Pcon004460.1
Basic Information
- Insect
- Plectrocnemia conspersa
- Gene Symbol
- -
- Assembly
- GCA_009617715.1
- Location
- VTFK01000699.1:30921-38433[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0013 0.11 13.4 0.2 2 23 216 237 215 237 0.96 2 14 0.002 0.17 12.8 0.3 1 23 240 262 240 262 0.94 3 14 0.00013 0.012 16.5 2.6 1 23 268 290 268 290 0.97 4 14 8.4e-05 0.0073 17.1 3.3 2 23 319 340 318 340 0.93 5 14 0.00047 0.041 14.8 3.2 1 23 346 368 346 368 0.98 6 14 0.054 4.8 8.3 2.7 1 23 373 395 373 395 0.94 7 14 4e-05 0.0035 18.1 6.4 1 23 401 423 401 423 0.98 8 14 0.0034 0.3 12.1 0.5 1 23 426 448 426 448 0.93 9 14 2.3e-05 0.002 18.9 3.7 1 23 454 476 454 476 0.96 10 14 7.2e-06 0.00063 20.5 2.2 2 23 483 504 482 504 0.97 11 14 0.00015 0.013 16.3 4.0 1 23 510 532 510 532 0.99 12 14 6.2e-07 5.4e-05 23.8 0.4 3 23 539 559 537 559 0.96 13 14 0.00093 0.082 13.8 9.9 1 23 565 587 565 587 0.99 14 14 0.0003 0.026 15.4 0.5 3 23 595 616 593 616 0.89
Sequence Information
- Coding Sequence
- ATGCCGGCGTCGGGGCTTCGCCCTTGGATGGTGTGGCCACCGATGCTGTGTACCCGTCGTTTTTCGGACTATCCGATGGAGACTTGCAGGGCTTGTCTTCGCAGGAGCGCTCAATTCCAAAGTTTGAATTCGGACAATTGTGTAGTACGATTTAGGGAATGCACATCGTTGGAAgcCAACGTCGATGATGAACTACCGCAGTGCATTTGTCAACCTTGCTATGATATGATtcatcagttttatttttttaaaaggttatgTCGGCAATCTGATGCAATTTTACGTCGGCGAAAtcagAATATGATTGATGTTAAACTTGAACATGATGACACAGGACCTCACAATGCTCGTGATTATCTACAAGGAACTGTAAcaattgGTGAAAGCATGGATGCTAATATACCTGAAGCATTTGATGCAATTAATTCTAATCGGggAACTAAAGTAGAAATTGAATTTTGCAGCATCAATAGTGATGCAATTATTAAAAGGAGGAATATGGACACAGatttgtatgatattaaaaatgaatccgATTCGAGCACAGACAATACAGATTTGTTATCAGACACTGAAACACACaaGGGTAGTTTAAAAATCAGCAGTGAAGACACCTTCAACAGATTGTGTTTATTGCGCGGTGTAAAATGTGAGgcatgtgaaaaaatattttatgataacgCTACACTCGCAAAACACAGGACAATTCATAAAGCGTTCAAGTGCGATTTGTGCGATAAAACGTTTGAATCTGAGCCTATCCTCTTGACTCACATGATCTTTCATAAGGATGAGAACGGATACAAATGCATACACTGCTCGTTGTCGTTTAAACGCCAAAATGGTCTCAAGAGACACATCCTTGTTCACAAAAAAGATGGATTGAAGTGCGAACGTGATAAAACATTgactaaagttaaaaaattcaaatgcgAACATTCAGAATCTGATATCAAATGTGACAAGTGCAAAAAGACGTTTAAAACCCTGCAGCACCTAATGAGACATTCTGTGGTTCATTTAGAAGAGAGGAAGTACAAGTGCGAACATTGCCCCAAGTCTTTCCAGTTTGTTTACATCCTCAAGCGTCATATGCTATCGCACGCCGATTATAACTTCATTTGCGACTGTTGCGAAAagacatttaaaactaaacgaGCGCTCGTCTTTCATATGTCCGTTCATACGggagagaaaaaatatcaatgcgaACACTGCTCGAAGTGCTTCTATCGCGACGAATCGCTCAAGCGACACTTGTTATCGCATAGCGATTTCAAATGCTACATATGCAAACAAACATTTGAATCGCAACAAGTTCTGATGACGCATGAAGCGGCTCATATCGACGTGATCGCTTACAAATGCGAACATTGTCCCAAGagctattttacaaaatacgaGTTGAACAAACATTCGATGTGGCATAAAGAAACGCGCGACGTCGAATGCAGCCGTTGCGATAAGATGTTCAAAAACAAACACGCTCTCTCCATGCACATGAAAGTCCACACGGCCGTAAAGATATTCAAATGCGAACACTGCTCGATAACGCTCAAGTACAAGAACAATCTCAAACAGCATCTTTTGACGCACAACGTCGCTGATATCATATGCGATATGTGCGGCAAGATGTTTAACAACAAGCGGTCGCTCAAGACGCACATGATCGTCCATACGATCGACAAGAAGTACAAGTGCGAGTACTGCTCCAACTCGTACAAGCACAGGCACAACCTCAAGCATCACCTCAACTCTCATAAGATCGTCGCCGACATTGAATGCATCGTGTGCGAAAAGATGTTCAAGTCTAAAAAATCACTGCAGAAACACATTACTAACGTTCACATGGGAAAAGGGAAAGTTTGA
- Protein Sequence
- MPASGLRPWMVWPPMLCTRRFSDYPMETCRACLRRSAQFQSLNSDNCVVRFRECTSLEANVDDELPQCICQPCYDMIHQFYFFKRLCRQSDAILRRRNQNMIDVKLEHDDTGPHNARDYLQGTVTIGESMDANIPEAFDAINSNRGTKVEIEFCSINSDAIIKRRNMDTDLYDIKNESDSSTDNTDLLSDTETHKGSLKISSEDTFNRLCLLRGVKCEACEKIFYDNATLAKHRTIHKAFKCDLCDKTFESEPILLTHMIFHKDENGYKCIHCSLSFKRQNGLKRHILVHKKDGLKCERDKTLTKVKKFKCEHSESDIKCDKCKKTFKTLQHLMRHSVVHLEERKYKCEHCPKSFQFVYILKRHMLSHADYNFICDCCEKTFKTKRALVFHMSVHTGEKKYQCEHCSKCFYRDESLKRHLLSHSDFKCYICKQTFESQQVLMTHEAAHIDVIAYKCEHCPKSYFTKYELNKHSMWHKETRDVECSRCDKMFKNKHALSMHMKVHTAVKIFKCEHCSITLKYKNNLKQHLLTHNVADIICDMCGKMFNNKRSLKTHMIVHTIDKKYKCEYCSNSYKHRHNLKHHLNSHKIVADIECIVCEKMFKSKKSLQKHITNVHMGKGKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -