Pcon001180.1
Basic Information
- Insect
- Plectrocnemia conspersa
- Gene Symbol
- -
- Assembly
- GCA_009617715.1
- Location
- VTFK01000267.1:218676-236604[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00016 0.014 16.2 6.4 1 23 215 237 215 237 0.97 2 13 7.2e-06 0.00063 20.5 0.7 3 23 251 271 250 271 0.97 3 13 0.011 1 10.4 2.2 2 23 280 301 280 301 0.98 4 13 4e-06 0.00035 21.3 1.5 1 23 307 329 307 329 0.97 5 13 6.6e-06 0.00058 20.6 1.9 1 23 335 357 335 357 0.97 6 13 4.7e-06 0.00041 21.1 5.7 2 23 364 385 363 385 0.97 7 13 6.3e-06 0.00055 20.7 0.4 1 23 391 413 391 413 0.98 8 13 2.5e-06 0.00022 21.9 0.9 1 23 419 441 419 441 0.99 9 13 0.00016 0.014 16.3 0.3 1 23 447 469 447 469 0.97 10 13 3.3e-06 0.00029 21.5 2.0 1 23 475 497 475 497 0.98 11 13 2.4e-06 0.00021 21.9 0.4 1 23 503 525 503 525 0.98 12 13 2.9e-06 0.00025 21.7 0.4 2 23 534 555 533 555 0.97 13 13 7.1e-06 0.00062 20.5 1.1 1 23 588 610 588 610 0.98
Sequence Information
- Coding Sequence
- ATGGTCGAGATGGGCGCCGGCGTCGAGTTGCGCCTCGACCGCGTTTGTCGCGTGTGCCTGCAGGAGAAGAAGGACATGCGCCCGCTCTTCCAGCAGCTGGTGGCCGACATGCTCATGGCGTGCGCCGCGGTTCAGATCTCCGACTCAGATGGTCTCCCAACTCAGCTCTGCCTACAATGTGTACATCAAGTATCTCGGTGCTACTCTTTCAAACAAAAGGTCGAACAATCCGACGCTCAATTGCGTACATACATAGAACAAAATTCCGATAAGgctAAAACAACAGAGGTTGAAGTAGAAAAGCCACTAGAAAACCACGAAATTAAGTTTCAATACACCTTAGATAGTTcACAAACCCAAGATCAAAACGACAATGTATCAAGATCGACTGTagtagaaacattttttataacttcaGAGCCAACGGGTGATCCCAATGTAACTGCTACTAGTAATACCACTACTACAACTACTGCACCGCAAGAAGTGGAGATTTCAACACAAGATCCTCCCATCGAAGTTGACAAATCTGATACAAATAACACAGAATCTAAAGAAGATGGAACTAACGAAGACTTGGCAGTGGAAAACTATTTAGaactCGCTACCTTTCAAGCTACCGTGTCTGTGAATCCCGGTAGACACATTTGTAATTTATGTCATAGAGAATTCAAACACGCCCGATGGTTAAAAATGCACATGCGCATGCATTCAAACTGGATCAAGgaaaaTTGCAAGAAACCTCCGATGTGTAACATTTGTCAACGAACGTTCAAAGGCCCCGGAATGTTGAAATTGCATATGAAAACTCACGAGGAACGACCTCAACGTCCGCCTACCTGTACTATATGCCAAAGTGTCTTCAAaaccaaaactattttataccGCCACCGACAGACGCATTTCGAAGAAAAAACACACCGGTGCACGATATGCGACAGAAGTTTTATCAGTAATTACGCATTAAAAGCCCATTACGCCCGTCACAGAGGAGAGAAGCCTCACACTTGTGCCACTTGCGGCAAATCATTCTATAATACTACAGATCTGAAGgtaCATATTCGACTGCACACTGGAGAAAAACCATTAACTTGCGGAGAATGCGGTAAGACGTTCCGAAGACACTCAACTCTCTGTCAACACATCAAAAAGCATAAAGGAATCCGCGATCATGTGTGTCCTGTTTGTAACAAGGCATTCTTCGAGGTCTCTAAGCTGACGGCTCATATGAGAGTCCATACTGGAGAGAAACCGTTTGAATGCAGCTATTGCGTGCGTCGTTTCGCACAACAGTCTGCGTTAATATACCATCAAAGGACTCACACGGGGGAGAAGCCGTATCCTTGCAAATTGTGCGACGCTCGGTTCACAACGTCTTCTGCTCGGAAAAATCATTTAGCCGTTCACACcggaataaaaaaGTATCCTTGTACGATATGCAATAAGGGATGCACAAATCGTTCCGAGCTTCGAATACATATGACGAAGCACACTGGTGAGAAATTGTTTCCATGCAACGAATGCGATCAGCGCTTCTCGACTGCGTCATATTTGGCTGTTCATAAGAGGAATCATAGtggagaaaataaaaaattattagtttgcTCTGTTTGTTCCaaagCTTATTCAGACTCCGCATCGTACAAAAGACACATTCGAACTCATTCGGCTGCCGAAAACGAAGCCAGTCAAGCAAACTCGAACAGCATGAGAGACGtgaacataaaaatagaaaaggCTCCGGTATCCGGCGCTAAAAACTACGCTTGCACGCTATGTTCGAAATCGTATACGCAAGGCCAAAACTTGAAGAAGCACATGATAACACATGGTGTACTGAACAcgatTCCGGTGGAAGGTGTTAGTTCACCGAATATCCAGCAACAGATAAGACAGTCTCAACAGTCTCAGACTCAACAAGTACAGACTCAACAAGTGCAGACTCAACAAGTACAGACTCAACAAGTACAGcagcaacagcagcagcagcaacaaTCGCAACAGATCGCTCAGCAACAGCAGCATCACCACCAGCATCAGATAGTACAGCAACCGCAGCAGCTACAAGTTCAGACTATACAGATACACCCACAGCATGTTTCCGCACATCACGGTCAACCGATACAGATACACACTGTTGGGGTTCATCAAGTGCAACAGCAGCAGGTGCATGTTTCTTCGTCAGGTTGTCAGCCAGTCCAAATACCAAATATTGTCCAGGTTCCTCCGGACACATCATGTTTGGGTCAACAGATCACCATGAGTCAAATTCACGATCAGACGGAGAGGCTACAATTTCAAAACTATCCCCTCCAAGCAGTCACAAACGTGTTAAGCGTTCCTCAAGGGCAGCCCGCGTATTACATCGTCGTCAACAACTCGAGTATAAAGAAAGATCCGCTCAGCACGGAGGGCGAAATGTAA
- Protein Sequence
- MVEMGAGVELRLDRVCRVCLQEKKDMRPLFQQLVADMLMACAAVQISDSDGLPTQLCLQCVHQVSRCYSFKQKVEQSDAQLRTYIEQNSDKAKTTEVEVEKPLENHEIKFQYTLDSSQTQDQNDNVSRSTVVETFFITSEPTGDPNVTATSNTTTTTTAPQEVEISTQDPPIEVDKSDTNNTESKEDGTNEDLAVENYLELATFQATVSVNPGRHICNLCHREFKHARWLKMHMRMHSNWIKENCKKPPMCNICQRTFKGPGMLKLHMKTHEERPQRPPTCTICQSVFKTKTILYRHRQTHFEEKTHRCTICDRSFISNYALKAHYARHRGEKPHTCATCGKSFYNTTDLKVHIRLHTGEKPLTCGECGKTFRRHSTLCQHIKKHKGIRDHVCPVCNKAFFEVSKLTAHMRVHTGEKPFECSYCVRRFAQQSALIYHQRTHTGEKPYPCKLCDARFTTSSARKNHLAVHTGIKKYPCTICNKGCTNRSELRIHMTKHTGEKLFPCNECDQRFSTASYLAVHKRNHSGENKKLLVCSVCSKAYSDSASYKRHIRTHSAAENEASQANSNSMRDVNIKIEKAPVSGAKNYACTLCSKSYTQGQNLKKHMITHGVLNTIPVEGVSSPNIQQQIRQSQQSQTQQVQTQQVQTQQVQTQQVQQQQQQQQQSQQIAQQQQHHHQHQIVQQPQQLQVQTIQIHPQHVSAHHGQPIQIHTVGVHQVQQQQVHVSSSGCQPVQIPNIVQVPPDTSCLGQQITMSQIHDQTERLQFQNYPLQAVTNVLSVPQGQPAYYIVVNNSSIKKDPLSTEGEM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -