Pcor055426.1
Basic Information
- Insect
- Platyscapa corneri
- Gene Symbol
- -
- Assembly
- GCA_018907185.1
- Location
- JACCHW010000005.1:2815802-2835569[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0085 2.8 10.3 0.9 1 23 1322 1345 1322 1345 0.94 2 12 0.00031 0.1 14.8 0.2 2 23 1387 1408 1386 1408 0.97 3 12 0.003 1 11.7 1.3 3 22 1558 1577 1557 1577 0.97 4 12 0.71 2.4e+02 4.2 0.2 3 23 1598 1618 1596 1618 0.96 5 12 4.6 1.5e+03 1.7 0.7 3 19 1634 1654 1629 1657 0.67 6 12 0.53 1.8e+02 4.6 1.7 2 19 1683 1700 1682 1701 0.95 7 12 0.13 45 6.5 0.2 1 23 1726 1749 1726 1749 0.97 8 12 0.0097 3.3 10.1 0.4 1 23 1801 1823 1801 1823 0.97 9 12 0.014 4.8 9.6 0.3 3 23 2130 2150 2129 2150 0.96 10 12 0.3 1e+02 5.4 2.1 1 23 2424 2448 2424 2448 0.97 11 12 0.014 4.5 9.6 0.2 1 23 2532 2557 2532 2557 0.96 12 12 0.00015 0.05 15.8 1.1 1 23 2559 2581 2559 2581 0.97
Sequence Information
- Coding Sequence
- ATGGAGTTATTAAATGAAACAGAATGTAATTCCAATAGTGATATCAAAAAGAAAGATGAAAATACCTTGCTTGAGAATAGTGCACACAAATTTATTTCAAAAAAAAAGTTCTATAATACAGTGTTTGCAACCAAAATGAGAAATCGAAAAAAAGAAGAAAAATTTGAGAAACTGGAAGGTAAAGAAGTTTTGTCTGCATGTAAACAAGTTTCGGTAGAAGTAACTCGCCTTTCTTCAAATCGTGTGCCTAAATTAATATCTTCAATAGAGCATAGAAATAGAAGGAAGAAAAAATTAAAATGGAAATTAGGTATATCTAGAAAGAAAAAGAAACGTGATAAAACTGAAAAAGAAATAAAAGTGAATGCAGAAAATATTAGTGTAAAAAACAATGAAAGTGGGAAAAATGTTCAAATTCTTGAGGAAAAAATATTGGTTCATGAAAAAGACAATGAAGATAGAGAGTTTTCATCAGATAAAGATGATACACAAAGAAGAAAGAGTATGAGGCATGTTACACCTGTGATGTTTTTTGATGAAAAATGGGATTATGAGTCCAAGCCTGATAATGGACCTGCTATAGAAGAAAAATTTAGTTGCAGGAGAACCGAATTGTTTATTGGCAAATTAAATACTAGAGAAGCTAGGATTCAAAATATTGAAAAAATATTAAAAGAAGAAAGTAAACCAATCGCCCAAAATAATAATAATTTTGTTGATTGTTATGACAAAGATCCATTAAAACAAACAGAAGAGGATAATACTTTAATTCCACATAAATCAGTTTCTGAAACTAATAAAAATATAGAAAATAATATTTTAGAAGCTTGTGAAAATAATGAAAATAGTGGAAGCATAGAAAATAATGAGAATTTAGAAGATAGTAATAAGGAAGATCACGAAAATAAAGACACAGATAATAGTATTGTGGATATTTTGAAAAGTGTAGAAAATGAAATGATTATCAAAGAATCAAACAACTTATTGAAAGAAGTTATTGAAACCAAAGAACATTGTAAAGATAAAGAAATAACTTGCAGGCGTACAATTCCATTTGTAGGCAAAATTTCTCAAAATGCTTCACTTGAAGAATCGGAAAAATTTACAGAAATAGATTTTATTACAAGTGATGTGAATACCAAACCAGAGTCTTCTAAAAATATAGAAACGCAATCAGAATCTTCTTTAGAAGATGCAAATTTTCCCAAAGATAAAGATACAGAAACTGATTCTTTAAATGATTTGAATACAGATTTAAATACAGATTTAAATATGCCAGTTATTGAAAAATCACAATTAAGTGACTCTTTAAAACAAAAAAATAAATTAAATTGCTGTATATCAGAGAGTGATCAAAAGATAAATACATCTTATAAAACAGATGTTAGAGAAAATTTAAGTGATGATTCTTCAGATTCCTTATCAAATAATGTAACTTTGAACTCAGAAGAATCACTATTTACTAACAATACCCATGAAATTTGGAGCTGCCGAAGAATAGAACCATACTTTGGTAAAGATTATCCTAATTGTAGTAGAACATTACCTTTTGTAGATTCAGTGAATAAAGTGAAACTTCGAGATACACCAAGCACTAGTTTGATACATAGTGATACAAATTTATCGTCAAAATCAGTCACAGATAGATTACAATTGGATAAATCAGATGAATTAAAAGGGAACAAAAATAAAGATAAGAACATTCCAGAAAATTTAAAAAATGAAATAGTTAATACAGTTATAGATAGTGCTGTTAACACAAGTAATAGTAGTGCATCTGGTGAAACGGTAAAAAATGGAGAATGGAAATATAAAAGAAAACGTGGCCTGATTAATTTAAAAAATGAAATTCAGGAAGAAATACGTCCTTCTAAAAAGTCTAAAGTTATAGCATCTCCAGATTCAAAATTAGATACAAATAAAAGTTCATCAACTTTTCTTGAATCTCCAGAAAGGACAATTTGTTCTTTATATTCTCTGAATTGCACGAAGCATGCTCATCATAATTTACAGAAAGACGAATGTTTGATGCCTCACAAAGAAATAATGGAAGATGTATTTGTTTTACTAACCAAATTAGAATACATCAACGATCCGTTAGTCGCCGAATATTTTAAGAAAATTGACTATACCAACAAAGTAAAACAGAACTTACTTCCCTCCAGAAAAAATAAAGTCTGCAAAGATACAACAACAGGTGTGAGCTTAAATAGACTAAGACGATTAAATTCTCACGAAAGTAATAATGAGCAAGTAGCCAAAGATGAATTTTCCAGCTCTAGTGTACCGGATACAAACTCAGATTCAAATTATAGTAATATTCAAATAGATTTGAAGAAAACTCGGATTGAACAACATAGTGAAAGTGAAAGGAGTATTAGTCCACCTATCAAGAGAGCAACTAGGTCGAAAAGAAGGCCACTTAGTGCAACTTCTACAGAGTCGATAAACATTATAAGCAGCAAAAGAAAGAAATGTCCTGTCAATTATGTAGAAAACTTCAGTGACTCGGATACAGCGGAATCCTGCTCATCCAGCTTGAAACAAGAAAGAGCACAAAATAAGAATCGACGGTTGACGTTACGCGATCGACAAAAACTAAGAAGCTACAGTAATCCAGAGATCGATGAAAACGACATGGAAGTTGAAAAATTTACTCGAATTGGTTTATCACGTAGTTCCCGTAGTAAAATGCGTAGGACCAGGAATATATCAAGTTCGAGCAGCGCATTTCAAAGTAATGATACAGATGACTCTAACTCGTTCACTGATGATGTTTGTTCTCGAACCACGAGCATCGCTGAGAACGTCGAAAAGGGGTCGAATATTCAGTCTATAGATAAAAACTCGAATGTAGAGTTATCAAATGAACCGAGAGAACATTTCCCTAATGAATGGTCTCAAGATCAAGAGAAATCGGACAATGGTGTGGCACAAAACTTAGTAAATCATCTACGATTACCAACACGCAACCGAGCTGGTCAGTTCGTACGTATGGTGCATTCAGAAAGGTCGAGAAATATGAGTCCGAAGCAACGGGTTTCTAGTCGAAATACAAATGAGCAAATGCTCTTATTGTCTAAGACTTCAATCAAGAACGACGGCGTTACCACATCAGACAGATTCAGAACATCTGCAGTGGATGAATTTTCCGACAAACCAAGAACAAGGAGCAACTCGTCTCGAAGTGAAAAGGATAATTCTTTTATTTATAATAGTAGATCTAATACGCCATCCAAGTTATCGAAACAGGTCAAGAGCAACGCAATGGGAAAACTTAGCAAATCTAAATCGAATCTTGAGCTTCTGTCCACCCCCAAATACACAATTAAAAACATGCCGCTTACGAATCTCAAGGTTCAACTAATAAAATTGGAAACTGTTTGCGATAGTTTCGAAGATTATTCAGCTAGCGAGATAGAATTATTGACAAGAAAATACATTGATCTGTTGATGAACTCGAATTTTACTTGCGATACCTGGCGTAATCCCATTAACTATCATCGATCTGGAGGATTTACTGAGAAACACATCGAACAAGTTGATAATTCCGATTGCGTATCAGATGGTGACATGCAAGATGAAAGTGAAAGGATGACTGGGGGAACGGAAATCGAAAATACTTCTGTAATAAAATCAGCTTTAGAGGACAATGTTGAAAAGCTAAATGGGAAATCGTCTAAGCAGATTGAAACTAAGCTTTCATCGTTTACGACCTTGGAATCTGCGATAGCTACTCTCGTAGATGCAGATCCTGGTGAACAACGAAATTTCGGAGCTGTAAATATTTCAGAAGCTTTGGGTACTCCAGCAAGTACTGGATTAGAAAAGGAGAAAGAGCAGATAATACAATCGAACGAATTAATGAACGAAGCTAATGCGAATCAAGATCAATTAAAGGCAAGTGATAAAGTACAGGGACCGACGGGTCCTGATACAATTTTATTAAATGGCACGGCCATGTTCCCTTGTACAGCTTGCAGTAAAATATTTGTTGTTGAAAGTTCACTTAAACAACATCAGACGCACGATCACAAAGATAATGATGAAGCGGCAGATGGTTCCAATACGAAACAAAAAAGCCAAGTTATCAGTAGTTCAACTGCGAAAAAATCGATATCAAAATGTAAGAAGAAGTTTAGATGTTCGGATAGTCTGAAATGTACAATTTGCTCAGTGATATTTGATACAAAGGAATTACTTTTTGATCATATAATGACGCACAATGAGCAAGAATTACAGGAAGCATATAAAGCAGCTAAAGCTAAAGCACAGCAGCAACAAAGTGAGACATCGAATAGCTTGTCTGAGGAATCGGATAAAGAGCTGCCACAGGAAAAAGTATCGCAGAATAACGAGGCGAACAAAAAAAAGCAAAAGGAAAAGAGTAGAAGGAAAAAGAGTACCGATAGTAGCATTCGAAGTAGTAGGTCATCAATAGATACCGAAGAAGTGGTTTTTGAAGATCCATTACGGAATGCATGTACCATACCCGGGCCGGTAACTGTGAGCGAGCGACAGGAGCAGATGGTAGATTCGGCTTGCAACGAAGTCTTTGCCAACATCGAACGACCCCACAACAGTACGGCATGTAATAAGCCCATAACCATCTGCCAGTGTCATGCGCACGAAACTACGATTCAAGATCTTCAAATTGAGATGGTGTTGCTTTGTAAGATCTGTAATGTTGTTTTCCGTCGCCGTGATTGTTTTGAGGTTCATTACCGTACAAGTTCGGATTGTCGACGACGTCGCACTAACAACGAGATAACTAAGATGCCCAAGCTTTTCTGTAGCGGATGTCCATGCGTGCTAGACTCACTTATGGATATGCGGGCGCATTTGGAAATGCATGCGAGGAAGAATAGCCAAGGAACCGTCACTTTTATATGCAACATCTGCAAAGTTGCATTCTTCGGTTGCAGATTGCCGTTTAGTTCAGAACCAGAACTGTTGAAACATAAGACTAACCCTTGTCAAACTCAACAATCGGTGGTTCCACGCATTGATCCCCAAGAGAGTAACCGTCTTCAAATGATAAAGCTTATTTGTGATTTGTGTAAAAAATATTATGTAAGCAAGGAAAACTTTGATAGACATTGCAGTGAGCGGAATCACCTCAAAACTCCCATTACAAAATTTTCCCGACTGCCTATTAATGCCAACGAACAGGCATTCGTATGTAGTCTTTGCCGTGCCGTCAGTAAATCCCTTGACGATATGAAAGAACATTGGAAACGTATTCATAGTCCTATAATGGAACTTTACACTTGTAAGACTTGCAATGTAGTGCCCTCAAATGATGTCACAAATTACACTTACGAGAAGTTTGAGAGGCACTGCCGTATCATTCATAAGAGTGAAGTCATAACATGTCTTGTGTATTTTGTTACTGCGAGATACGTATGTAACATCTGTAGATTTGGCTTCGAAACGGAAAAGTCTATGAAGGAGCATCAGGTTATACATCAGAAAAGATCGTCTCAGAACAATAATGTATCAGCATCAGGATTGCCGATTGAACCGCAAACGACGACACTTTGGGTGGCTGATAAACAAGTGGCTGCCGATGGTGGTAGAAAAGTCCATCCCGTATATGTACATTATCCTGGTATTAATGGTAATATGAACCATCCGGTGCCAATGTTACCTACTCCAGTGCCAGTGAACCATCCAAGTTCAAACCATTCGCATATTCGTCATACGAACCATGTAAATAATCAAGTGAACGTTGTAACGAGCAACGTTGTCAGCAATCCTAGCACAAATGCGAGCTCGAATCCTGGTAACACTACCACGAATTCAATGTTGCGCAGTATGTTGGCGCAGCGGGCGCTCGATCAGCAGCATCTTCCACAGCAAAGTAATAAGAATTCCCCTAATGTCGAAACAATATTCATCGATTCGAGATCGAATAGTCCGTTATCGGAATCTCCAGTCACCTCAACAGACAAGTCTGGAACAAGTAATACTGATGCAGGCGTATCAAGGAAAGCTTATATGACAATGGTGAATCCGAACTTCGAGTCATTGTTGGGGACAAATAGCATAACGCAGATGAGTGAGAGTAATAATTGTGTTTTGGATAAAGAGAATTCGGATTCAGGGGGTAATGCTACTCCCGTCAGCATGGACTCTTTGACACCACAGCCGTTTGAGGTGGTTCTTGTGACTGACGACTTAAGTGAAAACTCCAACTGCGATTTGCCAAATATAAACGACAGAACTAGACCTTCTACGGAGAAAATAATTGACATGGCGAATTCATCCTTGAATCAACAGAAGCAACTTCAGAGCACGGAATGCAACGAGAGTCCTGTCATCAAGTCTTCCAAATTTCTAAGAGTTCGTTCAATAGCCGAACTTCAGCGTATGAAGATTAATCTGTGCTCGATATGCGGTTTGAGTTTCGATACTTTGCAAGCTTTTGAACAACATTCACAGCAACACGAGATGGCCGGAGAGTTGAACCGGACGACACCGGTACAAATGATTTCGCCGATGCTTGCACAGGGTAATAAGGCATCAAAAGATCCGAAAAATGTTCTAATTTCGCAGATGAGAAAGAAAATGGCTTTGTTAATACCTACTGGAAAAGAAATGGCAAATAGTTTGGATACGCATAACAAAACGAATTCATCGGCGATTATCAACCATCTTCAACATCCACAACACCATCCCCAACCTCCTTACTGGTTTGCATCGTGCAATGGAAGATATAATGCCCCACCAACAAGCATGGGATACAACGCCTACAGTCGGCAGCATCCGCAACACTATCCCCAGCCACATTATCAGCAACACCAAAACGAACAAATGCACCATTCCAGTATGATGCGACGACCGGTGAATCTGAGTAATTCAGGTGGTAATTATATACCTCGAGGTCCTCCTCCCGCCTACCCCAGTACCTCCAGCTCAATGGTGCCCAGTCGACCTAGTGCTATACAGCTGCCGGATAGAAACACTGCGGGTAATGCCACACCAACAACAAAGCGACCCTCTGGTGCTGCCACAAGAATACCTCAACAAAGCTTACCAAACTACAGCGATATCAATGAACACCGACAAGCCAGTTCCCGAATACCGTACAGCTCAACTGTGGATGTAAACAATTCAAGAAGTATGACGAGTGCAGTTGCGAGACATTCCCAGCATCCTCATTTCAAGTCCTATAGTCGACATTCCGGTGAATTTAACTACTCTGGCAGTATTGGCAACAATTCTAATTATCATCATTCTCAACAGCAGCATCCGTCAAAGATTATTTATAGCTGTAAGCTTCAGGGTTGCCATTTTCGAACCGACAGTTTTTCTGCTCTCCGCGCCCATGAAAAAAACCATGTGAATCAGCAGATCTGTCCTATACCTAGTAACCAAATGCAACAACAACGTCTTCCCTTAAAACACGTTCCAGTCAGTCAGATGCCCGAAAGGCCACGTCATCCGATACCGACGCTTGGCCGTCAGCCAACCAATATACCAGAGAAGCGCAATATTTGCCGTTTGTGCAACTTTTGTTGTAGTACAGATCCCGAAATGTTAGATCATGTGGCTCAATGTCATGGTGCGGTAAATAATCAAGTTTGTTGCTACGTTTGCGATTACTGCTCGAATCCGCTTATTTTCGAGACAGAGGACTTACTGCGTAAGCATATGAATGTCTATCACAATCACTCATGTGAATTTTGCAATAAAAGGTATCCTTCGAAAGAAGATCTGATGCTGCATATGGAAGTACACGCAAGAGGTACCTGA
- Protein Sequence
- MELLNETECNSNSDIKKKDENTLLENSAHKFISKKKFYNTVFATKMRNRKKEEKFEKLEGKEVLSACKQVSVEVTRLSSNRVPKLISSIEHRNRRKKKLKWKLGISRKKKKRDKTEKEIKVNAENISVKNNESGKNVQILEEKILVHEKDNEDREFSSDKDDTQRRKSMRHVTPVMFFDEKWDYESKPDNGPAIEEKFSCRRTELFIGKLNTREARIQNIEKILKEESKPIAQNNNNFVDCYDKDPLKQTEEDNTLIPHKSVSETNKNIENNILEACENNENSGSIENNENLEDSNKEDHENKDTDNSIVDILKSVENEMIIKESNNLLKEVIETKEHCKDKEITCRRTIPFVGKISQNASLEESEKFTEIDFITSDVNTKPESSKNIETQSESSLEDANFPKDKDTETDSLNDLNTDLNTDLNMPVIEKSQLSDSLKQKNKLNCCISESDQKINTSYKTDVRENLSDDSSDSLSNNVTLNSEESLFTNNTHEIWSCRRIEPYFGKDYPNCSRTLPFVDSVNKVKLRDTPSTSLIHSDTNLSSKSVTDRLQLDKSDELKGNKNKDKNIPENLKNEIVNTVIDSAVNTSNSSASGETVKNGEWKYKRKRGLINLKNEIQEEIRPSKKSKVIASPDSKLDTNKSSSTFLESPERTICSLYSLNCTKHAHHNLQKDECLMPHKEIMEDVFVLLTKLEYINDPLVAEYFKKIDYTNKVKQNLLPSRKNKVCKDTTTGVSLNRLRRLNSHESNNEQVAKDEFSSSSVPDTNSDSNYSNIQIDLKKTRIEQHSESERSISPPIKRATRSKRRPLSATSTESINIISSKRKKCPVNYVENFSDSDTAESCSSSLKQERAQNKNRRLTLRDRQKLRSYSNPEIDENDMEVEKFTRIGLSRSSRSKMRRTRNISSSSSAFQSNDTDDSNSFTDDVCSRTTSIAENVEKGSNIQSIDKNSNVELSNEPREHFPNEWSQDQEKSDNGVAQNLVNHLRLPTRNRAGQFVRMVHSERSRNMSPKQRVSSRNTNEQMLLLSKTSIKNDGVTTSDRFRTSAVDEFSDKPRTRSNSSRSEKDNSFIYNSRSNTPSKLSKQVKSNAMGKLSKSKSNLELLSTPKYTIKNMPLTNLKVQLIKLETVCDSFEDYSASEIELLTRKYIDLLMNSNFTCDTWRNPINYHRSGGFTEKHIEQVDNSDCVSDGDMQDESERMTGGTEIENTSVIKSALEDNVEKLNGKSSKQIETKLSSFTTLESAIATLVDADPGEQRNFGAVNISEALGTPASTGLEKEKEQIIQSNELMNEANANQDQLKASDKVQGPTGPDTILLNGTAMFPCTACSKIFVVESSLKQHQTHDHKDNDEAADGSNTKQKSQVISSSTAKKSISKCKKKFRCSDSLKCTICSVIFDTKELLFDHIMTHNEQELQEAYKAAKAKAQQQQSETSNSLSEESDKELPQEKVSQNNEANKKKQKEKSRRKKSTDSSIRSSRSSIDTEEVVFEDPLRNACTIPGPVTVSERQEQMVDSACNEVFANIERPHNSTACNKPITICQCHAHETTIQDLQIEMVLLCKICNVVFRRRDCFEVHYRTSSDCRRRRTNNEITKMPKLFCSGCPCVLDSLMDMRAHLEMHARKNSQGTVTFICNICKVAFFGCRLPFSSEPELLKHKTNPCQTQQSVVPRIDPQESNRLQMIKLICDLCKKYYVSKENFDRHCSERNHLKTPITKFSRLPINANEQAFVCSLCRAVSKSLDDMKEHWKRIHSPIMELYTCKTCNVVPSNDVTNYTYEKFERHCRIIHKSEVITCLVYFVTARYVCNICRFGFETEKSMKEHQVIHQKRSSQNNNVSASGLPIEPQTTTLWVADKQVAADGGRKVHPVYVHYPGINGNMNHPVPMLPTPVPVNHPSSNHSHIRHTNHVNNQVNVVTSNVVSNPSTNASSNPGNTTTNSMLRSMLAQRALDQQHLPQQSNKNSPNVETIFIDSRSNSPLSESPVTSTDKSGTSNTDAGVSRKAYMTMVNPNFESLLGTNSITQMSESNNCVLDKENSDSGGNATPVSMDSLTPQPFEVVLVTDDLSENSNCDLPNINDRTRPSTEKIIDMANSSLNQQKQLQSTECNESPVIKSSKFLRVRSIAELQRMKINLCSICGLSFDTLQAFEQHSQQHEMAGELNRTTPVQMISPMLAQGNKASKDPKNVLISQMRKKMALLIPTGKEMANSLDTHNKTNSSAIINHLQHPQHHPQPPYWFASCNGRYNAPPTSMGYNAYSRQHPQHYPQPHYQQHQNEQMHHSSMMRRPVNLSNSGGNYIPRGPPPAYPSTSSSMVPSRPSAIQLPDRNTAGNATPTTKRPSGAATRIPQQSLPNYSDINEHRQASSRIPYSSTVDVNNSRSMTSAVARHSQHPHFKSYSRHSGEFNYSGSIGNNSNYHHSQQQHPSKIIYSCKLQGCHFRTDSFSALRAHEKNHVNQQICPIPSNQMQQQRLPLKHVPVSQMPERPRHPIPTLGRQPTNIPEKRNICRLCNFCCSTDPEMLDHVAQCHGAVNNQVCCYVCDYCSNPLIFETEDLLRKHMNVYHNHSCEFCNKRYPSKEDLMLHMEVHARGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -