Pcor039984.1
Basic Information
- Insect
- Platyscapa corneri
- Gene Symbol
- -
- Assembly
- GCA_018907185.1
- Location
- JACCHW010000021.1:1453635-1456169[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.07 23 7.4 0.5 1 23 101 123 101 123 0.96 2 16 1.2 4.1e+02 3.5 1.1 1 23 151 174 151 174 0.76 3 16 0.39 1.3e+02 5.0 8.2 3 23 238 259 237 259 0.97 4 16 0.23 78 5.7 0.7 1 23 285 308 285 308 0.97 5 16 0.86 2.9e+02 4.0 0.3 1 23 444 467 444 467 0.90 6 16 0.016 5.5 9.4 4.1 1 23 482 505 482 505 0.97 7 16 3.2 1.1e+03 2.2 1.1 1 23 515 538 515 538 0.90 8 16 8.8 3e+03 0.8 2.2 1 23 551 573 551 573 0.73 9 16 0.015 5.1 9.5 1.4 1 23 586 609 586 609 0.97 10 16 0.037 12 8.3 1.8 1 23 628 651 628 651 0.95 11 16 1.4e-05 0.0047 19.0 1.3 1 23 657 680 657 680 0.95 12 16 0.00031 0.11 14.8 1.2 3 23 687 708 685 708 0.93 13 16 0.00085 0.29 13.4 0.4 1 23 713 736 713 736 0.97 14 16 7.4e-07 0.00025 23.0 0.6 2 23 743 764 743 764 0.97 15 16 2.1e-05 0.0071 18.5 0.4 1 23 770 792 770 792 0.98 16 16 4e-05 0.013 17.6 2.2 1 23 798 820 798 820 0.97
Sequence Information
- Coding Sequence
- ATGGTGTATAATTCTGTGATAAAACTTACACTAACCAAGCAATTTTCTTTCGTTTTCAGGATTCAGTTGAGAGGTGGTCATCGACTCGTCTTCCAGAAAAAACTTGTGAAAATCAAACCTTGGCAGGTTATAGAATCCTGGGATAATTTGATTGGCGCCAGCTCCTCACAAATGATCCACGTAAAAACTGAACCGTCCGAAGTAGTTTCGAACGACTTCGAAGAAGTATCAATTGATGGCAGTGACACAATCGGTGAAATCGCGACCAGACTTCCTAAAGTTAACAACGAAGTTATTGTCTACATGTGTAGTATATGCAAACTGTACTTCCCCTTGAAACGTATGTTAGACGAACATAAATCGGTCCATGCAAACACCAATAAAGAACAAAAACTTACCGAAGGGCAGCGAATTTTCTACGCAGGTTACCACAAAGTTAAAAGTGGACAATACGTCTGCAACTACTGTCCTTTCCGTTCCTTCGTACGCACAACTGTTTCATCGCATACAGCACGAAAACACGCATCACTAGTACAAAATAATACCGATTTTGAAGTTTCTCAAGGTAAACTTGAAGCAAATCAGAAATCGGTATTTAAGGTTGAAATATTTGAAGATGACGATGAAGACTCTTGGCCAATGGAGGTTGTTGAAGAACTGGAAGAGAACAAATCTGAGATGGAAGAGATCGTTACAAGCAAAATACGTATCTGCCCATATTGTTCCTTCCACACGTGTAATAGTTCAACTTTTCACTCTCACATCAAAAGAAAGCATCGCGAGAGTTGGCTGAAATCTATTGAAAAGAATGTTGTTCCCCTTGAGACTATCACAAAGCTAGACATAAATGTGTTCAAGTGTCAGCGTTGTCAATTTGTGACACCAAAGCGAGCAATCTTACGCGCTCACATCCTTCGGAAGCATGAGTCGCCCGAAATCGACTCCGACGTCAAAGAAAATATAGATGACAAAGATAAAAAAGTAATACACTTGGAACAGTATTCGAGTGAAATCACAGAGTCCGAAGAAGTTATAGAAAATGAGGAAGTTGTGGTGTTTGATTCTGCAAAAATTGCCTGTGCTTCCGAGGACGAAGTAGAGGAGGAAGAGGGTGAGATCGTTGATACGACGGAGGCTGATTCTCCAAGAAAATCCCAAAAGTGTCCGCTTTGTCCATTTGAAACTTGGATAAATTCAACTATGCAGTCACATATATCACGCTGTCACCAGAGCGAATTCTCATTCCCTAACGCAACCAAACAGCGCGTTCTTCAATTGCCACCAAGGACGAATGCTCGGAGGTTACCCAATGCTCAGTTGTACACAGGTTACGCGTGTCATTACTGCACATTCGTCGCGGCCACCGTAGCTAGCATCAATTCGCACACGGCCCGAGAGCATCAGGGCCAGAAGCAGCCTATAAAAGAAGTTCCGGTCACCGAATACGATTGCGACCAATGCGATTACAAGTCCAGAAATCGCCGTAACATGCAGCTCCACGTAAAGCGTTGTCACACTGCCCAAGCTAATGCGGAGGGTATGTTCGCCTGTCATGCGTGTTCTTACGAGACTCTGTCGCGCATGGGTCTGAAGAGGCACATATCCATCAAACACAACAAGCCACGGAGGGACGGAGGTACGAAAGAAAAATACGAATGCGATGAGTGCGATTTTAAATGTCTTAATGGTAAAACGATGGACTGGCATAAGAGACAGCACAATGCACCACCAAATGCCGAAGATGACGGTAACAGCTATTTCTGCAATGACTGCGATTTCTCCACATGGACAAAAGGACAGTTGTATTTGCATATAAAGCGAAAGCACAGAGATGCAGAGGGAAATAGCAGGGAACCTGAATCCGAGCCGGTGGAGCACGTGTTTGCCTGCGAACAATGTGACTATACAAGCAAGAACAAGCATGTGATGAAAGTACACGTGATACGAAAGCACACGAATGATTACAATCACGAATGTGAAATATGCGGCAAGAAATATAAAATAAAGGCTGACCTCACGAATCACATACGGTTTCAGCATCGAGAGCAACCGATCATTTGCGATGTGTGCGGCAAGACTTGTAGAAATAGTAACTTATTGTACCTGCATCAGAAGTTCGCACATTACAAGCCCGAGTTCGAATGCCCGATATGTCACAGAAGGATGGTGAGTCAAGCTAACTTGGACGACCATATACTCAAGCAACACGAACAGCGAGAGGACGCTGTTTGCGAGGAGTGCGGCAAGAAGTTCACGAAACAAGCTAGATTGAAGATACACATGAGGATACACACGGGCATTAAACCCTACACGTGTAAAGTATGTCTAAAAGCTTTTGCCAGAAGAAATGGGCTCAGACAGCATCTGCTGATTCACACGGGCCAGAGGCCTTATATTTGTGACATTTGTGGCAAGAGTTTTACTCAGAAAACAGGCTTGATATGCCATAGAAAGAGCCATCCTGGATTACATCCACCGTTGCCAAGAGTTACAATTGATCACGTGTTGTCGGATCTGTTGAACGAAGAATGTTAA
- Protein Sequence
- MVYNSVIKLTLTKQFSFVFRIQLRGGHRLVFQKKLVKIKPWQVIESWDNLIGASSSQMIHVKTEPSEVVSNDFEEVSIDGSDTIGEIATRLPKVNNEVIVYMCSICKLYFPLKRMLDEHKSVHANTNKEQKLTEGQRIFYAGYHKVKSGQYVCNYCPFRSFVRTTVSSHTARKHASLVQNNTDFEVSQGKLEANQKSVFKVEIFEDDDEDSWPMEVVEELEENKSEMEEIVTSKIRICPYCSFHTCNSSTFHSHIKRKHRESWLKSIEKNVVPLETITKLDINVFKCQRCQFVTPKRAILRAHILRKHESPEIDSDVKENIDDKDKKVIHLEQYSSEITESEEVIENEEVVVFDSAKIACASEDEVEEEEGEIVDTTEADSPRKSQKCPLCPFETWINSTMQSHISRCHQSEFSFPNATKQRVLQLPPRTNARRLPNAQLYTGYACHYCTFVAATVASINSHTAREHQGQKQPIKEVPVTEYDCDQCDYKSRNRRNMQLHVKRCHTAQANAEGMFACHACSYETLSRMGLKRHISIKHNKPRRDGGTKEKYECDECDFKCLNGKTMDWHKRQHNAPPNAEDDGNSYFCNDCDFSTWTKGQLYLHIKRKHRDAEGNSREPESEPVEHVFACEQCDYTSKNKHVMKVHVIRKHTNDYNHECEICGKKYKIKADLTNHIRFQHREQPIICDVCGKTCRNSNLLYLHQKFAHYKPEFECPICHRRMVSQANLDDHILKQHEQREDAVCEECGKKFTKQARLKIHMRIHTGIKPYTCKVCLKAFARRNGLRQHLLIHTGQRPYICDICGKSFTQKTGLICHRKSHPGLHPPLPRVTIDHVLSDLLNEEC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -