Pcon020865.1
Basic Information
- Insect
- Plectrocnemia conspersa
- Gene Symbol
- -
- Assembly
- GCA_009617715.1
- Location
- VTFK01000426.1:108981-110281[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8e-09 1.6e-05 24.9 0.1 2 39 10 47 9 52 0.92 2 2 5.4 1.1e+04 -3.3 0.0 27 39 205 218 205 221 0.74
Sequence Information
- Coding Sequence
- ATGCCTCCCAAACGAGCATTGTGGTCTGAAAATGACTTGGTGTCGGCTGTTCGAGCGGTAGAAAGAGGAATACTGAGTACCTATAAAGCTGCTGAGAGGTATAAAGTACCCAGAAGAACCGTTAGAAATCATCTTCAGACCggcagtttaaaaaaaacactaggtcGAAAATCCATACTCAGTGACGACCAGGAAACTGAACTTTTCAACCCATCTCATAAAGTTGCTGGTAAAGATTGGTTTAATGCATTCATGAAAAGACATCCAGAAATATCTAGAAGAAAAAAAGCTCAATTCATAAACCCTGCCAGAGCtcaaaagcttaataaatttattgttgatgATCACTTCAAGCGACTGAGTGAAGTTTATGATAATTTGGACTTGAAAAGTCATCCTGAAAGAATTTACAATATGGATGAGAAAGGTTGCCGTCTAACGATCCATCATCAGCAAACTGTTTTAGCAAAGAAAGGAGCTAAAAGAGTGCACTTACAGTCTTCAGAACACGCTGAAAGTGTCACAATCGCCGGATGTATAAATGCACTTGGCATTGCAATACCACCAATGATCATTTTCAAAGGTAAACGACTGAAACCAGAGTTATATGACAACATTCCACCGGGAACATTAGTTCAAAAATCTACAAAGGGTTATATGACCAATGAACTTTTCAAGGATTTCTTGAAACACTTAGCCCGGTACAAAAGTACAGGAAAGtgccttttaatatttgatggaGCAGCCTGTCACCTAGACCTATCCATAGTTGAAGTTGCCGATTCACTCGATATATCATTATACTGTTTACCATCAAACACCACTCATGAACTCCAACCGCTTGATAAAGCCGTCTTTCGATCATTTGAGCACCATTGGGATGCTGAAGTTATAACATTTATGGAACAAAACCCAGATAAAAAACTCACTAAGgcaagatttaatattattctctcAAATGTGTGGTCGAAATCTATGACCCATAATAACATTATAAGCGGCTTCAGGGCAACTGGTTTGTATCCATTGAATCCACAGGCTATTCCAGAAACAGCTTTTGCACCATCTTTACTGACAGAGGCACCAGCTCCTCCTGTATCTGACGATgttaacaaagaaaaaattcGCCATATCTCGTCTACCCTAGGCCACCAACATCGGGACCATCAACATCAAGAATTGAAGAAGAATTAA
- Protein Sequence
- MPPKRALWSENDLVSAVRAVERGILSTYKAAERYKVPRRTVRNHLQTGSLKKTLGRKSILSDDQETELFNPSHKVAGKDWFNAFMKRHPEISRRKKAQFINPARAQKLNKFIVDDHFKRLSEVYDNLDLKSHPERIYNMDEKGCRLTIHHQQTVLAKKGAKRVHLQSSEHAESVTIAGCINALGIAIPPMIIFKGKRLKPELYDNIPPGTLVQKSTKGYMTNELFKDFLKHLARYKSTGKCLLIFDGAACHLDLSIVEVADSLDISLYCLPSNTTHELQPLDKAVFRSFEHHWDAEVITFMEQNPDKKLTKARFNIILSNVWSKSMTHNNIISGFRATGLYPLNPQAIPETAFAPSLLTEAPAPPVSDDVNKEKIRHISSTLGHQHRDHQHQELKKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -