Parg018697.1
Basic Information
- Insect
- Plebejus argus
- Gene Symbol
- -
- Assembly
- GCA_905404155.1
- Location
- FR989928.1:858578-863408[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.19 14 6.8 0.1 3 23 103 123 101 123 0.96 2 14 0.0061 0.46 11.5 3.1 1 23 229 251 229 251 0.99 3 14 0.00013 0.01 16.7 0.5 1 23 257 280 257 280 0.96 4 14 0.29 22 6.2 6.1 1 23 285 308 285 308 0.91 5 14 3.2e-06 0.00024 21.8 0.8 2 23 481 502 480 502 0.97 6 14 5e-05 0.0038 18.0 2.0 1 23 508 530 508 530 0.98 7 14 1.2 89 4.3 6.2 1 21 583 603 583 605 0.93 8 14 0.0033 0.25 12.3 0.9 1 23 640 662 640 662 0.96 9 14 1.8e-05 0.0014 19.4 0.1 1 23 668 690 668 690 0.97 10 14 0.0079 0.6 11.1 4.8 1 23 699 721 699 721 0.99 11 14 0.00012 0.0089 16.8 0.6 2 23 765 786 765 786 0.97 12 14 0.0067 0.5 11.3 5.2 1 23 805 827 805 827 0.96 13 14 2.3e-06 0.00018 22.2 0.7 1 23 833 855 833 855 0.98 14 14 5.6e-05 0.0042 17.9 5.2 1 23 861 884 861 884 0.98
Sequence Information
- Coding Sequence
- ATGATGGGTGAAGATTTTGATCCATTAAGCTACGGCTGTGCTGTTTATAATCAATTTATGAGCTGCCAAGATTTGGCAAGCTCTATTCCAATCGATCAGCATCTCACAAATGGCGGACAACTGGATCAAAATGTTTTTAAGACTTATGAAAATACAACCCAACCACACTTAGCAGAAACACTCGCAAACTATAGTAATAATGTGGACGTAAAACCTGATATATCCACCACGAGCAGAAAGAAAAAAAATGGTCGACTTAAAAATATGTCTGTGAAAATATCACAGCCAGATTTCAAATTTTACGGCTGCTCCCTGTGTAACATCTGCTACCCCACGCTGCCCGAGCTGGACGTGCATGTGGCCTCGCACAACGATCGCATCACTAGCTACGATCTGAGGATAAAAAATCAAATCAAAAAGAGGAAATTAAAAAAAGAAACAAAAAAACTTAAAAAATTAAAAGATATTGTAAAGAAAGAAAATGAACTCTTGGACATAGAGATTAAGCCCGAGGATGGTTACATTGGGACAGAGAAAGTGAATGAAATTAATTATTCCAAAGAGAAAGAACCCACGGAAGAGAGGGATGTCACTAACGGCCAGAATGATCCAAATGAACTAAATGCTAGTGATCCAAATGAGCTGATTGCTAAGAAGCAGGAGCTGCTCAATTTACAGAAAATATACAAATGTTTTGCGTGTTTCAAACAATTCTCTCTTAGCTACTACCTAAAACTTCATGTTAGATCTCACACAGATGAGAAACCTTACGTATGTGCGCAGTGTGGGCAGTCGTTTATCACGGCGAGCAAACTCGGTCGACATAACAAGAGGTACCACCTGGCCATAAAGTATCAATGTAGGATATGCTACAAATTATTCTGTAGATTTGAATTCTTGACAAGGCATTTTGACAACAAACATGCTGAACACAAATTAGAAGGAGAGCCTTATGACTACAATGCTATATTGCCGTACCTTAAAGAATTAGAGGAGCAATTAAGAGAAAAAGAGGAGGAAAGAGAAAAAAATAAGATAAAAACTACGGACGCCTGGGGAGATCTGTGGCCTATGGAGACTCCCGAGACCCAGGAGGTTAAAGAAGAACAAATGAAGGAAATAGAAGTTCCCATCAAAGAGGAAGTGTTCAACCCCGAGCCGATCACTATAGAAGAAGTTAAAGTTGATCCTATCGATTCCATTGAGATAAAATTAGAGCTCGAGGAAACTCCCAGGGAGATGGAGGACTGCCACAGTTATGATGATGATGACAATGTAGAGGAGGATAACAAGCGTGATGTGAAGACAGAGATGGCGAAAGTTGAAGATAATGATGAGGACGTCAAGAATGAGGCGACATCAGATGAAGACTACTTCCCGACTAACACGTGGGTGTCGAGCCCCAAGGACGAGCTGCTAGTGAAGGGCAAGGGCAAGCTGGAGTGCCCCGTGTGCCACAAGACCGTCAGCTCCGCGTCGTACATGCGCGTGCACATGCGCACACACTCCGGCGAGCGGCCATACCGCTGCCCGCACTGCGACCTCGCCTTCATCACCGCCAGCAAGATGCACCGCCACGCACTCACGCATCCCGAAACCTGGGAAGACAATGTTAAACCAGAGGTAAAAACAGAGACGGAAGATGGAGAAACCGACAAAAAAGGAAAAATGAAGAATGGTATGGCAGATTTTCTAAAGAAGACCAAAGGTGGGGAGAAAAAGAAGAATGGTTACCAGAAGCGGCCGTTCTCGTGCGAGTTCTGTCAGAAGAGGTTCCTGCACCAGGCCACTCTACAGGTCCACAAGAAGTGTCATGAGGGCGAGCCGCTGGTGTACAAGTGCACGTTCTGCCTGGCCGAGCAGCCGGACGAGGCGGCGCTGCGGGAGCACGAGGCCGCGCATGCCGGCCCCAAGCCCTACCTGTGCACCGTCTGCGGCCGCACCTACGCCAAGCGCGAGACCATGGTCTACCACCGCAAGTCGCACGCCGAGCACGCGCCCTACATCTGCGACGTGTGCACCAAGGGCTTCTCGTCCGCCGGCAAGCTGGAGCGGCACCTGGCCAGCCACCGCGCCGCGCGGTTCGTGCTGCGCTACGAGTGCCCCGTGTGCGCGCACATGTTCCACACGCGCTACCACGTGCAGCTCCACCTCAACACGCACCAGCGCGAGGGGCTCATCCGCGAGCAGGACCGGCCGCACGTGCTCGCCATGGTGCTGCAGAACGCGCGCCGCCTGCCGCGCGCCGGCGCCGCCGACCAGCCGCCTGCGCCGCCCGACGAGCGCAGCCGCGTGTGCAACATCTGCGGCGAGGTGTTCCAGCACTTCTATTACCTGGAGGAGCACCTCAAGTCACACGGCGCGCGCATCGCCGTCGCCGACGCCGCGCCCGAGCCGCCCGACGACCGCAAGCACGTGTGCCCCGTCTGCAGCAAGAGCTTCAAGCTGCACTACTACCTCAAGCTGCACAGCTTCACGCACACCAAGGAGAAGCCGTTCATCTGCCAGCAGTGCGGCAAGGGGTTCATCACGCGCGGCAAGCTCAAGCGGCACCTGGAGACGCACTCGGGCCTCAAGAAGTACCAGTGCCACATCTGCTGCAAGTTCTTCACGCGGCCGAGCTACCTGCGCATCCACGTGCGCACCATCCACGGCACGCAGGACTATAACTTCCGCCTCGCCGCGCCCCGCCCCCCGCTCGATGAGTACCCGCCCCCCGACCACCCCGCCCACCCCGTGCCGCCCCCCTGCTAG
- Protein Sequence
- MMGEDFDPLSYGCAVYNQFMSCQDLASSIPIDQHLTNGGQLDQNVFKTYENTTQPHLAETLANYSNNVDVKPDISTTSRKKKNGRLKNMSVKISQPDFKFYGCSLCNICYPTLPELDVHVASHNDRITSYDLRIKNQIKKRKLKKETKKLKKLKDIVKKENELLDIEIKPEDGYIGTEKVNEINYSKEKEPTEERDVTNGQNDPNELNASDPNELIAKKQELLNLQKIYKCFACFKQFSLSYYLKLHVRSHTDEKPYVCAQCGQSFITASKLGRHNKRYHLAIKYQCRICYKLFCRFEFLTRHFDNKHAEHKLEGEPYDYNAILPYLKELEEQLREKEEEREKNKIKTTDAWGDLWPMETPETQEVKEEQMKEIEVPIKEEVFNPEPITIEEVKVDPIDSIEIKLELEETPREMEDCHSYDDDDNVEEDNKRDVKTEMAKVEDNDEDVKNEATSDEDYFPTNTWVSSPKDELLVKGKGKLECPVCHKTVSSASYMRVHMRTHSGERPYRCPHCDLAFITASKMHRHALTHPETWEDNVKPEVKTETEDGETDKKGKMKNGMADFLKKTKGGEKKKNGYQKRPFSCEFCQKRFLHQATLQVHKKCHEGEPLVYKCTFCLAEQPDEAALREHEAAHAGPKPYLCTVCGRTYAKRETMVYHRKSHAEHAPYICDVCTKGFSSAGKLERHLASHRAARFVLRYECPVCAHMFHTRYHVQLHLNTHQREGLIREQDRPHVLAMVLQNARRLPRAGAADQPPAPPDERSRVCNICGEVFQHFYYLEEHLKSHGARIAVADAAPEPPDDRKHVCPVCSKSFKLHYYLKLHSFTHTKEKPFICQQCGKGFITRGKLKRHLETHSGLKKYQCHICCKFFTRPSYLRIHVRTIHGTQDYNFRLAAPRPPLDEYPPPDHPAHPVPPPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01178882;
- 90% Identity
- iTF_01248429;
- 80% Identity
- -