Basic Information

Insect: Plectrocnemia conspersa
Gene Symbol: -
Assembly: GCA_009617715.1
Location: VTFK01000410.1:84481-90991[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 4.7e-05 0.0041 17.9 1.8 1 23 18 40 18 40 0.99

2 20 3.9e-07 3.4e-05 24.4 1.1 1 23 46 68 46 68 0.98

3 20 1.6e-07 1.4e-05 25.6 3.3 1 23 74 96 74 96 0.98

4 20 0.0052 0.46 11.5 2.4 1 23 102 124 102 124 0.98

5 20 0.00048 0.042 14.7 1.2 1 23 144 166 144 166 0.97

6 20 5.3e-06 0.00047 20.9 1.8 1 23 172 194 172 194 0.98

7 20 0.00018 0.016 16.0 0.2 1 23 211 233 211 233 0.97

8 20 1.1e-07 9.8e-06 26.2 1.4 1 23 239 261 239 261 0.99

9 20 0.0012 0.1 13.5 2.7 1 23 267 289 267 289 0.99

10 20 6.6e-07 5.8e-05 23.7 1.1 3 23 297 317 295 317 0.98

11 20 6.9e-06 0.00061 20.5 5.5 1 23 323 345 323 345 0.99

12 20 1.7e-05 0.0015 19.3 0.2 2 23 501 522 500 522 0.97

13 20 0.0024 0.21 12.5 3.9 1 21 705 725 705 727 0.94

14 20 2.6e-06 0.00022 21.9 0.8 1 23 733 755 733 755 0.98

15 20 7.2e-07 6.3e-05 23.6 2.1 1 23 761 783 761 783 0.98

16 20 0.0012 0.1 13.5 2.1 1 23 789 811 789 811 0.98

17 20 5.3e-08 4.7e-06 27.2 3.3 1 23 817 839 817 839 0.99

18 20 3.6e-06 0.00032 21.4 1.0 1 23 845 867 845 867 0.99

19 20 0.0006 0.053 14.4 4.4 1 22 873 894 873 895 0.90

20 20 3.6e-06 0.00032 21.4 3.1 1 23 901 925 901 925 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	4.7e-05	0.0041	17.9	1.8	1	23	18	40	18	40	0.99
2	20	3.9e-07	3.4e-05	24.4	1.1	1	23	46	68	46	68	0.98
3	20	1.6e-07	1.4e-05	25.6	3.3	1	23	74	96	74	96	0.98
4	20	0.0052	0.46	11.5	2.4	1	23	102	124	102	124	0.98
5	20	0.00048	0.042	14.7	1.2	1	23	144	166	144	166	0.97
6	20	5.3e-06	0.00047	20.9	1.8	1	23	172	194	172	194	0.98
7	20	0.00018	0.016	16.0	0.2	1	23	211	233	211	233	0.97
8	20	1.1e-07	9.8e-06	26.2	1.4	1	23	239	261	239	261	0.99
9	20	0.0012	0.1	13.5	2.7	1	23	267	289	267	289	0.99
10	20	6.6e-07	5.8e-05	23.7	1.1	3	23	297	317	295	317	0.98
11	20	6.9e-06	0.00061	20.5	5.5	1	23	323	345	323	345	0.99
12	20	1.7e-05	0.0015	19.3	0.2	2	23	501	522	500	522	0.97
13	20	0.0024	0.21	12.5	3.9	1	21	705	725	705	727	0.94
14	20	2.6e-06	0.00022	21.9	0.8	1	23	733	755	733	755	0.98
15	20	7.2e-07	6.3e-05	23.6	2.1	1	23	761	783	761	783	0.98
16	20	0.0012	0.1	13.5	2.1	1	23	789	811	789	811	0.98
17	20	5.3e-08	4.7e-06	27.2	3.3	1	23	817	839	817	839	0.99
18	20	3.6e-06	0.00032	21.4	1.0	1	23	845	867	845	867	0.99
19	20	0.0006	0.053	14.4	4.4	1	22	873	894	873	895	0.90
20	20	3.6e-06	0.00032	21.4	3.1	1	23	901	925	901	925	0.94

Sequence Information

Coding Sequence: atgaaccgAGAAAAATCTGATATTGCATCACCTGAGAATGATGCAAAACCTTTCAAATGCGAATATTGCGCTAAGAGTTTCAAATGGAGCTATACTCTCAAGACTCATATTAGAATACACACGGGTGAAAAACCCTTTGAGTGTAAGATATGCGATAAGAAGTTCACCCAGTCGGGTCATTTGATCGAGCACGCCCGGATTCACACTGGAGAAAAGCCTTTCCAATGTCCGCACTGTGATAAATCATACGTAAACGCATCTCATTTGAAAATACATCTAAGGCAGCACACCGGAGAGAAACCTTACGTGTGTCGAATATGTTCTAAAAAATTTGGTCATCCAAACAGTTTGAAGTTTCATTTGAAAATACATACTGGAGAGTCTACGCTGCAATTTCCGTCTGTTAATTATCAACACATAATGAAGAAATACATTTGCGATATATGCGGcgctaattttaaattgagcCATTCCCTCAAAATGCATCTGTTTAGTCATTCCGGCGAAAAACCGTTCATCTGTGATTTATGTTCGAAAGcattcacGCAATTGAGTCATTTGAAAGAGCATTTATCTACTCACACCGGAGCAAAGAAACGTGTCAGTGCCAAAAAGGCGATATGCCGTCCTTATCGTTGCTCAGAATGTGGAGCGTTCTTCACTGGTCTCAGTGCTTTGAAGAGCCACGTAGGAAAACATAgtggtaAAAAGCCATATAAATGCGGTATTTGTGGAAGAGCTTTCACGTCTCAGTTCTTTCTGACGTCGCACATGAGAACGCACACTGGAGAAAAACCTTATCAATGCGAAGTGTGTTCAAGGCAGTTTTCGCAAAGATCAGTCCTCATTTGCCATTTGAGGACTCACACCGGCGATAAACGCTACGGATGCGATTTGTGCAATAAGAAGTTCATTAGTCGCTCAGATCTGACAAAACACATAAGAACTCACACTGGAGAAAAACCGTACAAATGTGAATTTTGCAACTCGAGTTTTAGCCGCAGCAGTCACCTGACACGACACAGAAAAATCCATTTTAGCAGTAAAAAGCGGAAGAAGAGCAGATCTAGAAAATTTACCAAGAGCAACATGACTTCGGAACTGAACGAAAAAGTGCTGTCAAACACAAATCTGATGACGGATCAGGACGGGTTGATCGAATTCGAAAACATCACGTCTTCCGTGGATAATGTGTTCATCGATAACGGAACCACGATAGACATGagcaatactaataatttattaccaaatcAAGAGTTTTGTCCTTTATCATTCCACAATGCTATCGATCATAGAAATAGTCTGCAATACACGTTCGAAGATTGCAATTATCAATACGAAGAATTCGGAGGTTTAGAAAAGTCAAACAGCAGCGATTCGATGAAGAAATTCGCTATTGTTAAAAACACGAGTAAATGGCTCAATCAGAATTCTAGTTGTCATCTGAAGAGTAGCTGCGAAGAAGTTAAACTTCAAGCTGATATTAACTGTAATCCGTGGCAATGCGGTATTTGCGATATGTCTTTCTCGGAACGATCGGATTTAACCAATCACGTTTATACACACAATTGCGATGGTTTAAGTTCTAAGTATACGAAATTAGTGAAGAATCCGCTATCGGGCATGTTGGAATTAAAAGAGATCGTTCCTAGGGAAAAGCCTAAGATTATACCGAAAGAAGAGTTGAAACCGGTGATTGAAAACTTTCTATTGAACAAAAAGAAAAAGGTGATTATCAACGAAGAGCAGTTCTTGAacgaaaatatgaaatatttggaATTGTTCGAGTCCAATCAAATCATGAGAGAAAATTGCGCGAAGAAGGAATTGCATAATATGATCGACCACATGAATGATGAAAATATGATTCATAATTACTCAGAAGATGATGTAAAAATCGATGAATTTTCTACTGACGATGAACagGTTTTAACtgctttaaattatgaaattgccGAAAAGCATGTTGATGAAATCCAAATCGAAATTATAAACAATCACTACATCGATTTGAAACCCAATAACGATCCAATTCCAGACAAAACAGACATCAATATATCAAAAACGAGTCAACCGGACATTGAACTATTGAACTTGAAGAGTGTAAAGAAGTACATTTGCGATAAATGCCCGAAAGCTTTTAaATTTTCTCATGCTTTGATGGTACATAAGCGATGCCACACTGGAGAGAAACCTTTTGTATGCAAAGTTTGCAATCAGACTTTCACCCAAAAAGGACAGTTGCTGCAGCATGAGCGCATACATTCCGGAGAAAAACCTCATCAGTGCTGGCAGTGTGGAGCATCTTTCTCAAATGCAGCACACCTCAACTCGCATATGAAGACGCACACGGGAGAAAAACCTTACGAATGCGAGATTTGCCATAAGCAGTTCGGGCACAGGATCGGATGGAAGCTACATCAGAACATCCACACTGGAGAGACGCCTTATAAATGCGAACATTGTGGAAGAGgtTTCCGTCAGCCGTCTTCGTTAAAGTCGCATCGTCGGACGCACACAGGAGAACGTCCCTTCCAATGCGACTTATGTCCGAACGCATTCAGGCAGAAGTCTACCCTCATATCACATCGTCGTACGCACACCGGCGAGAAACCTTTTGAGTGTGAAGTTTGCGAACATAGTTTCTCATCGAGGAGCGATTTGAAAAAGCACTGCGTCACACATTCGGAAGACAGGCCATTTATCTGCACACTGGATTCGTGCGGAAAGTCTTTCAATAGAAACTTTCACTTGAAGCGCCATATGGAGACTCACAAAACAGCGGATAAACGAGGAGGGTTAAATCAAGACGATCCATTATACACCACCTTAGTCGATTctaataatttgtattga
Protein Sequence: MNREKSDIASPENDAKPFKCEYCAKSFKWSYTLKTHIRIHTGEKPFECKICDKKFTQSGHLIEHARIHTGEKPFQCPHCDKSYVNASHLKIHLRQHTGEKPYVCRICSKKFGHPNSLKFHLKIHTGESTLQFPSVNYQHIMKKYICDICGANFKLSHSLKMHLFSHSGEKPFICDLCSKAFTQLSHLKEHLSTHTGAKKRVSAKKAICRPYRCSECGAFFTGLSALKSHVGKHSGKKPYKCGICGRAFTSQFFLTSHMRTHTGEKPYQCEVCSRQFSQRSVLICHLRTHTGDKRYGCDLCNKKFISRSDLTKHIRTHTGEKPYKCEFCNSSFSRSSHLTRHRKIHFSSKKRKKSRSRKFTKSNMTSELNEKVLSNTNLMTDQDGLIEFENITSSVDNVFIDNGTTIDMSNTNNLLPNQEFCPLSFHNAIDHRNSLQYTFEDCNYQYEEFGGLEKSNSSDSMKKFAIVKNTSKWLNQNSSCHLKSSCEEVKLQADINCNPWQCGICDMSFSERSDLTNHVYTHNCDGLSSKYTKLVKNPLSGMLELKEIVPREKPKIIPKEELKPVIENFLLNKKKKVIINEEQFLNENMKYLELFESNQIMRENCAKKELHNMIDHMNDENMIHNYSEDDVKIDEFSTDDEQVLTALNYEIAEKHVDEIQIEIINNHYIDLKPNNDPIPDKTDINISKTSQPDIELLNLKSVKKYICDKCPKAFKFSHALMVHKRCHTGEKPFVCKVCNQTFTQKGQLLQHERIHSGEKPHQCWQCGASFSNAAHLNSHMKTHTGEKPYECEICHKQFGHRIGWKLHQNIHTGETPYKCEHCGRGFRQPSSLKSHRRTHTGERPFQCDLCPNAFRQKSTLISHRRTHTGEKPFECEVCEHSFSSRSDLKKHCVTHSEDRPFICTLDSCGKSFNRNFHLKRHMETHKTADKRGGLNQDDPLYTTLVDSNNLY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -