Parg018957.1
Basic Information
- Insect
- Plebejus argus
- Gene Symbol
- -
- Assembly
- GCA_905404155.1
- Location
- FR989928.1:3388260-3391370[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0085 0.64 11.0 0.4 1 23 14 37 14 37 0.90 2 23 0.6 45 5.2 0.4 2 23 65 87 64 87 0.95 3 23 0.68 51 5.0 0.2 1 23 109 132 109 132 0.90 4 23 0.099 7.5 7.6 0.9 3 20 139 156 137 158 0.80 5 23 0.0065 0.49 11.4 1.7 1 23 166 189 166 189 0.92 6 23 1.5e-05 0.0011 19.6 0.1 2 23 195 217 194 217 0.94 7 23 0.0032 0.24 12.3 0.1 2 23 222 244 222 244 0.94 8 23 0.0025 0.19 12.7 2.4 1 23 286 308 286 308 0.98 9 23 0.31 23 6.1 0.1 2 23 336 358 335 358 0.90 10 23 0.0059 0.44 11.5 2.7 2 23 379 401 379 401 0.97 11 23 0.0073 0.55 11.2 0.7 1 23 406 429 406 429 0.97 12 23 0.002 0.15 13.0 2.1 1 23 434 457 434 457 0.96 13 23 0.0073 0.55 11.2 1.0 3 23 461 482 460 482 0.95 14 23 0.019 1.4 9.9 2.3 3 20 493 510 492 512 0.94 15 23 0.015 1.1 10.2 2.5 1 23 569 592 569 592 0.95 16 23 2.5 1.9e+02 3.2 0.0 2 23 619 641 618 641 0.92 17 23 0.00093 0.07 14.0 0.2 2 23 664 686 663 686 0.95 18 23 1.2e-05 0.00093 19.9 1.9 3 23 693 714 691 714 0.90 19 23 0.0013 0.099 13.6 2.4 2 23 719 741 718 741 0.93 20 23 0.002 0.15 13.0 1.7 2 23 747 769 746 769 0.94 21 23 4.1e-05 0.0031 18.3 4.6 1 23 773 796 773 796 0.97 22 23 0.0044 0.33 11.9 1.4 2 23 803 824 802 824 0.95 23 23 9.4e-05 0.0071 17.2 1.8 1 23 830 852 830 852 0.98
Sequence Information
- Coding Sequence
- ATGTCTACGATTATCCCTTTTAAATATTTTACTAATAGATTTAAGTGCTTCTACTGTGGCAAACAATTTAACGAAGGTCTGGATTTAAGAGAACATACGGTCATCGAACATCCAGTTTGTGATGAGAATCATAAATGTATGTCGTTGCGAGGAAGGCTGGAACGCCCTCTCAAAATCGATACAACCGTTATCTCCTGCAAGCTGTGTCACACATCTATGCAGGACGTGGACTCTTTGATCGACCATTTGATGTCCGAACACGAGGCGCGATACGATAAATCCGTCGATAATAATTTGCAACCTTTCAAATTGTTCAAAGATAAATACCCGTGCCCGATTTGTGAACAGGAGTATCTGTTCTTTGGCAAATTGTTGAGTCACATGTCTCAGGAGCACTCGGAGAATAAACATTTATGCATGCACTGTGGCAGGTCTTTTCGAAGCGCGCCCGGCTTCCGGTTTCACGTGAGAAATTGTCGCGGGACACCGGCCACTTTCAAATGCGACGTGTGTAACTATGAGTGTTCGTCGAAGAGCATTTTACAACGTCACTTAGGGAACGAACACAATATCAAGAGGATAAAATGTAACGTATGCGGTGAGAAGTTTACGGCGCGATATGCCTTAAACAGACACATGATGGACGCGCACGACTCCGGGAACGTGTGCCAGTATTGCGGAAAACAATTCCCCGGCAACTACTTTCTAGTGGACCACGTTGAAAAAATCCATTTGAAAGAGAATGGTGTTAAATATGAATTCCAAGGCATCATCGGCTCGGTTGAACGGAGAAGGAAAAATTGGCAAATAATCTTCAACAACACATCCATAATCCCTTTTAAATGGAAAAAACGATACGTCTGCTTTCACTGCGGGGAGGCTTATGCCGAATACGAGAAGTTCAGGAAACACACAAAATCACACGGAATGTGCACAACGAGCGATCGTGCGTTGACAATGATTACCGGGAAGCACATAGAAGTCAAATTAGATACATCGGAGATTTATTGCGAAATTTGCGATGAAAAATTTCAAGACTTCAAAGTAATTATTGATCATCTTATCACAGATCACAACCTCGAGTACGACAAGGACGTCGACATGCTGTTTCAGGAGTATAGACTCGCCGATAACCGTTGTCGATTTTGTGATGAACAGTTCACTCACTTTAGAGATTTAGCATATCATATAAAAACCTTACACACCCGGAAGGATTTTATTTGCTACAATTGTGGTGCAGGCTTTATGAAGAAAAGATTTTTATTAAACCATCTCCGTGTTTACCACCGCAACGGTGGCTACTCCTGCGAACTGTGCTTACAAATATTCGATTCTCTACATTCGTTAAAAAGACATCAAAATAACTCCCATTCCAGAGATTGTAAAGCTTGCAACGCTAGTTTTCCGTCTTGTACACTCTTACAAAAACATATCGAGCGAGACCACCCGGATGACGGTGATCTAAAATGTGCAAACTGCCATTATTGCCTTAAAAAGTTCCATACGACTGAGGAGCTCAAACAACACATCGGTAGGTGCAAAAAGAAAATGGAAGTGAAAGTCTCGCATGATACGAACCCGAGTAGCACAGATGGCAACAGAAAACAACCGAAAAAGTGGCATAACACTACGCAAATAAGGCGGAACATACACACCGTTTTAGAGTTATCGACGGCCGTACCGTTTATGTTTACCAGTTCTAAATTCTGTTGTTTTTATTGTCCACAAAAGTTTGTTGAATTCGATGATCTTAGAGAACATACGCTAAAGGAGCATTCCGTCATCGAGTCGAAAAGATACTTGAACAGATGTAAAGGTGAACGAGTCACCGTCAAGATAGATATATCGTCGTTGTCCTGCACAGTTTGCCGACTGCCGATAGAAGGTTTCGACAATTTAATAGATCACATTATCAGTGAACACCGATCGCCCTACGATAAGTCCATAACGCGCTGCTTCGAGCTCTTCAAAGTGGCAAAGGACAACACGCCCTGCCCGTACTGCCCGAAAGTCTTTCGATACTTCAATATTCTCCTCAGACATATCAACTCGGACCACAACGACAACAGTATTATCTGCGATTTCTGCGGCAAGAGTTTCAAGAAGAAGTCGAATTTGACAATGCACATAGGGCACTTCCACACCGGATCTTGCGAGTGCGAAATTTGCGGATCCAAATTAAAAAATCAGTCGAGCCTACAACGGCACAAGGCTAAATATCACAACGCGAAAGATGTCAAGTGTCCGAAATGCCCGGAGCAATTCAAGAGCTATTACCACAAACAGAAGCATCTGATCCAGGCCCACGACATCGGGCATAGGTGCAGCTACTGCGACAGGATATTCACCAGGAACTCCTTCATGAAAGATCACATACGGCGGACGCACTTGAAGGAGAAGGACGTGGTCTGCTCGGTCTGCAACGACAAGTTCTTCGACAACTACCATTTGAAGCTGCACATGGTGAGACACCAGGGCCAGCGACCGTTTACTTGCGACGTGTGCAGCAAAACTTTCCTGCGTCGAAAAAATTTGAGCACCCACATGGAGATGCATAAGAAGTATGGTCACGATAACGCGTTATAG
- Protein Sequence
- MSTIIPFKYFTNRFKCFYCGKQFNEGLDLREHTVIEHPVCDENHKCMSLRGRLERPLKIDTTVISCKLCHTSMQDVDSLIDHLMSEHEARYDKSVDNNLQPFKLFKDKYPCPICEQEYLFFGKLLSHMSQEHSENKHLCMHCGRSFRSAPGFRFHVRNCRGTPATFKCDVCNYECSSKSILQRHLGNEHNIKRIKCNVCGEKFTARYALNRHMMDAHDSGNVCQYCGKQFPGNYFLVDHVEKIHLKENGVKYEFQGIIGSVERRRKNWQIIFNNTSIIPFKWKKRYVCFHCGEAYAEYEKFRKHTKSHGMCTTSDRALTMITGKHIEVKLDTSEIYCEICDEKFQDFKVIIDHLITDHNLEYDKDVDMLFQEYRLADNRCRFCDEQFTHFRDLAYHIKTLHTRKDFICYNCGAGFMKKRFLLNHLRVYHRNGGYSCELCLQIFDSLHSLKRHQNNSHSRDCKACNASFPSCTLLQKHIERDHPDDGDLKCANCHYCLKKFHTTEELKQHIGRCKKKMEVKVSHDTNPSSTDGNRKQPKKWHNTTQIRRNIHTVLELSTAVPFMFTSSKFCCFYCPQKFVEFDDLREHTLKEHSVIESKRYLNRCKGERVTVKIDISSLSCTVCRLPIEGFDNLIDHIISEHRSPYDKSITRCFELFKVAKDNTPCPYCPKVFRYFNILLRHINSDHNDNSIICDFCGKSFKKKSNLTMHIGHFHTGSCECEICGSKLKNQSSLQRHKAKYHNAKDVKCPKCPEQFKSYYHKQKHLIQAHDIGHRCSYCDRIFTRNSFMKDHIRRTHLKEKDVVCSVCNDKFFDNYHLKLHMVRHQGQRPFTCDVCSKTFLRRKNLSTHMEMHKKYGHDNAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00404028;
- 90% Identity
- -
- 80% Identity
- -