Pcor014297.1
Basic Information
- Insect
- Platyscapa corneri
- Gene Symbol
- -
- Assembly
- GCA_018907185.1
- Location
- JACCHW010000051.1:618963-623712[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.011 3.8 9.9 0.3 6 21 12 27 6 28 0.86 2 14 0.91 3e+02 3.9 0.0 2 20 34 52 33 53 0.92 3 14 2.2 7.3e+02 2.7 0.6 1 12 234 245 234 254 0.80 4 14 0.013 4.3 9.7 0.9 1 21 377 397 377 398 0.96 5 14 2.7e-06 0.00092 21.2 0.8 2 23 403 424 403 424 0.98 6 14 0.0055 1.9 10.8 1.5 1 23 435 457 435 457 0.95 7 14 0.2 68 5.9 0.1 1 23 476 497 476 497 0.77 8 14 0.001 0.34 13.2 0.1 2 23 503 524 502 524 0.95 9 14 3.9e-05 0.013 17.6 4.8 1 23 582 604 582 604 0.99 10 14 4.8e-06 0.0016 20.5 5.0 1 23 610 632 610 632 0.98 11 14 0.0001 0.035 16.3 4.6 1 23 638 660 638 660 0.98 12 14 1.2e-06 0.0004 22.4 0.8 1 23 666 688 666 688 0.98 13 14 7.5e-05 0.025 16.7 0.2 1 23 692 714 692 714 0.99 14 14 0.00028 0.095 14.9 0.1 1 23 722 744 722 744 0.97
Sequence Information
- Coding Sequence
- ATGGGTTCAATAAACCTAATATGCCCTATGTGTTGCGGAGAGACTTTCAACAATTCTGAGTCTCTTAAGTATCACTTATTAAGTATGACTGATAATCTGTATTGCCCTGGTTGTTCAATAAGGACTTACTCAGTTGCTGCATTGATTCAACACTTAGACTGTTGTGGAAAAGAAATAGAAATTGAAGAGCAAAAGCATACACAGTTAAACTGTAATGAATTAGAGGTTGAACATAATGATAATGAAGAACCAGATATTTTAATGGATGAAAATGATGATACTATTAATGAAAGTTTTTTAGCAACTGTAAACGAAGATGGAATAATGATTGTTGGTGAAGGTAGAACAATTCAAGTAGACGAAAATGGTGATATTCAAGTGTTAGAAAAAATAAATTCAATAAACAAGGAAGAACCTATATCTCTTGTAAATTGTGAAAAAGATATAACTAATACAGAGGAAGAAATTCAAATTTCTGAATCATGTAATTTATTGCAAGATAATAATTCAATACAAACTATAAATAAAGAAAATTCCGTGACAAGTGTAGCTGATGCTTCTGAACTATTAGTTGAAGATGAAAGTACTTTAATTAGTATGACACAAGTTGATGGTCTACAATTTGATGATTGCGGTATCCTTAAAATAAAAAAAAAATTTGATGAAACATTAGAAAAAGAGCAGGAAACGGATATAATGTACAGTTGTAGTACTTGTAGTGTGAGTTTTAATTCTGTATTAGAACATATAAAAAAATATCATGATGGACAAGAAGTTGTATTAGAAATGGCAGAACAACAAATAGATGAAATACAATCAACAAGAACAGAAACAACACCTATATCTCCTGTCATTACAAATACATCAATGGAGTCAACAAATGATATTGATAATACAACTTCTGTTCCATTAAAACAAAGACAGTTAATGAATACATTAAGAACTGAAAAATGTATCGATAGTGAGGGAAAAATGTATACAAAAAAAGTTGTACAAATTGAAAGATTTTGGGATCGAACTCCAATTACTTTGTCTTCAACAAAAGCTCCAATGATTGAAAAATTTTTTTCCAATGTTGAAGGAGTTAAGGTTAGGGATAAAAGTGTCACGGTTGCTCCGACACGAATGTACAGATGTAATCAGTGTTTGGAACAATTTCCAAAATTAGGAGATTTTCGAGTACACATGTGCCTTCAAGGAAACAATCGATGTGATCAATGTGATCAAACATTTGTAACGAGTAAGGCGCTACAAAGCCATATGAAAGTGCATGAAAACAATGACTTTCCATCTCAGAAAATATTTTTATGTCCTGTATGTGGGACCGAATTTTTAACACATAAAAGTCTTCGACTGCATTCGAGAATGCATGCCCCTGTTCGAGCGCGTCACGTTGAGGCACCCGAAGGAACTGAAGAAGAAACTTTTGTATGCAACGAATGTGGCACTACCCTTTCGGAGTCGTACAGGGGCGCACATATGGCTCTCCATGCCGGCGATACAATCACGTGCTCCGTGTGCAATCGCAAGTTCGACTCGGCTGAAAGTCTGTCGATGCACGCGGCCGTCCACACGGAGCTAATCGCAGGTTCACCAGGAGGTTCCGCAGGGGTTGATTTGAACATCAACGCGTCCCATAATATGAGTGATTCAGCGTACATGAATTCGGGCGGGTCAGTGTCCGCAAACGCCAACATTGGCGCCACAGCGATGAACACGGCCGAGGTCCAGAGTCAGAAACCCTACCAATGCCAACACTGCGGTCGCAGATTCACGAGGCCTCACGAAAAAGTCAAACACGAGAGGATACATACGGGAGAAAAACCACATTCTTGTGAAGTCTGCGGCAAGAAGTTCCGGGTCTCGTACTGCCTCACTCTGCACATGCGCACGCACACGGGAGTGCGTCCGTACGAGTGCCAACACTGCGGGAAGCGCTTCAAGGCCTCCTCCGTCTACAATCACCACCTGCTGACGCACGGCGAAGAGCGCGCCTACACCTGCCCCTACTGCCCCAAGACCTTCAAGACCCGGGTACAGCTGGCCGGCCACAAGAACAGCCATACCAAACCCTTCCGGTGCACCGAGTGCTCGCGGCCCTTCGCATCCCTCTACGCAGCACGGGCCCACATACAGACCCACAAGAAGGACAACAATCTCAAGTTCAGCTGCAACGTCTGTGGGGCCTCGTACGGACGTGCGTTTGCCCTCAAGGACCACGTGAAGCAGCACGAGCGCGAGAGCGTGGCCATCCCTCCGGAGCCCGCGCGCGAAGAAGAGGTCCAGGAGGCTGACAGCTTCCTCATGCACGAGAACGATGATGAGCCCGAGGACGAAGATCCCCTTATGTTGCCCCCGCCTTTGGTCTCTACCCCGACTCAGGCCTTGCACGAGGGATGA
- Protein Sequence
- MGSINLICPMCCGETFNNSESLKYHLLSMTDNLYCPGCSIRTYSVAALIQHLDCCGKEIEIEEQKHTQLNCNELEVEHNDNEEPDILMDENDDTINESFLATVNEDGIMIVGEGRTIQVDENGDIQVLEKINSINKEEPISLVNCEKDITNTEEEIQISESCNLLQDNNSIQTINKENSVTSVADASELLVEDESTLISMTQVDGLQFDDCGILKIKKKFDETLEKEQETDIMYSCSTCSVSFNSVLEHIKKYHDGQEVVLEMAEQQIDEIQSTRTETTPISPVITNTSMESTNDIDNTTSVPLKQRQLMNTLRTEKCIDSEGKMYTKKVVQIERFWDRTPITLSSTKAPMIEKFFSNVEGVKVRDKSVTVAPTRMYRCNQCLEQFPKLGDFRVHMCLQGNNRCDQCDQTFVTSKALQSHMKVHENNDFPSQKIFLCPVCGTEFLTHKSLRLHSRMHAPVRARHVEAPEGTEEETFVCNECGTTLSESYRGAHMALHAGDTITCSVCNRKFDSAESLSMHAAVHTELIAGSPGGSAGVDLNINASHNMSDSAYMNSGGSVSANANIGATAMNTAEVQSQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHSCEVCGKKFRVSYCLTLHMRTHTGVRPYECQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCNVCGASYGRAFALKDHVKQHERESVAIPPEPAREEEVQEADSFLMHENDDEPEDEDPLMLPPPLVSTPTQALHEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00304593;
- 90% Identity
- -
- 80% Identity
- -