Pcon005208.1
Basic Information
- Insect
- Plectrocnemia conspersa
- Gene Symbol
- -
- Assembly
- GCA_009617715.1
- Location
- VTFK01000059.1:730979-737892[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0067 0.58 11.1 3.2 1 23 172 194 172 194 0.98 2 21 0.00019 0.016 16.0 5.3 1 23 200 222 200 222 0.98 3 21 3.7e-07 3.3e-05 24.5 0.5 1 23 228 250 228 250 0.98 4 21 0.00011 0.0092 16.8 0.3 1 23 256 278 256 278 0.98 5 21 0.0065 0.57 11.2 5.4 1 23 283 306 283 306 0.94 6 21 1.3 1.2e+02 3.9 0.8 2 23 313 335 312 335 0.91 7 21 1.2e-05 0.0011 19.7 1.5 1 23 339 361 339 361 0.98 8 21 1.9e-07 1.7e-05 25.4 2.2 1 23 365 387 365 387 0.99 9 21 0.00086 0.075 13.9 2.8 1 23 559 581 559 581 0.98 10 21 1.8e-05 0.0016 19.2 6.3 1 23 587 609 587 609 0.98 11 21 9.2e-06 0.00081 20.1 1.3 1 23 615 637 615 637 0.98 12 21 3e-05 0.0027 18.5 1.0 1 23 643 665 643 665 0.97 13 21 0.11 10 7.2 2.1 1 23 671 694 671 694 0.93 14 21 0.00025 0.022 15.6 1.5 1 23 700 723 700 723 0.93 15 21 6.3e-05 0.0055 17.5 0.8 1 23 727 750 727 750 0.97 16 21 2.7 2.4e+02 2.9 5.3 2 23 759 780 758 780 0.97 17 21 0.00015 0.013 16.3 4.1 1 23 786 808 786 808 0.98 18 21 0.15 13 6.9 2.2 1 22 814 835 814 837 0.82 19 21 0.0012 0.1 13.5 2.3 2 23 845 869 844 869 0.93 20 21 0.12 10 7.2 1.2 1 23 875 898 875 898 0.85 21 21 8.7e-05 0.0076 17.1 0.5 1 23 904 927 904 927 0.95
Sequence Information
- Coding Sequence
- ATGAATAAAGattctgaaataaaattaacatacaacGACATGAACTTTGACAAAACTTTCAAAATTGAAgatgtgttaaaattaaatttttcacaaatgaTGTCACTACAGTCTACCAATAGTCATActcctaaaataataatcaataatttgaaTGAAAATGTTGAAAAAGACAATAATGATGATACGGATTTCGACGATCATTTTGAGGCCGAAGATATGATATTAAAGGTAGAGCGAACTGTCGATTACAATGAATTTTTACCAAATGAAATACAGATACAATCAATAATTGGCAGTTAcgactataaaataatagacaCCACAAGCAATAAAGCAACAGGCAATGTGAAAAtcaggattaaaaaaaaatcaacagttCCGTCGCATTTGTTTTATGGCAATCCAGACAAGAGAAATACAGTTAAAAAGATCTCATTAGAAGAGtttaaggAGAAACTTGAAACAGATGTAACATTGCAGAAaaagacaacaaaaaaaaagtgtaaagaGTATCATTGTaagaaatgcaaaaaaatatttcttaacttTCCAGAACTCAAGACTCATATGCTCGTTCATCAAAAAATGACACgGTTTAAATGTCCTGAGTGCCATAAATGTTTCCACGGAACTTCCGATTTGAATCTTCATGCTAGAGTGCACACTGGAGAGCGACCATTTGTATGCAACTTCTGTGAAAAAGGATTCtcgcaaaaaatcaatttgataagacATATTAGAATACATACCAACGAGAGACCGTACATTTGCgatatttgtgataaaaaatgtatcgatCAAGGAATCTTAGCTAAACATATGCGTATACATGAAAAAACACCATATTATTGCGGTACATGCAAAGAATCcttttgcaGCTCGGAGGATTTCAAAAATCATACATTGCATGAGCATTCCCAAAAGAATTATTTGAAATGTGGCACTTGTAGTTTATTCTTTCCTTCTATAGAATCTCGAAAAAAACATACAGAAGAGTTTCATTTAGAAATGTTTACGTGTGACATTTGCCAAAAAGAgtATCGAAATAAAAGCTTAATAACCAAACATATTATGAAACACATTTCCTGTTATAAATGCAAGTATTGCGGTAAGGACTTCACCTCTAAAACAGGCCTTCAACAACACATTCAACGTCATTTAGATTACAACCCATACGTTTGCGAGCATTCTACACTTTCCAAAATGAATGGAAATTCGGACGTGTTCATGAGCGCATCTCAAATAAACGACgatagtaattttattgtaaacaatgAGCAGGATCTATTAAACGATGAGAATATGAGTAAAATAAACGATCTGCTTAATGGCAAAGACTTTGGTGAGTTTTTCAGCGCCGAagagataatattaaaagttgaaGAACCTTTTATGGACGACGATAACACACTGGAATCTTTGCACAATGAAATGTTATCGCTGCCTAGTGAAGGTACCCATTTTAACGACGATCTGGGATGTATAGATGAAATATTAGATAATAATGATAATCATCATCAAGATGTTAGGagtaaatgtaagaaaaaatcaaCTATACCGACGTCTTTACTACTCGGAGGTCCGGATAAGAGGAATACGGTTGAAAAAATCTCATTGGAAGATTTTATGGAATCAGAAAAGACAAAGAAAAAAGTATCTAAAACTAAAGAgtttcaatgtaaatattgtaatgagCGTTTCACCAAATTTCAAGATATGAAATCACATACGATTGTGCATCAAAAAGAGACGagACACAAGTGTCCCGAGTGCCAAAAGTGTTTCACCAGAGCGCACGATTTGACTCTTCATAGTCGAGTGCATTCCGGAGAGCGGCCGTTTGTTTGCGAATTCTGTCAGAAAGGATTCACACAAAAGATTAATATGttaagACATGTTAGAACACATACTGATGACAGACCCTTCGCTTGTAAAATTTGTAAGAAGAGGTGTATCGATCAAGGTGATTTAGCTAGACATGTGCGGTTGCATAATGGAGAATTGCCGCACTTTTGTATGATTTGCAAAGCAAGatttgctAAATTGCACGAAATGAAGAAACACGTAGCTGTGGAACATTCCCAAGCGTCTTTCTTTGAATGTAACATATGCAATTTAACATTTTCCGATCGCAGTTCGAAAAGAAAACATAAAGAACAAGTACACTCTGTGCCTTTTATATGCAACGATTGTGGAAAAAAAAActttaaattaaaaatacagctaATCAGACACATGAGGGTGCACTCGGGAGATCAAAACCAAAAGAGCGAATGTAGATATTGTTGTAAACAATTCGCCACCAAAGCCACTTGTATCGCTCACATGAAACGCCACCTAGGATCTAAATCTCACGTTTGCGAAATATGCTCTATGAAGTTTTACGAGCGACACTTGCTAAACAGACACATTAGAACTCACACAGACGAACGACCCTATCCCTGCGACTTGTGTCCGATGACTTTTAAGACCTCTTACACTAGAAAATGTCACGTGAAGGGCGTACACGAACAGACGATGAGGATATGGAAGTGTGAATTCCGTAGCTGCAGGGAAAAATTCACCTCTAAGAAGAACATGATGCGGCACATGAGGAACGTACATTACAGGATGAAGCCGTTCGCCTGTGCACCATGCGGAAAAGCTTTCTCCAGTAAAACTAGTCTTGTTTGTCACGAGAAGAGCCGCCATACAACCGAACGAGAATACACATGTGCAGAGTGCTCTAAGCAGTTTGCATACAAGGTGTTATTGAAACGTCATATAGGATCTCAACATATGTAa
- Protein Sequence
- MNKDSEIKLTYNDMNFDKTFKIEDVLKLNFSQMMSLQSTNSHTPKIIINNLNENVEKDNNDDTDFDDHFEAEDMILKVERTVDYNEFLPNEIQIQSIIGSYDYKIIDTTSNKATGNVKIRIKKKSTVPSHLFYGNPDKRNTVKKISLEEFKEKLETDVTLQKKTTKKKCKEYHCKKCKKIFLNFPELKTHMLVHQKMTRFKCPECHKCFHGTSDLNLHARVHTGERPFVCNFCEKGFSQKINLIRHIRIHTNERPYICDICDKKCIDQGILAKHMRIHEKTPYYCGTCKESFCSSEDFKNHTLHEHSQKNYLKCGTCSLFFPSIESRKKHTEEFHLEMFTCDICQKEYRNKSLITKHIMKHISCYKCKYCGKDFTSKTGLQQHIQRHLDYNPYVCEHSTLSKMNGNSDVFMSASQINDDSNFIVNNEQDLLNDENMSKINDLLNGKDFGEFFSAEEIILKVEEPFMDDDNTLESLHNEMLSLPSEGTHFNDDLGCIDEILDNNDNHHQDVRSKCKKKSTIPTSLLLGGPDKRNTVEKISLEDFMESEKTKKKVSKTKEFQCKYCNERFTKFQDMKSHTIVHQKETRHKCPECQKCFTRAHDLTLHSRVHSGERPFVCEFCQKGFTQKINMLRHVRTHTDDRPFACKICKKRCIDQGDLARHVRLHNGELPHFCMICKARFAKLHEMKKHVAVEHSQASFFECNICNLTFSDRSSKRKHKEQVHSVPFICNDCGKKNFKLKIQLIRHMRVHSGDQNQKSECRYCCKQFATKATCIAHMKRHLGSKSHVCEICSMKFYERHLLNRHIRTHTDERPYPCDLCPMTFKTSYTRKCHVKGVHEQTMRIWKCEFRSCREKFTSKKNMMRHMRNVHYRMKPFACAPCGKAFSSKTSLVCHEKSRHTTEREYTCAECSKQFAYKVLLKRHIGSQHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -