATATCAGAAGATAATGTGATAAATGAAAGTTTGCCAGTAATAAACGATGATAATATTACTGTACCGATTGTTGAATCTcagcaatattatataatattaaATCAACCTGAAGAAAATACTGTGAATGATCATGTTGAAGGTACAAATTTCACGTTTGAAGCTATTGAACCCACTAAAGTTaaatataaaggCAAATGGTATAAGTACCCACCGCTAGCCAATCGGTGTGATATTTGCCCTGCGAGTTTTACCAAGCCTTCTGATTTGGTTAGACACAAGAAGACTCACGACCCTAAGAAGCAATACTCCTGCAATGTTTGCGGTAAATTGTTCACGTTGATATACGGACTGAGATCTCATGAAGCTACGCATTGTAATCCTTccattaaatctattatttgcAAGGTATGCGGGAAAACTTTTGCCCAAAAAAGGACACTGGCAGTTCATAGAAGAATACACGAGGGGGTAAAACCATATCCGTGTACAATGTGCTCGCATTCATTCCGGACCTCGACACAACTCAGTGTTCATACAAACACTCATTTCAAtgAACACGCAGATTTTAATAAAGTCGAATACATGAACGCCCTGGACCGCCGAagtcaacattttaaaataaaccaatcGCATTTACATGATAATCTGACATCTGATCATCTGTGCAGAACGTGTTTATCAATACACAGTCAAGTTTATTCGATATTTGACTTTTGTTATCACTCGACtgtgtatataaatgaaatgaTTACATCGCTGTGTTCGGTacagatacaaAAAGACGATAACCTTCCGAAGACTATCTGCGTAAGATGTATAGAAGATATAAAAGCAGCATATCAATTCAAGAAGAATTGCGAGAGAGCTGAAATAGTCATAAAAGAGCATCAAGAAGTAAGCGATTTGTATTATGGCCATAATGAAGACGGACTCTATCAAAAAAAAGAAATTGACGATCCTCTATTTGCAAATTTTCACATTGACAATTACCGAGGCTTGACCACCGTCGAAGTGAAACTGGACGAGTTTAAAACTGAAACTGACTACGACAGCATCAATGTAACCCGAGAAGTAAAACAGACAGCGACTCCAGATCCGGAATACGACGATCACTTCGGCGATGCCGATTCACCACAGAATCTCTCTCTAGAAACCcgcaaagataatttaaaaatatatgttaaaaaaggCATTTCGACGATTAAAACAAAGCTACACTATTGCAAATTTTGCGATTACGAATCGACAGAATCGTCTAACGTTAAGCGGCATATGCGGAAGCACACAAACGATAGACCTTACAAATGCGAAGTGTGCAATCGTAGTTTTACACGTTCCGAGTCTTTGAAGGAGCATTTGAGGATTCACAGTGGAGAAAAACCGTATTTGTGCGAACAGTGTCATTATAGGAGCTCTTCTAAAACTGGTCTGAGGGTTCATAAGATGAACAAACATTCGCAAGAAAAGAAGTTTCCTTGTAAGGAATGTAATTATAGAGCTAAAACTAGAACAGCTCTATTAACGCATGAAAAAACTCATTCTGGTATTAGAAATTTCTCTTGCGATCTTTGTCCGTACGAAGCTATACAGCTGCATTGCTTGGAACGTCATAAAATGATGATACATAGCGCTGAGAGGCCATTCGTTTGCGATAAATGCTCTTATAGATGTGTCAGCAAAAATTATTTGAAGATACATCAAAGGACACATCTGACGATTAAGAGGTTCTCTTGCGACGAGTGTCCATACACGTGTCACACACAACATAAGCTTAAGTGCCATAAGAGGATACATACGGGGGAGAAGCCTTACGAGTGTGACCATTGCGGATTCAAGAGCGCTTCCATGAGCTCTTTAAAGAGACATATCAAAAGCCATAGCGAGAGCGAGATTAAGTTATAG
Protein Sequence: MLNSWIPINAASENPSQEDYSLEFNASKVNVEFVEENSEVINSSNNNKVGPGRPRKDGAPVVRRRTKIKCDDCGEQVTRGIMLERHYWKNHQNKLKFYICQICPSSFFTVTALTHHYITHWNYGEVCPLSNECLKTLQFSRKAKLLNHLINHHNIDTLTEDQIINSTINDVMEGLASLNSLTQSDIEIFQNDSSNQQNITMDTNKNMKSNSKKRKTINTNIDDIRIIKPKIRINFHKCNVCEKSFKHETELIKHLNLHSQCDVIGKNDTQQAIDISSILDNTINPDTTISLLPADKMFEENSFLDVPLMNETNPNIFLNESQFNILVNDTFDNISNEVVYVGHDAEQTNFLLTDNSLENIEITPPELKDSINEFNSTQALDTLQEQLYFENYPIINQELEKENIFDNSNFIQNNANFGYQISVNTEDEIPTISISEDNVINESLPVINDDNITVPIVESQQYYIILNQPEENTVNDHVEGTNFTFEAIEPTKVKYKGKWYKYPPLANRCDICPASFTKPSDLVRHKKTHDPKKQYSCNVCGKLFTLIYGLRSHEATHCNPSIKSIICKVCGKTFAQKRTLAVHRRIHEGVKPYPCTMCSHSFRTSTQLSVHTNTHFNEHADFNKVEYMNALDRRSQHFKINQSHLHDNLTSDHLCRTCLSIHSQVYSIFDFCYHSTVYINEMITSLCSVQIQKDDNLPKTICVRCIEDIKAAYQFKKNCERAEIVIKEHQEVSDLYYGHNEDGLYQKKEIDDPLFANFHIDNYRGLTTVEVKLDEFKTETDYDSINVTREVKQTATPDPEYDDHFGDADSPQNLSLETRKDNLKIYVKKGISTIKTKLHYCKFCDYESTESSNVKRHMRKHTNDRPYKCEVCNRSFTRSESLKEHLRIHSGEKPYLCEQCHYRSSSKTGLRVHKMNKHSQEKKFPCKECNYRAKTRTALLTHEKTHSGIRNFSCDLCPYEAIQLHCLERHKMMIHSAERPFVCDKCSYRCVSKNYLKIHQRTHLTIKRFSCDECPYTCHTQHKLKCHKRIHTGEKPYECDHCGFKSASMSSLKRHIKSHSESEIKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -