Pcor002618.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Platyscapa corneri
Gene Symbol
ush
Assembly
GCA_018907185.1
Location
JACCHW010000003.1:8033758-8044046[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.0052 1.7 10.9 0.4 2 21 282 301 281 306 0.92
2 8 3.6e-05 0.012 17.7 1.3 1 23 342 364 342 364 0.98
3 8 0.082 28 7.2 1.6 3 20 410 427 409 429 0.93
4 8 0.012 4.1 9.8 4.4 2 21 665 684 664 685 0.94
5 8 0.057 19 7.7 0.0 3 20 712 729 710 731 0.91
6 8 0.0052 1.7 10.9 0.0 2 23 770 791 769 791 0.96
7 8 0.0076 2.5 10.4 1.4 1 23 797 819 797 819 0.99
8 8 0.08 27 7.2 0.5 3 21 938 956 937 957 0.92

Sequence Information

Coding Sequence
ATGGTTCTGCTCGCACGACGGATTTCCGGTTTTAAATGGGAGGATGAGGAGTGGAGCGACTCCGAGAAGACACCATCCGTGAGCAGCGGATTGGAGGGTGGAGGCTCGGCTGTTTCGAGTCCCTCGGGTCAGCTCGGTGACGACGACCTCGTCGCCCTGCCGCCGCCACCGCGGCTCAACGCCGTCGCCGGGATCGCGAACCTGGCGCCGGAGGACATCCGGCTGAGGCTCAGTGTCCTACCGGAGGATGCGAGGAAGCGACTGGCCTCGCTCACCGAGGACTTCGAGAGCGCACGCGCCTTGCGAGAGCAACAGCGGATCCAGCAGCAGCATCAGGTGCCCTCACGACCCAACTCGGTCCAGGATTGTAGCCCGAGATCCGTGGGACGGGGCGAACCCGCGGACGAGGACTCAGGCATGGCCATACGCGAGGACGAGGGCAGTGTCGGCCGCGCCTCCTCGTCATCGTCGAGTGGCTGCTCGGCCGGAGTTCGTCGAAGTCGCGGAGATGCGCGTCGGAACTCGGACGACTCGCGGCGACCCGCAGCTGACGAGCCGAGTCTTGCCGAGTCCAAGAGGCCGCGCCTCGAGGACGAGGCCGCGGCACCGAGACTGAGACTGAACGCTAGTCTGGCGACGGATCCGGCCCTCAGACCCCAGGTCGTCGCTGCTCTCACCATCAAGCCTGAGAACACAGCCTCGCCACCCAACCCCACCCCGCCGCTCTCCGCTGGCCTTCAGAACGCGATAGCGACGGGACGGCTGTTCGTGTTGCCCAACGATGGAAAGGACGGCCTGGGCGTGGAGACGGCCGCCGGCACAGTGACTCGACCCGCGGCCCTCGTCTGCCCGCCTTGCGGCATCCGCTTCAGCTCGGCAAGCACCCTCGATGCCCATCAGAAGTACTACTGCTCGCATCGACCTCGGCTTGAAAGCGACGCCGAGAACAACGACGAGGACGAGGATAAGGGAGCACCTGGAGGCGGCCCCGGGGGAAACAGCAAATTCGAATCGCGGAAGGCGTATGCGTGCCCCCACTGCTCCTACAGCGCCGACAAGAAAGTCTCCCTCAACCGACATATGCGCATGCACGCAGCTTCACCCGTACAGCCGGTACAGCAGGTCCAGGCGGCCCCGGCGATGCCGGTCAACTCGGCCCAAAACCCAGGACAGCACAACAACACCCTCGCCTCCAATGGTTCGCTCAACGAGGAGGCCGAGAGATACTGCCGGAACTGCGACATCAGGTTCAGCTCACTAAAGACATATCGGGCCCACAAGACCCACTACTGCAGCACGAGGCATGTGGTGAAGGACACACCGCCAACCTCTTCCGCAAGCGCCTCATCTTTGAAAGGCTCGCCACCGACGAGCTCCAGTCCGGGGGACTCGCCACCCCCGCAGCCTTGCCTCGCGCTACCCACCAACCCCATCCTCATCGTGCCGTACTCACTCGTGCGCGGTGCCTCGGTCCTCGCGGCACCAGGTCTTCCGGCCCCCGACACGCCTTGTTTCCTACTACCGAACGGCACGTTGCAGCCGATGGCACGCGGCCTCACGAGTAGCGCGACCTCCGCAACGACCCCGAACCAGGGTCTAGGTCCCAACATCAACCACGGCGTCGTCATGGAGTCGCCCACGTCTGGCGTCGTGGCCTCGAGCGTCCTCAGGGCAGCGAACAAGCCCGCGACGCCAGCTCCCGTGGGCCCAGTTGCGGCCAACTCGCCCAACTCCGCGGCCTCTGCACCCCTTGACCTCAGCGTCAGGAGATCACCGGATCATGAGAAGGAGAATCGAGTCTCGCCATCTTCGCTGCCGCCGCCTCCAGGCAGCCCGAGGTCCAGAGGTAGTGCGAGTCCACGCACCAGATCCATACCGACGCCACAAGCGCCGGAAAGGATTCCTCCAACGCCACCCACTGAGTTGGCATTGAGACTCGCGGAACTACCACCGCCGCCCGTTCCTGGAGTGCTTGTCAAACAGGGCGTGTCCAGATGTAAGGAGTGCAACATAGTGTTTTGCCGCCATGAGAACTTCGTCGCCCACAAGAAGCACTACTGTCAGGCACGCGAGAGCAGTGTGACGAGTCCCCCGCCTCCTGGGACGCCTTCGCCGCCGCTCGTCCAGTTGATTTGCGCGGCCTGCGGTATCAAGTTCGCCTCCATGGACAACCTCGTGGCTCACCAGGCCTTCTACTGCCCAAAGCGGCCCGACTCCCAGGATCATCATTCGCGTTGCCCCAAATGCAAGACGACGATCGAGGCCGGTGTTGCGCACACTTGCACCAGCGGTCAAACGGGAGGATGGCGATGCCCCGTATGTGGGGCTGTGAGCCCGACCGCGGGTGCGGCCCAACGCCATATGGACTCACACCAGGGAGTCAAAGCTTTCCGCTGCACGATCTGTCGGTACAAGGGCAATACTCTACGAGGCATGAGGACGCACATCAGGATGCACTTTGAGAAACGCGGGGCTGACCTTCAGGAGGAGAATTATATAACGTGCGTTTTGGAGGATGACGTTACGGCGCCAACGCCCGAACCAGCACCAGCCACCACCCCTGAAGAAATTCCTGTAGACACGCAGCAGGTGAACGGCAAAAGCGACGCGCTGGTGCGCAAGAGTCCCCAACCGCCCCCAGCCGCCACATCACCGGCGATGTCACCTTCACCGGCTCAGCCGGCAACAGCAGCCGCTGCCAGCTGCCGCTGCCGCCGCCGGCAAGGTGAAAGCAAAGGGGGGAAGGCGCGCAGAGGAAACGCCGCCCCCCGTAGGAGGTCTCTGACGCGATTAATGAGCGGTCCGCGCTACTGTCGCTCCTGCGACATCAGCTTCAACTACCTGAGCACCTTCATCGCCCACAAGAAGTTCTACTGCTCGAGCCACGCTGGCGAGGCTAGCAACAACAACAACAACAACAACAATAATAATAACGCGGCGGGGGCGGGGGCGGCGACCGCGACCGCGACTCCACCCACTGGCCGAACAGAGGCCTCTGTACTTTAA
Protein Sequence
MVLLARRISGFKWEDEEWSDSEKTPSVSSGLEGGGSAVSSPSGQLGDDDLVALPPPPRLNAVAGIANLAPEDIRLRLSVLPEDARKRLASLTEDFESARALREQQRIQQQHQVPSRPNSVQDCSPRSVGRGEPADEDSGMAIREDEGSVGRASSSSSSGCSAGVRRSRGDARRNSDDSRRPAADEPSLAESKRPRLEDEAAAPRLRLNASLATDPALRPQVVAALTIKPENTASPPNPTPPLSAGLQNAIATGRLFVLPNDGKDGLGVETAAGTVTRPAALVCPPCGIRFSSASTLDAHQKYYCSHRPRLESDAENNDEDEDKGAPGGGPGGNSKFESRKAYACPHCSYSADKKVSLNRHMRMHAASPVQPVQQVQAAPAMPVNSAQNPGQHNNTLASNGSLNEEAERYCRNCDIRFSSLKTYRAHKTHYCSTRHVVKDTPPTSSASASSLKGSPPTSSSPGDSPPPQPCLALPTNPILIVPYSLVRGASVLAAPGLPAPDTPCFLLPNGTLQPMARGLTSSATSATTPNQGLGPNINHGVVMESPTSGVVASSVLRAANKPATPAPVGPVAANSPNSAASAPLDLSVRRSPDHEKENRVSPSSLPPPPGSPRSRGSASPRTRSIPTPQAPERIPPTPPTELALRLAELPPPPVPGVLVKQGVSRCKECNIVFCRHENFVAHKKHYCQARESSVTSPPPPGTPSPPLVQLICAACGIKFASMDNLVAHQAFYCPKRPDSQDHHSRCPKCKTTIEAGVAHTCTSGQTGGWRCPVCGAVSPTAGAAQRHMDSHQGVKAFRCTICRYKGNTLRGMRTHIRMHFEKRGADLQEENYITCVLEDDVTAPTPEPAPATTPEEIPVDTQQVNGKSDALVRKSPQPPPAATSPAMSPSPAQPATAAAASCRCRRRQGESKGGKARRGNAAPRRRSLTRLMSGPRYCRSCDISFNYLSTFIAHKKFYCSSHAGEASNNNNNNNNNNNAAGAGAATATATPPTGRTEASVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00305862;
90% Identity
-
80% Identity
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