Basic Information

Insect: Platyscapa corneri
Gene Symbol: -
Assembly: GCA_018907185.1
Location: JACCHW010000003.1:3812443-3817806[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.012 4.1 9.8 0.1 2 23 363 386 362 386 0.97

2 4 2.3e-05 0.0078 18.3 2.3 1 23 392 414 392 414 0.98

3 4 1.5e-06 0.00051 22.0 6.3 1 23 420 442 420 442 0.98

4 4 1.4e-05 0.0047 19.0 2.6 3 23 450 471 448 471 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.012	4.1	9.8	0.1	2	23	363	386	362	386	0.97
2	4	2.3e-05	0.0078	18.3	2.3	1	23	392	414	392	414	0.98
3	4	1.5e-06	0.00051	22.0	6.3	1	23	420	442	420	442	0.98
4	4	1.4e-05	0.0047	19.0	2.6	3	23	450	471	448	471	0.97

Sequence Information

Coding Sequence: ATGAGTGCGAAGATAAGCGTCGACTGCGTATCAACGTACAACTACGAGCGAGACGATATGGGGAGAGATAGTCCAGGTGCTTTGTTGGATATGCTAGCGGAGGTGGCATCCCAGACATTACACTCGGAAAAGAAACTTAGTGAAATAGATACTAAAAATACAAAACAAAAAGAAACAAAACGCAAGAGTCAACAGATCACATTTAATGTAACGCAGTTGCTGTCTATGCCAGCCACTCAACTTGTCAAACTATTTTCAGTGTTTAGTAGCGATGAACTTAAAAGACAGTATTCTTACTCTTGTGCATTAGTTCCTGGATGTGGTCAGAACTATACTAGTTTTGCTAGCGAAGGCAGAGCTAGGATGTCTATTAAGTCACATCTTGCGGATCATTTAGAATTTTTGAAAAATAATGCAGAGACTTATGCCTCTTTTACAGCAACAGCTGTAAAATATGCTAAACCAAAATCAACTGTACAGAATAAAAAAGTTAAAATTCAACAGACCAAGAAACCTCATAAGGAAACCCTGAATAAAGAAAATAAGGATACTAAAGTAGGAAAATCTACTAATTATTTGCGTAAAATATTATCTAATGAATTGAATTTAAAAGAATTGGAAAATAATACTGATCAAGATAAAACCAATGATCTTAGAGATTCAAATAATGCATTTGATGCAAAAAAAGATACATCAGATGTTAAAGTCTTGGGAGACCATAGTTACTATGAACATGTAAAAGATGAAAATATAAATGAACAATCTACTTCTAGTGTTAACAAAGTACCTGTTAATTCATTAACTAATGAAAATATCATGTTAATGGTAGTTGAGAGCAATGGCGTTTGTATAAAAGATCTTCATAACACTACAGAAAATACTTCAAAACATACAAATGCAGAAGATAATGAAGTAGAAAACATGACTCTCTGGAAAGAAGAATCATACACTGCTCCAGATGCTTTTGTGCCTGCAAAACCAAAAGGAAAAGCGAAATTTATTGGTACTAGTAAAGAAGAAAGAGAAATGGCACTTATATTGATCGAAAAAATTCGAAAGAAAGGAAATCCAACTGGAAATAATTTACAATGTCGTATTTGTGATCCACCTCGTAGTTTTACGGCTCCTACGACTTTAGTGTCACACTATCGTAGTCATGCCGGAATTAAACCGTATGAATGCCGAATTTGCAGAGCAGTTTTTACCCGGAGACATAGCCTTAAATATCATATGTTAATACATCAAAATCAAACTCGTTTTACTTGCGCTGATTGTGGAAAAAAATTCAGACATCCTTCACATTTTCGTGAGCATCGTAGGAGACATACTGGAGAAGCACCTTTTGGTTGTGATGACTGCGGACAAAGATTTAAAACACGAAACACATATAAACGTCATTTGAAAACTCGTCACGGTAAAGTTCTCACGATAACTGGTGAATTATTGCATCTCTCAGAAGAGGATTCAAAAAAAGTAAGAACAAAAAATCGTCGAAAAAAACAGGATATAACTGAAAGCATTACAAGTGAAGCCATAAATTCTTCAGAAGCCATAATGGATCAACCACAGAGTGAAGAATTCAGTTGGGAGCAGGAACAAGTTTGCAACAACACAAGTGAAAATAAAGTTCAACAATGTATTGATAATGCCATATGGATGTATCACAATCAGACTGGTGTAGCAACTGAAGAGAACTACAACGAAATTCAAGACAAATCACAGATAAAGACTGACTTTAACGAGACTGAAATAGAAAATAATTTCGAAAACAATGAAGTAGTAATTGCACAAACTGATTCGGATGGCACTTTGCATTTTGAAAACTATAACTATTCACAAGATACCGTTTATACAGATAATAGCACAATGCAGTTTTCTAATGAACCTAATGTTTGCACAAATTTAACAGATAATGTAAAACAGTACGAGAGTCAAGAGGAAGCCATTGTTGAATACCAAGAATGTACGGATAATTATACTGAAAACATAGATCCTCTTTTTACAGTAAAAGGAGAGTCTGAAAATAATGTGTTTGTATTAGACGAACAAATAATATCTCCACAAGAAGTTGCAAATTCAGAGTTCAAGGAATTACTTTCTACGACAAATTCTACACAAACAGAAGATATAATGGAAATGAATACAAATTCTGACGAGCAAACATTAAAAATAATACCATGTCAAGTAAAAGTTTGCGACAACAGCGGTACGACGACATTACAGTTGCTTATAAAAAATAGCAAAATAGCTTTACTTGGAAACAAAACTCAGAGTATCAATCTATTACAAAATGGAAAGCAACACACTATTTTACTTTTAGCTAGTGATGAAAATAATGTTTTGGAATTAGATAATGGTATTATTGAGGGATCAAAATCGCTACCCGTAATAGCTGTTCCAGCTGAATAA
Protein Sequence: MSAKISVDCVSTYNYERDDMGRDSPGALLDMLAEVASQTLHSEKKLSEIDTKNTKQKETKRKSQQITFNVTQLLSMPATQLVKLFSVFSSDELKRQYSYSCALVPGCGQNYTSFASEGRARMSIKSHLADHLEFLKNNAETYASFTATAVKYAKPKSTVQNKKVKIQQTKKPHKETLNKENKDTKVGKSTNYLRKILSNELNLKELENNTDQDKTNDLRDSNNAFDAKKDTSDVKVLGDHSYYEHVKDENINEQSTSSVNKVPVNSLTNENIMLMVVESNGVCIKDLHNTTENTSKHTNAEDNEVENMTLWKEESYTAPDAFVPAKPKGKAKFIGTSKEEREMALILIEKIRKKGNPTGNNLQCRICDPPRSFTAPTTLVSHYRSHAGIKPYECRICRAVFTRRHSLKYHMLIHQNQTRFTCADCGKKFRHPSHFREHRRRHTGEAPFGCDDCGQRFKTRNTYKRHLKTRHGKVLTITGELLHLSEEDSKKVRTKNRRKKQDITESITSEAINSSEAIMDQPQSEEFSWEQEQVCNNTSENKVQQCIDNAIWMYHNQTGVATEENYNEIQDKSQIKTDFNETEIENNFENNEVVIAQTDSDGTLHFENYNYSQDTVYTDNSTMQFSNEPNVCTNLTDNVKQYESQEEAIVEYQECTDNYTENIDPLFTVKGESENNVFVLDEQIISPQEVANSEFKELLSTTNSTQTEDIMEMNTNSDEQTLKIIPCQVKVCDNSGTTTLQLLIKNSKIALLGNKTQSINLLQNGKQHTILLLASDENNVLELDNGIIEGSKSLPVIAVPAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00739412;
90% Identity: iTF_00464231;
80% Identity: -