Pcon009475.1
Basic Information
- Insect
- Plectrocnemia conspersa
- Gene Symbol
- -
- Assembly
- GCA_009617715.1
- Location
- VTFK01000030.1:516485-518652[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8e-11 1.6e-07 31.3 0.0 4 39 192 228 190 232 0.90 2 4 9.4e-12 1.9e-08 34.3 0.1 2 39 244 281 243 284 0.93 3 4 7.5e-16 1.5e-12 47.4 0.0 2 45 299 343 298 343 0.97 4 4 1.2e-18 2.4e-15 56.4 0.0 1 42 350 392 350 394 0.95
Sequence Information
- Coding Sequence
- ATGTTCCATTATTTCCGCGAGGGCCCGCGCCGGCGCCTCCCCGCCCCGGGGGTCGGCGGCCCCTGCGCTTTCACTCTCGCGACGGCGCGCGCCGGAAGGTGCTGGAGATGGCCGCGGTGGCGGGATGACGGTCACGGAGGCCGCGGAGCGCGCGGAGCTCGCCATGCACACGCTGGCTCCCCGCGCGCCCCCCGACCGCCGACTCCGCCGCTGCTGCACCGGCTGCAGTCCTGCTCGACCCGCTCCTCCTGCGAGCTGCGGTCCCCAGGCCGTGGAGGCGGACTACCCCTGGCGGATCCGGCGGCGCCGGCGGCCACCCCGGTGCGCGACGATGACGGCTTTCGTCAGGTGCTCGAGCCTCGAGACGACGACGTCGCGATCGCTTCGGACCTGCTCCGGCTGATTCCGGGCGAGCCGATCGACGACGGCTTTCCCCCGTCGTCGTTCCTCTCGGTGTCGCTGTGTCTCTCCCAGGAGATCCGCCAGGACGAAGTCGCCGACGCGGAGCCGCCGGACGGGTTCCGACCCGCGCAGGGTCAGCCCGTCGCCGGACCTAAGACCTGGTCTCAGCGCGACATGGAGAGCGCGCTCGACGCGCTGCGCAACCACGACATGAGTCTCACCAAGGCTTCGGCCGCCTTTGGCATCCCCTCGACGACGCTGTGGCAGCGCGCGCACCGTCTCGGCATCGATACGCCCAAAAAGGAGGGACCTTCCAAGTCGTGGAGCGAGGGCAACCTGCACGACGCGCTGAGAGCCCTGCGCACGGGCACCATCTCGGCCAACAAGGCCAGCAAAGCTTACGGCATCCCGAGTAGCACGCTATATAAAATTGCTAGAAGAGAGGGCATACGATTAGCGGCGCCGTTCAACGCCGCTCCGACCGCCTGGAGGCCGGGCGATTTGGAGCGAGCTTTGCAGTCCATCCGCTCCGGCCACTCTTCGGTGCAGAGGGCCTCCACCGAGTTCGGCATCCCCACGGGTACTCTCTACGGCCGATGTAAGCGCGAGGGCATCGAGCTGTCGCGCTCTAATCCGACGCCTTGGTCCGAGGACGCGATGGGCGAGGCGCTCGAAGCAGTCAGGGTCGGTCAGATGTCGATCAACCAGGCGGCGATCCACTACAACCTGCCCTATTCGTCTCTGTACGGTCGATTTAAGCGGTGCAAGTACGAGAACGAGGCGCAGGCGAGGCCCCCGCCCGACTATCGCCGACAGGAGGCGCCCGACCCCTCCGGCCGCGGCTGCGTCCCCATCAGTTAG
- Protein Sequence
- MFHYFREGPRRRLPAPGVGGPCAFTLATARAGRCWRWPRWRDDGHGGRGARGARHAHAGSPRAPRPPTPPLLHRLQSCSTRSSCELRSPGRGGGLPLADPAAPAATPVRDDDGFRQVLEPRDDDVAIASDLLRLIPGEPIDDGFPPSSFLSVSLCLSQEIRQDEVADAEPPDGFRPAQGQPVAGPKTWSQRDMESALDALRNHDMSLTKASAAFGIPSTTLWQRAHRLGIDTPKKEGPSKSWSEGNLHDALRALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRPGDLERALQSIRSGHSSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYENEAQARPPPDYRRQEAPDPSGRGCVPIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -