Basic Information

Insect: Platyscapa corneri
Gene Symbol: -
Assembly: GCA_018907185.1
Location: JACCHW010000082.1:494083-496134[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0039 1.3 11.3 2.0 1 23 277 300 277 300 0.96

2 10 3.7e-06 0.0012 20.8 0.7 1 23 306 328 306 328 0.99

3 10 6.3e-08 2.1e-05 26.4 0.4 1 23 334 356 334 356 0.99

4 10 0.028 9.3 8.7 0.7 1 23 362 384 362 384 0.98

5 10 4.2e-06 0.0014 20.7 0.2 1 20 390 409 390 410 0.96

6 10 0.35 1.2e+02 5.2 2.4 3 23 421 439 419 439 0.90

7 10 1e-06 0.00034 22.6 0.5 3 23 447 467 446 467 0.98

8 10 0.0001 0.034 16.3 1.4 1 23 473 495 473 495 0.98

9 10 0.002 0.66 12.3 2.6 1 21 501 521 501 524 0.96

10 10 0.13 44 6.5 2.1 1 20 530 549 530 551 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0039	1.3	11.3	2.0	1	23	277	300	277	300	0.96
2	10	3.7e-06	0.0012	20.8	0.7	1	23	306	328	306	328	0.99
3	10	6.3e-08	2.1e-05	26.4	0.4	1	23	334	356	334	356	0.99
4	10	0.028	9.3	8.7	0.7	1	23	362	384	362	384	0.98
5	10	4.2e-06	0.0014	20.7	0.2	1	20	390	409	390	410	0.96
6	10	0.35	1.2e+02	5.2	2.4	3	23	421	439	419	439	0.90
7	10	1e-06	0.00034	22.6	0.5	3	23	447	467	446	467	0.98
8	10	0.0001	0.034	16.3	1.4	1	23	473	495	473	495	0.98
9	10	0.002	0.66	12.3	2.6	1	21	501	521	501	524	0.96
10	10	0.13	44	6.5	2.1	1	20	530	549	530	551	0.93

Sequence Information

Coding Sequence: ATGACAAATTCAAAGCAGACAATCTTTGAATCAACAAATGATCTCGTTCAAGAAGAAATTCAATTTACAGAATTGAAACCAGTTGAACAATCGCGAATTAAAGAAACAGTTGATGATAAGGATATTAACGCCACAGATGGTCTCAAAGCTTTAAGAAGTTTTTCAAATCGAGAGGCTGATGAATTCGAATTTGGTTATATAAGAAAACAAAAAGTTGATAAATGGAAGCTTTTAAACAGTATAAACGAATTAAAATCTGAAGATGAAGACGTTGTTAAAAAAGTAAAAAGTTTTGGATGCAATGATGGAGGAAGCAAATCAAAAGTTGAGGACTATGTACAAAGTGATGATGATTTGGATGAAAATGAAGAAGAATTTTATGGCGTCAACGGAGACTTTGAATACTTGGAAGATAAGAATGATGAAGAAATTTATGTATATCGTCATCGAGATTCGTGCTTTAGTCCAAAACTTGAAAATACTAAGAAAAATATTGAAGAAAGCGTTATAATGAAAAAAATTTCAAAAAACAGAAAAATTAAAAATTCACGTAGAAGTAAATTTCAAACAGATGCGAGTACTCGGCCTAGGGGAAGACCTAAAAAAAATTTAAATAAAATAGATACGCTACCAAAAACCAAAGAACCCGAACCTAACATAAAATTCCTTGAACAATCGGAAAAAGAACTTCAAAATAAAATTAATGATATTATTCAAGCAACTTACCTCATGGAACAGGAGAATAATAATATTGTAGACAATAGTCATATTAATATTCAAAAAAACGATCTAGATAAAGATAAACATATCGAGGATCAACCAAAAAAGTATTGCTGTCTTATGTGTAAGGCTCGCTTCAAGGGTAGTGGTGGTTTACGCAATCATTATAAAGTCATGCATGCTACTGGTCCTTTTTTCAAATGTAATGAGTGCGGAAAAGAGTTTCCTTTAAAAGAACGACTCAAACTTCATGTGCGTACACATACCGGCTTTAAGCCTTATAAATGCCCAGATTGCGATAAAAGCTTTGCTAGAGGAGGCCAATTAGTACAACATCGTCGCACTCATAATCAAATTAAACCATATAGCTGTGATCTTTGCTCTGGAACATTCACTTGTGCCGCAAATCTAGCATTACATGTGAAACGTCATAATGGTCAAAAAGATCACAAATGTGATATTTGTGGCAGAGGTTTTGTTCGTCGTGATGCCTTAAAGAAACACCTAGAATGTCTGCATAGAGATGTCAAATCCTTTCTTTGTATTATTTGTAATAAAACATTTAAAGGTCATTTACCTCAACATATGCGAACCCATGCTAAAGATAGACCACATGGTTGTGCTACTTGCGGTCAACGTTTTGCTCAAAAAAGTCAACTAACTGTTCATCAAAGGACTCATTCCGGACAAAGACCTTTTAGATGTCTCGTATGTTGGCAGGCTTTTGCTCATTCTACTGCTTTAAAATTGCACACCAGAAGGCATACAGGAGAAAGACCTTTTAAATGTGCCGAGTGTAATGCTGGATTCACACAGCTTCCTCACTGGAAAAAACACATGAAATGTATTCATGGTAGAAACGAACCATATTGTTGTCGAAAATGTAATAATTTTTTCAGAATCAAAAATGATTTGGAAGCTCACGAGAAAGATTGTCCGGTTGAATGTAATATCGATTCGACTAGTTCAGATCCTGGAAATTCAAGAGATGGAAATGATGGTATATCAACTAGTGCGATGACTAGGTACAGAAATATGTCAATTGAAAAGATGAGATTATTATTAGCTGTATTATTAAAAAGGATTTCAAAACCTGAAAGGCTGGATGAATTGGGTTTCGGCAAAAGACTCATTGATGAAGTTCTTGTAGAATCTTTAATTTCTGCTGGTAAAGAGGCTATTAAAGCCAATGAAATAATATCAGAGTTTGAGGCATTAAGGAAAAATCTTTTGGTTTTCTTACAATGGACAGTACCAAAAGAGCACTGGGATAATTTTCGAAAATTAAAAAAAACACCAGAAGAAGTGCTTGAAACTCTCACAGCTACGTAA
Protein Sequence: MTNSKQTIFESTNDLVQEEIQFTELKPVEQSRIKETVDDKDINATDGLKALRSFSNREADEFEFGYIRKQKVDKWKLLNSINELKSEDEDVVKKVKSFGCNDGGSKSKVEDYVQSDDDLDENEEEFYGVNGDFEYLEDKNDEEIYVYRHRDSCFSPKLENTKKNIEESVIMKKISKNRKIKNSRRSKFQTDASTRPRGRPKKNLNKIDTLPKTKEPEPNIKFLEQSEKELQNKINDIIQATYLMEQENNNIVDNSHINIQKNDLDKDKHIEDQPKKYCCLMCKARFKGSGGLRNHYKVMHATGPFFKCNECGKEFPLKERLKLHVRTHTGFKPYKCPDCDKSFARGGQLVQHRRTHNQIKPYSCDLCSGTFTCAANLALHVKRHNGQKDHKCDICGRGFVRRDALKKHLECLHRDVKSFLCIICNKTFKGHLPQHMRTHAKDRPHGCATCGQRFAQKSQLTVHQRTHSGQRPFRCLVCWQAFAHSTALKLHTRRHTGERPFKCAECNAGFTQLPHWKKHMKCIHGRNEPYCCRKCNNFFRIKNDLEAHEKDCPVECNIDSTSSDPGNSRDGNDGISTSAMTRYRNMSIEKMRLLLAVLLKRISKPERLDELGFGKRLIDEVLVESLISAGKEAIKANEIISEFEALRKNLLVFLQWTVPKEHWDNFRKLKKTPEEVLETLTAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01524207;
90% Identity: -
80% Identity: -