Pcon000080.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Plectrocnemia conspersa
Gene Symbol
-
Assembly
GCA_009617715.1
Location
VTFK01000254.1:718601-731174[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 4.5e-05 0.0039 18.0 2.4 1 23 223 245 223 245 0.97
2 20 7.3e-05 0.0064 17.3 1.2 1 20 251 270 251 273 0.94
3 20 7.4e-05 0.0065 17.3 1.4 1 23 279 301 279 301 0.98
4 20 4.2e-05 0.0037 18.1 4.4 1 23 307 329 307 329 0.98
5 20 4.1e-05 0.0036 18.1 4.7 1 23 335 357 335 357 0.99
6 20 1.7e-05 0.0015 19.3 4.8 1 23 363 385 363 385 0.97
7 20 2.6e-06 0.00022 21.9 6.5 1 23 391 413 391 413 0.97
8 20 1.2e-06 0.00011 22.9 3.7 1 23 419 441 419 441 0.98
9 20 6.3e-05 0.0055 17.5 6.7 1 23 447 469 447 469 0.97
10 20 2.6e-05 0.0023 18.7 5.3 1 23 475 497 475 497 0.97
11 20 3.8e-07 3.3e-05 24.5 3.0 1 23 503 525 503 525 0.98
12 20 5.3e-06 0.00047 20.9 7.7 1 23 531 553 531 553 0.98
13 20 4.4e-06 0.00039 21.1 7.0 1 23 559 581 559 581 0.98
14 20 3.6e-08 3.1e-06 27.7 3.6 1 23 587 609 587 609 0.99
15 20 6.1e-07 5.3e-05 23.8 5.5 1 23 615 637 615 637 0.98
16 20 2.4e-07 2.1e-05 25.1 2.9 1 23 643 665 643 665 0.98
17 20 1.5e-05 0.0013 19.5 7.7 1 23 671 693 671 693 0.98
18 20 2e-05 0.0017 19.1 5.9 1 23 699 722 699 722 0.95
19 20 0.00014 0.012 16.4 1.3 1 23 728 750 728 750 0.97
20 20 1.5e-07 1.3e-05 25.8 2.8 1 23 771 793 771 793 0.97

Sequence Information

Coding Sequence
ATGGACGAGGAACACCCTGGGCCTGCGCCCTCGCGCGCCGCGGAGCCGCAGCCCGACACCCCCCCATGCGCCCCTGTCGACCCCGCGGCCGGCGTCGCCAAGTACTGGGTCTTCGCCAACCTCTTTCCCGGTCCGCAGGTTTCAGTCTACAACCTGCCCCGCGCAGATGGAAAGCCCCCTCAGGCTGAACAGGAACAGCAAATCCTCCAGCAGACTTCTGACCGCAGGAACGATCAGATTCACTTGACGGTCACCGAAGATGGCATGCTGCAGGTCGTTCACCCGCAGCCCGGCAAAGACCCTCACCAAATCGGCGAGGTGCAGACGCTCACCGTCGAGCAACTGCAGCAGATCGTCGACCAACAAGCGTTGCGGATCGAGCGGGCGCCCGACGGCAAAGCGCCCACTCACTTCTACGCACCGGAACCAGAAGAGGCACCGGTCGCCGTCGAGCCGAATGCCGCCCCCGGAGAGCAGGACCTCCAGGGCATGTGCAAAGTCAACGCCGAGGACCTGTCGCAGTTCCTCGCGTACCACGAAGTCTTCGGAAAGCTCGGGAGCGAGGCCGTCGTCCGCAAGGCCACCTCTGAGTCCGAAGCCGAAGCCGCGGCGAGCAACGCTTCCGAGGCCGACGGCAGCCCACAGTCCGCCGGATCGGCCGGCCCGCACCCCTGCGAATTGTGCGGCAAGACGTTCCAGTTCCGCTACCAGTTGATTGTGCACagGAGGTATCACGCAGAAAGGAAGCCGTTCACGTGCCAGGTGTGCGGGCAGGCGTTCGCGTCTTCGGACGAGCTAACGAGGCACGGCAAGTGCCACCTCGGAGGGTCCATGTTCACCTGCACCGTCTGCTTTCACGTGTTCGCCAACGCGCCCAGTCTGGACCGGCACATGAAGCGCCACTCGCAGGACAAACCGTACTGCTGCCCTGCGTGCCAGAAATCTTTCGCCCGCAAGGAGCACCTGGACACGCACCAGCGCAGTCACACGGGGGAGACGCCCTACCGGTGCGGCTTCTGCTCGAAGACCTTCACGCGCAAAGAGCACATGGTGAACCACGTGAGGAAGCACACCGGCGAGACGCCCCACCGCTGCGACATCTGCAAGAAGTCCTTCACGCGGAAGGAGCATTTCATAAACCACGTCATGTGGCACACGGGCGAGACGCCACACCACTGCGAGATATGCGGCAAGAAGTACACTCGCAAGGAGCACCTGGCCAACCATATGCGCTCGCACAACAACGACACGCCGTTCCGCTGCGAGATCTGCACCAAATCCTTCACCAGGAAGGAGCACTTCACCAATCACATCATGTGGCACACGGGCGAAACGCCCCACCGCTGCGACTTTTGTTCCAAGACGTTCACGCGCAAAGAGCACCTGCTGAACCATGTGAGACAGCACACGGGCGAATCCCCGCACCGCTGCGCCTACTGCTCCAAGTCGTTCACGAGGCGCGAACACCTGGTGAATCACGTACGGCAGCACACGGGCGAGACTCCCTTCCGCTGCACGTATTGCCCCAAAGCATTCACTAGAAAGGACCACCTCGTTAACCACGTCAGGCAGCACACCGGCGAATCGCCGCACAAGTGCACTTACTGCTCCAAGTCGTTCACGCGCAAGGAGCACCTCACCAACCACGTGAGGCAGCACACGGGCGAGTCGCCGCACCGCTGCGGCTACTGCTCCAAGTCCTTCACCAGGAAGGAGCACCTCACCAACCACGTCAGGAAACACACCGGGGAGACGCCGTACACCTGCAGCTATTGCCCCAAGGCGTTCAGTAGGAAGGAACACCTGACCAACCACATCAGGAAACACACCGGCGAGACCCCGTACAGCTGCTCCTACTGTACCAAATCTTTCAGCAGAAAGGAACACCTGAACAACCACGTGAGGAAGCACACGGGAGAGTCCCCGTACGTCTGCACCTACTGCACCAAGGCGTTCACCAGGAAGGAGCACCTCAACAACCACGTCAGGATACACACGGGCGAGTCTCCGCACCGCTGCGAATTCTGCCAGAAGACCTTCACCAGGAAGGAGCACTTGACCAACCATCTGCGTCAGCACACGGGGGACACGCCTCACTGCTGCAACGTGTGCAACAAGCCCTTCACCAGAAAGGAGCACCTCATCAACCACATGGCGAGATCGCACACGGGCGAGCGGCCTTTCGCGTGTGACGAGTGCGGCAAATGCTTTCCTCTCAAAGGCAATCTGCTGTTCCATCAGCGGTCGCATAACAAAGGTCAAAATCCAACGGCAGCCGCTAAGCGATCTCAGACAGGGGAGAAAGCGACACACTCTTGCGAGCAGTGCGGCAAGACTTTCGGCGATAAAAACAATCTGCAGCGCCACATACGCAAGCACGACGCGGAGGACGGCGCCGCAGCGGTCGACATTGCGGAAGCGGAAGTCGCATCCGTTCCCGTCGAGCAGCATAGCCCGACACTCGTGCATATGGCCGGACAGGTCATCGCAGAGAGTGCGCCAGGACAGAGAACGGCCACCCTGCTTCACCAGGGACAGCAGCCGTCGATGCCGCACCACGGTGTGGTCGTCAACTATTGA
Protein Sequence
MDEEHPGPAPSRAAEPQPDTPPCAPVDPAAGVAKYWVFANLFPGPQVSVYNLPRADGKPPQAEQEQQILQQTSDRRNDQIHLTVTEDGMLQVVHPQPGKDPHQIGEVQTLTVEQLQQIVDQQALRIERAPDGKAPTHFYAPEPEEAPVAVEPNAAPGEQDLQGMCKVNAEDLSQFLAYHEVFGKLGSEAVVRKATSESEAEAAASNASEADGSPQSAGSAGPHPCELCGKTFQFRYQLIVHRRYHAERKPFTCQVCGQAFASSDELTRHGKCHLGGSMFTCTVCFHVFANAPSLDRHMKRHSQDKPYCCPACQKSFARKEHLDTHQRSHTGETPYRCGFCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFINHVMWHTGETPHHCEICGKKYTRKEHLANHMRSHNNDTPFRCEICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCAYCSKSFTRREHLVNHVRQHTGETPFRCTYCPKAFTRKDHLVNHVRQHTGESPHKCTYCSKSFTRKEHLTNHVRQHTGESPHRCGYCSKSFTRKEHLTNHVRKHTGETPYTCSYCPKAFSRKEHLTNHIRKHTGETPYSCSYCTKSFSRKEHLNNHVRKHTGESPYVCTYCTKAFTRKEHLNNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGDTPHCCNVCNKPFTRKEHLINHMARSHTGERPFACDECGKCFPLKGNLLFHQRSHNKGQNPTAAAKRSQTGEKATHSCEQCGKTFGDKNNLQRHIRKHDAEDGAAAVDIAEAEVASVPVEQHSPTLVHMAGQVIAESAPGQRTATLLHQGQQPSMPHHGVVVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-