Pcon015324.1
Basic Information
- Insect
- Plectrocnemia conspersa
- Gene Symbol
- zfpm1
- Assembly
- GCA_009617715.1
- Location
- VTFK01000198.1:695216-708557[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 1.7e-05 0.0015 19.3 4.1 1 23 75 97 75 97 0.98 2 34 4e-05 0.0035 18.1 0.9 1 23 103 125 103 125 0.97 3 34 0.0042 0.37 11.7 5.2 1 23 130 152 130 152 0.97 4 34 0.00028 0.025 15.5 1.7 2 23 160 181 159 181 0.96 5 34 0.027 2.3 9.2 8.5 1 23 185 208 185 208 0.96 6 34 1.6e-05 0.0014 19.4 0.9 2 23 214 235 213 235 0.96 7 34 0.0083 0.73 10.8 0.8 1 23 240 262 240 262 0.97 8 34 0.00012 0.01 16.7 1.1 1 23 268 290 268 290 0.98 9 34 0.0013 0.11 13.4 4.6 1 23 294 317 294 317 0.98 10 34 0.0039 0.34 11.8 1.5 3 23 324 344 322 345 0.93 11 34 0.0006 0.053 14.4 1.0 1 23 349 371 349 371 0.97 12 34 4.7e-05 0.0041 17.9 2.5 1 23 377 399 377 399 0.98 13 34 4.5e-06 0.0004 21.1 2.9 1 23 405 427 405 427 0.99 14 34 0.0026 0.23 12.4 2.0 1 23 433 456 433 456 0.95 15 34 0.15 13 6.9 3.3 1 23 462 484 462 484 0.98 16 34 8.7e-06 0.00076 20.2 1.9 1 23 490 513 490 513 0.93 17 34 0.019 1.7 9.7 0.9 1 23 519 542 519 542 0.95 18 34 0.0053 0.46 11.5 2.3 1 23 548 570 548 570 0.97 19 34 4.1e-06 0.00036 21.2 2.8 1 23 576 598 576 598 0.98 20 34 0.00053 0.046 14.6 8.6 1 23 604 627 604 627 0.96 21 34 0.00025 0.022 15.6 1.6 2 23 633 655 632 655 0.96 22 34 0.0055 0.48 11.4 2.9 1 23 665 687 665 687 0.97 23 34 8.7e-07 7.7e-05 23.3 3.3 1 23 693 715 693 715 0.98 24 34 0.084 7.4 7.7 1.0 1 23 721 743 721 744 0.93 25 34 0.074 6.4 7.8 0.1 2 20 750 768 749 770 0.94 26 34 1.5 1.3e+02 3.8 2.0 1 23 1044 1066 1044 1066 0.95 27 34 0.0041 0.36 11.8 0.6 1 23 1082 1104 1082 1104 0.97 28 34 0.055 4.9 8.2 0.9 1 23 1110 1134 1110 1134 0.97 29 34 0.0018 0.16 12.9 0.3 1 23 1139 1161 1139 1161 0.97 30 34 0.021 1.8 9.6 1.5 1 23 1168 1190 1168 1190 0.98 31 34 5.7e-05 0.005 17.6 0.3 1 23 1196 1220 1196 1220 0.98 32 34 0.00068 0.059 14.3 3.9 1 23 1226 1248 1226 1248 0.99 33 34 0.021 1.9 9.6 2.3 2 23 1255 1277 1254 1277 0.96 34 34 0.0036 0.31 12.0 0.8 1 21 1283 1303 1283 1304 0.95
Sequence Information
- Coding Sequence
- ATGgatgtaaaaattgaaaatatagacTGCGAATTGAGAGATATGCaagaaaatactaataatgaaccAATATCTAATCAAACTGTCGAAGCTTACGATCCGTTGGATACTAACAATTGCCAGGATATAAAAATGGAAATGGAAAGTGATGATGACGGTTATGCTAATGATATATCTATCGACATtgatgatTATAAATCTTCGCCAAATTTAAAACTCAAACACAAATGCACAAAATGTTCAAAGAAATTCAGAAGAAAAGAATATCTCGTAAATCACATGGCCGTTCACACTAAAGGAAAGAAGTTTTCGTGCGACGTATGTGGAAAATCATACAAGACCAAATCAGTATACGAAAGTCACATAATGTTCCATAGCACTAAACAGTTCAATTGCGAATTTTGCGAACAAAAGTTCAGTTTTAGACGCGAACTCAAAAAGCATTTACATATGCACGACGATGAAGTGTGCAATTTGATCTGCAGCATATGCAATAAGCATTTCAAATACAACCAATTGTACACCGAACATATGGCGATGCATTTGAAAAAGTACGTTTGCGTCCATTGCTCGAAATGTTTTAAATCCGAGCATAAAATGAACATTCACATGTTCAAATATCATAATACTATAGAAATTAAATGTCCTAAATGTAAGGCTACGTTCGATGATAAACGATCGCTCAGGAGACACATGTTGGATCATAAAGAAGGAAAGTATAAATGTGACTATTGCGCGATTAGGTTCCTTCGTTCGCGTGATCTGAAAACGCATCTTATTTTACATAGTGACGAAATCAACTTCGAATGCGATAATTGTCGAAGGATTTACAAGACAAAACGATTATTATCGAAGCATATGGctgtacatatattgaaatatcagTGCGTTCATTGCTTGAAACGATTCAAATCTAAGTATAAGTTAGATATTCATGTTAGACGGCGGCATTCGGATCCGAATATAAATTGCTTCTTGTGCGatcaaatgtttaataatatacgaTCGCTCAATAGACACGTTATGCTGCATCATAAGGACGCGTACAAGTGTGAATTTTGTCTCAGGACCTTCATGACTAATCGCGATCTTCTCCGACATTTAGTCGTACATAACGACGTGTACGATTATAAATGCGACGTATGCGGAAGAGAGTTTAAACATAAGCAATCGATCTCAAAACATATGTTGCTTCACATAAAATATGGGAATTATAAATGCGAATTTTGCCCCAAAGCGTTTACGTTCAAGTATAACTACAATAATCATATCCGTCAGCACAGCGGCGAACCGTGCTTCAGATGTCACATTTGTAAAAACATGTTCTTCAACAAACGACTGCTTTTGATTCACATCATGGACGATCATAAAGAAGAACCGAAATTCGAATGCAAATTCTGTCGAAAGTTGTGCACCGCTTCTAATGAGCTTCGCCAACACGAGCTCACGCACAAAACTGAATTAGACTACAAATGCGAAATATGCGAAAAGCGATTCAAGCGGAAACGTTCGCTCTTACGACACGTCTCCGGATTTCACATGGGCCTTCCGCTTTACAAATGCATCTTATGCGAAACAATGTTCACCACTAGGCAACTATTAAGCTCACACCTCAAATTAGATCATAAAGACGAAAACAGACACGAGTGCGAATTCTGCCAAAAGATATTCCTGTCAAACAGCGAACTGATTCGACATCACATTGTCCACAGAGAACAATGCAATTACAAATGTGATATTTGCGGTAAAATGTTCAGGTACAAACACTCGATAACGAACCACATGTCGATACACATGATATTCGCCATACATACGTGCAATTTCTGCTCTAAATCGTTCCGACACAAACACAACTTGGACAACCACATTCGAGAATACCATTCCGAACCGATCGTTCGATGCCACTTGTGCGACAAAATGTTCGGCACGGCGAGACTGCTTCACACGCACATCATGATAGATCACGAAATGGAAAATAAGAACGGTATGAAGTACGAATGCAACTATTGCCAAAAGTTGTTCACTTGCAACAGTTTGCTTTTGCGGCATCTGGTGATGCACAGCGGCGCTTTGGAGTTTAAGTGCGGCGTGTGCGATAAAGGGTTCAAACGGCAGCATTCGCTAAAGCGCCATATGAGTTTGCACGATGTCAAAGAAGAATTTGCGTGTTCCCAGTGtccgaaaattttaaattctaaattttctcTAGACAATCACGCCGGCAAACATCACGGCATTCCGAGGACTTCGTGTTCCAAGTGTCAGGAAATATTTCAAACTACGAACGAGCTACGGGAACACATTGGTATTTTGCGCAATGGCAACACCGATGTCGCATTTTGCATAGAAATCGGTAAGGTTGGCAGCGTCCGCTGTCATCGCCGCAACACCGGTGACATGGAGGAGGATTTATTTATCTTGCTGAACTACGAAGTCGTCTGCCGATTGTGTATGCAAGGTCGCGGAGCTCTGTCGGACGTTTTTAACACCGACGAGGATCCTCCGTTGTCCCTGCAGATTCATGCCCTCACCGACATCGACATATCTATCAACGACGGCATGCCGAACAAGATATGCCACAAATGCAGATACATTGTGGAGTTGAGCTACGAGTTTCGCGCTATGGCTGTCAAAAACAACAAGTTGCTAGCTAACTATTTCGAAACGGACGTGCTGGCCAGCCAAGTTGCAGAATCGTTCAAGAAAAGCAACGCGAACCATGAATATTACAACGAGGATAGCCTACCGGACGATATTCAAGACAATATGGAGGTAATCGAAACCAGCGACATGCTAGACGAAGATGAAattaggatattaaaaaaaagtaacggAAAATCGGATTATAAAGAGAGCCTGATATCGGTGGAACCCGTAGTCGGTACGCATATGGATCTGTGCTCGGAAACCGGCGATCTCATAGTAGAGTGCAAAATGGAATCGCCGGAAATATTCGAAACGTCCGTAGATAAACACGATTATACGTCTAGTAAAGAAGTCGTTCTGAACCAAGTCAAATTTGAAGAATCTGATACGTCTCAAGTGCATTTATTGCCAGATATGTCCGACGAcgATGGCTTAAATCTGAGGCACAAGGACTCCGGCAATTTGGACCGATCTCACAGGCAGCACACGTGTCAGCTGTGCTTGGAGATTTTCAACGATCGAACCGCTCTCTTGTGCCACATTAACGAACACTACAAAAATACCACGCTCACGCCGTACACGTCCGCAACCAAACCTTTCATATGTTTAGAATGCAACGTCAATTTTACCGTCAAAATGGATTTGATCATACATCACCGAGAGCACTTCAATATCAATCCGTATGTGTGCAAAGTGACCGGTTGTAATTTTGACGTCGGGACGAGGgaGGCGCTAAGGCATCATATGTACAAACATGCACTGAAAAAGTATGTTTGCAATCTGTGCGGCGCTAGGTATAGACGCAAAGTTGAAATACTGCGCCACCGTGTACGCCACATGGACGAGGGTCGTCAGTTTCGCTGCGGCTTGTGTTGGGTCATATGCAAAAATAGGCTGAGCTTAAAAGCCCATCTTAAAAATCACGAAATTGGTAGAAGGTTCAAATGTAATTTTCCCGGCTGTCCGAAGGCGTTTTATTCCAATTCCGATTTAGTAATCCACAGTAGATCTCATTCCAATGATAAATGTTTCAAGTGCAATCTTTGCATTTGCGCATATACATCACAATCACAACtaaatagacacTTACGTCGCCATGAGAAACCAGGTCCGACTAAATGCGACAAGTGTTCGGAGATATTCGAAGACTACGGTTCGTTCTGTAACCATCGTATAACCACACACGGAGAATGGCAACCGCACAGATGTAAAGGATGTAATCAAGGttatcagAGTGAACAGCAATTAGAGAAGCACATGCTTCGTTGTCAAATTGCTCTAAAAATGAGAGAACTAGGAAGTGATAGCATTGATATCATAATAGAAGGCAAAGACGACGATAGCTTCATGGAAGATCAAAATGTAGAAGAAgacaaataa
- Protein Sequence
- MDVKIENIDCELRDMQENTNNEPISNQTVEAYDPLDTNNCQDIKMEMESDDDGYANDISIDIDDYKSSPNLKLKHKCTKCSKKFRRKEYLVNHMAVHTKGKKFSCDVCGKSYKTKSVYESHIMFHSTKQFNCEFCEQKFSFRRELKKHLHMHDDEVCNLICSICNKHFKYNQLYTEHMAMHLKKYVCVHCSKCFKSEHKMNIHMFKYHNTIEIKCPKCKATFDDKRSLRRHMLDHKEGKYKCDYCAIRFLRSRDLKTHLILHSDEINFECDNCRRIYKTKRLLSKHMAVHILKYQCVHCLKRFKSKYKLDIHVRRRHSDPNINCFLCDQMFNNIRSLNRHVMLHHKDAYKCEFCLRTFMTNRDLLRHLVVHNDVYDYKCDVCGREFKHKQSISKHMLLHIKYGNYKCEFCPKAFTFKYNYNNHIRQHSGEPCFRCHICKNMFFNKRLLLIHIMDDHKEEPKFECKFCRKLCTASNELRQHELTHKTELDYKCEICEKRFKRKRSLLRHVSGFHMGLPLYKCILCETMFTTRQLLSSHLKLDHKDENRHECEFCQKIFLSNSELIRHHIVHREQCNYKCDICGKMFRYKHSITNHMSIHMIFAIHTCNFCSKSFRHKHNLDNHIREYHSEPIVRCHLCDKMFGTARLLHTHIMIDHEMENKNGMKYECNYCQKLFTCNSLLLRHLVMHSGALEFKCGVCDKGFKRQHSLKRHMSLHDVKEEFACSQCPKILNSKFSLDNHAGKHHGIPRTSCSKCQEIFQTTNELREHIGILRNGNTDVAFCIEIGKVGSVRCHRRNTGDMEEDLFILLNYEVVCRLCMQGRGALSDVFNTDEDPPLSLQIHALTDIDISINDGMPNKICHKCRYIVELSYEFRAMAVKNNKLLANYFETDVLASQVAESFKKSNANHEYYNEDSLPDDIQDNMEVIETSDMLDEDEIRILKKSNGKSDYKESLISVEPVVGTHMDLCSETGDLIVECKMESPEIFETSVDKHDYTSSKEVVLNQVKFEESDTSQVHLLPDMSDDDGLNLRHKDSGNLDRSHRQHTCQLCLEIFNDRTALLCHINEHYKNTTLTPYTSATKPFICLECNVNFTVKMDLIIHHREHFNINPYVCKVTGCNFDVGTREALRHHMYKHALKKYVCNLCGARYRRKVEILRHRVRHMDEGRQFRCGLCWVICKNRLSLKAHLKNHEIGRRFKCNFPGCPKAFYSNSDLVIHSRSHSNDKCFKCNLCICAYTSQSQLNRHLRRHEKPGPTKCDKCSEIFEDYGSFCNHRITTHGEWQPHRCKGCNQGYQSEQQLEKHMLRCQIALKMRELGSDSIDIIIEGKDDDSFMEDQNVEEDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -