Pcon009601.1
Basic Information
- Insect
- Plectrocnemia conspersa
- Gene Symbol
- L
- Assembly
- GCA_009617715.1
- Location
- VTFK01000030.1:2253239-2256472[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.6e-05 0.0014 19.4 0.2 1 23 10 32 10 32 0.98 2 21 2.6e-05 0.0022 18.7 0.3 1 23 56 79 56 79 0.98 3 21 0.58 51 5.0 0.2 9 23 120 135 115 135 0.94 4 21 0.017 1.4 9.9 0.0 1 23 162 185 162 185 0.96 5 21 2.8 2.5e+02 2.9 0.0 2 23 196 218 195 218 0.88 6 21 0.049 4.3 8.4 0.1 3 23 253 273 252 273 0.98 7 21 0.00033 0.029 15.2 0.0 2 23 296 317 295 317 0.92 8 21 0.001 0.088 13.7 0.1 3 23 327 348 325 348 0.94 9 21 0.49 43 5.3 0.0 1 13 353 365 353 370 0.88 10 21 0.15 13 6.9 0.1 1 23 385 411 385 411 0.95 11 21 0.0015 0.13 13.2 2.6 1 23 451 473 451 474 0.96 12 21 0.00057 0.05 14.5 1.5 2 23 549 570 548 570 0.96 13 21 0.036 3.1 8.8 0.2 1 23 580 602 580 602 0.95 14 21 0.087 7.6 7.6 0.5 2 23 610 631 610 631 0.96 15 21 5.5 4.8e+02 2.0 0.1 1 11 684 694 684 697 0.89 16 21 7.7e-05 0.0067 17.2 0.2 2 23 732 754 732 754 0.96 17 21 0.5 44 5.2 0.0 1 23 758 780 758 780 0.94 18 21 0.18 16 6.6 0.1 2 23 788 809 787 809 0.95 19 21 0.00071 0.063 14.2 0.1 1 23 817 839 817 839 0.97 20 21 0.25 22 6.2 0.8 1 23 846 868 846 868 0.93 21 21 0.0028 0.25 12.3 0.6 1 23 922 944 922 944 0.98
Sequence Information
- Coding Sequence
- ATGAAAACGCACGATAATCAAAAACCATTCCAATGCACAGTCTGTAACAGAGGCTACAACACTGCCGCAGCTTTGACGTCCCACATGCAAAATCATAAGAGAGGAGAGAATGGAGGTTCTTTGGGAATTGGTAGTCAAACTCCAGGAGCCCGCTCAATTCCTGGTTATAGATGTCTACAGTGTGGTGATCGTTTTAGACGCCCTGATTTGTTAcagAGTCACATGAATTCTGCGCACCCGTCCGAGGCAGCTTCGGAAGAAAGCTCCAGATCGTTAGCGCTTACACCACCGTCTCCTCGCAATCGTCCTCCTCACGCCTTATCTGCTAAACTGGCTTGTATATATTGCACCAAAGATTCCTTTACAAGTATGGATCAGCTACAAACTCATGTACGTTCCATGCATGGGGCTCTCTTGAGCGGAGAGCTACCTGCGTCGCCAGCTCAGAACGGCGTTCCTCCAGCTCGTTCGCCAGCATTGCATTTTCCTTGTGAAATGTGCACTATGAGGTTTCCTACTGGAGCGGCGCTCATCCAACATGCCACTACTTCTCACGCTAAAAGAAGTCCAGGAAGTTCTCCTTTAGTTTGTGTCGCATGCTCCGTTCCTTTCGATTCGCCAGCATCTTTGGCGGAACATTTCTTGTTGGTGCACGGCGAACAACTCCGTCCGACAGATTTGAGTAAAAAGAACACGGAAAGATCTGCAAAGAGACCCAGAAGTAGAGACGAACATTTGGGAGCTGGGACTTTATTATGTAACCAATGCGGCGCTGCTTTGCCTGATTTTGAATCGTTTAGAATCCATGTTCGATCGCATTTAGAAGGAAGTAATGTTGGACCAGGATCTAGTGGAGCACCGACAAGAGATAGAAGTCCACCTTTATCTTGTAGTCAATGTGGCGCAAGATTTAGCTCACCTGGTGCTTTGGAACGTCACGCAGCAGCTCACGTGCTAGCATTAGGTTCGGAATTTGGATGCCCTAGTTGTGCACGCGCTTTTACAAAACCGGATGAGCTACAAAAACATTTGATGGATCTCCATGCACATCATTTATATCGCTGTGCTATATGTAAAGAGATGTTCGATTCCAAAGTCGCTATTCAAGTAAGAGTACACTTTGCCGTAAAGCACAGCCACGAATGCAAAGTCTATAGATGTACGGTTTGTACATCTCCTCCAGTATCATTCAGAACTGAAGCTGAGTTCACCATGCATGTCCGTGCACAGCATCCTCAACACGTCCAACATCTCCAACAGCCTCCATCTGCAGTTAGATGCTTATTTTGTCGCGCAACATGCGCTTCTGAACTTGAAATGCAGTTTCACTTAGCTGCACATGCTGATCATTTTCGCTGTCCTATATGCAGAGAGGGATTCCATGTAGAGTTTTTATTGGATCGTCATATGCAAACTCATCATACTCCTCAAAACATCAACGGAAGCAGTCCCAAGCCAAAACAAGCAGGATCCGGTCGACTCAGTGTCAAAATTTTACCGTCCGAAAACAACAATACAAAGAAAGATAACAACTGTTGCGATATATGCGACAGGAACGACTTTCAGTCAGAGAACGAGCTCATGGCGCATCGTAAATTGGTTCATCACATCAAAACCGGCGGAAAGAATGGCGCAGTAAGTCTCAGTTGCGCTTATTGCAGCGAAAACTGTAAGTCAAGAGCTGAACTTGAAAACCACATGAAGAGCCACTCTCAAGGCAGCGCTACTGGTGGAAAACACAAATGCCTCATTTGTGACGAAGTCTTTCCGTCGACCGCGATATTGGCGGAGCATAAGCTGACCCACTGTAAAGTGTTAACTGGAAACACTTGCACCCAATGCAAAGTGACTCTAGCTAACGAAGATCAATTCTTCGCTCATCTCTCGCAACATTCCAACAACAATAACTCACCAGTGAGTCCCAGCTCTAATTCTCCGGTCACTTTGCCTACCCCGTGCGTTGTATGTCGACAAACATTACTAACAGATTTAGAAGCTAGAATCCATGCTAGATTCCATCTGAAAAATTCTGGAGTCATGTCTGAAACATTCCAATGCGCTTTGTGTCTCAAATCTTTTGAATTACAAGACGTGATACCGACTGGAGGGGAACGAAATAACGGGATACCAACCACACATGTCTGCAGAGAATGCTATAGACAACATAGTGGCATACCGCGATCTACTGAGCGTCGGTGTAATGAATGCCACTTAAAGTTCGAGTCTCCTTCAGCTTTAGAAGCACACATTGAATCTATTCATAGAAAAACTTATTCTTGTATTGAATGTCAAGCTTCGTTTGAGTCTGAAGAAGAAGTTCGCGTTCATGTCCAAGGACACGTAGCCGGAGGAGGATCATTAGAATGCAGACTATGCAGACGATCTTTAGGATCACCGCTTCAGTTACAAGCTCATTTAATTGAGCATACCTTTGCTGGTTGTGGAGGATTTACATGTTATCTTTGCTCGGCGGTGTTCACGGCTGCTTCTGCTCTTCAACAACACATGTTGGCTCACGGTCTTGCAGCAAGGCCTTACGATTGTGCTCGCTGTGGTCTCAAATTCTTTTTCAGAGCAGAATTAGATAACCATAGCTACAGTCATTTGGAAGAAGACGCAAGACTCAAGATTAACAATGCGGATCCGACAAAACATCcttattttgtaaatcaaaacGGTTTTCATGGAATCGATGCAATGTCTTACTTCACTTCGTCACCTCCAAATATGAAGAAGATCAAGACTTCGAATAGCCCTGATTTATTCAAATGCACTGAATGTCCagctgaatttaataatatgttagctCTACACGGTCATATGCGTCAACACGAAAAAGAAAGCAACGAAGAATCCGTTAAGCACGAAGAAGTTGCTATAAAACAAGAAGTAGAAGATAAAGGAGATGAATACATTGAAGTAGCGTCCCCAGCTCCTGTCGACCAGGGAAATGAAAAAAGGCAGTCTGTCGATAATTTAGAAACAAACGGCGAATTGCCGCTTATGTTGAGTCCGAAGAAAGAAAACGTTGAAAATTAA
- Protein Sequence
- MKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKRGENGGSLGIGSQTPGARSIPGYRCLQCGDRFRRPDLLQSHMNSAHPSEAASEESSRSLALTPPSPRNRPPHALSAKLACIYCTKDSFTSMDQLQTHVRSMHGALLSGELPASPAQNGVPPARSPALHFPCEMCTMRFPTGAALIQHATTSHAKRSPGSSPLVCVACSVPFDSPASLAEHFLLVHGEQLRPTDLSKKNTERSAKRPRSRDEHLGAGTLLCNQCGAALPDFESFRIHVRSHLEGSNVGPGSSGAPTRDRSPPLSCSQCGARFSSPGALERHAAAHVLALGSEFGCPSCARAFTKPDELQKHLMDLHAHHLYRCAICKEMFDSKVAIQVRVHFAVKHSHECKVYRCTVCTSPPVSFRTEAEFTMHVRAQHPQHVQHLQQPPSAVRCLFCRATCASELEMQFHLAAHADHFRCPICREGFHVEFLLDRHMQTHHTPQNINGSSPKPKQAGSGRLSVKILPSENNNTKKDNNCCDICDRNDFQSENELMAHRKLVHHIKTGGKNGAVSLSCAYCSENCKSRAELENHMKSHSQGSATGGKHKCLICDEVFPSTAILAEHKLTHCKVLTGNTCTQCKVTLANEDQFFAHLSQHSNNNNSPVSPSSNSPVTLPTPCVVCRQTLLTDLEARIHARFHLKNSGVMSETFQCALCLKSFELQDVIPTGGERNNGIPTTHVCRECYRQHSGIPRSTERRCNECHLKFESPSALEAHIESIHRKTYSCIECQASFESEEEVRVHVQGHVAGGGSLECRLCRRSLGSPLQLQAHLIEHTFAGCGGFTCYLCSAVFTAASALQQHMLAHGLAARPYDCARCGLKFFFRAELDNHSYSHLEEDARLKINNADPTKHPYFVNQNGFHGIDAMSYFTSSPPNMKKIKTSNSPDLFKCTECPAEFNNMLALHGHMRQHEKESNEESVKHEEVAIKQEVEDKGDEYIEVASPAPVDQGNEKRQSVDNLETNGELPLMLSPKKENVEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01367133;
- 90% Identity
- -
- 80% Identity
- -