Pcon011416.1
Basic Information
- Insect
- Plectrocnemia conspersa
- Gene Symbol
- bab1
- Assembly
- GCA_009617715.1
- Location
- VTFK01000229.1:350914-357527[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.1e-18 1e-14 54.3 0.0 1 43 28 71 28 73 0.95 2 2 5 1e+04 -3.2 0.9 6 15 156 165 152 167 0.77
Sequence Information
- Coding Sequence
- ATGTGGCAAAAGTGCTGGAACACCAACCAATCGTTGGTGCACAATTTGCGCTTCAGGGAGCGCGGTCCGCTCAAGTCTTGGCGCCCGGAAACCATGGCCGAAGCCATATTCTCCGTGCTGAAGGAGGGCCTGTCTCTATCTCAGGCGGCTAGGAAGTACGACATTCCCTATCCGACGTTTGTGCTGTACGCCAACCGAGTGCACAACATGCTGGGACCGAGCGCCGACTGCTCGACTGAACTTCGACCCAAAGGTCGTGGCCGTCCCCAACGCATCTTGCTGGGAGTTTGGCCAAACGAGCATATTTGCGCTGTCATCCGCGCAGTCGTATTTAGGGACTCAAATGACTCCCACCACATCAAGGAAGAGCCTCTGCCCAACTATCCAGCTTTGaccGATGGAAATATGAACATGCCGGCTTGTAGTAACGGCACTGAGGGAACAATGTCACCGGAAACAGCCGCAGCAGCAGCAATGGCCGCAGTAGCCCAAGGACTAAGACAGCAGATGTGCAACATGGTTGCCGCCGCTCATCATGCTCCTCCGCAAGTAGCTCTCTCGCCATGCCTCGGATCTCCTCCGCAACCGCCGCCGGCTCCTCTCGCTTTGGACCCTCAACTGCATCTGCCCCTGCCTGGCAATGGCACCGAACACTTCCGCCCGTTCGTTCAACCCCATCAAGATTTGTATTTCAGGGAAGAGCTCGATGCGCTCACCAGGAGCCCCGGAGTTTCTCCGCCTCGCATACCGCTCAACGAACCCGAGTCCATGTCCGTCAAACTCGAGCCGTTCGGAGGTCCCAGAATGTAA
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADCSTELRPKGRGRPQRILLGVWPNEHICAVIRAVVFRDSNDSHHIKEEPLPNYPALTDGNMNMPACSNGTEGTMSPETAAAAAMAAVAQGLRQQMCNMVAAAHHAPPQVALSPCLGSPPQPPPAPLALDPQLHLPLPGNGTEHFRPFVQPHQDLYFREELDALTRSPGVSPPRIPLNEPESMSVKLEPFGGPRM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -