Pcor045977.1
Basic Information
- Insect
- Platyscapa corneri
- Gene Symbol
- -
- Assembly
- GCA_018907185.1
- Location
- JACCHW010000004.1:5585190-5592090[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.026 8.7 8.7 1.7 1 23 304 326 304 326 0.93 2 13 8.9e-05 0.03 16.5 1.1 1 23 331 355 331 355 0.94 3 13 5.1e-05 0.017 17.3 3.4 1 23 444 467 444 467 0.97 4 13 8.2e-05 0.028 16.6 0.1 1 23 473 496 473 496 0.94 5 13 0.0011 0.35 13.1 0.3 1 23 505 528 505 528 0.95 6 13 1.9e-07 6.5e-05 24.9 3.6 1 23 534 556 534 556 0.98 7 13 4.6e-06 0.0015 20.5 1.0 1 23 562 584 562 584 0.98 8 13 0.0026 0.87 11.9 7.9 1 23 590 612 590 612 0.96 9 13 9.5e-09 3.2e-06 29.0 0.7 1 23 618 640 618 640 0.99 10 13 3.3e-05 0.011 17.8 7.6 1 23 646 668 646 668 0.98 11 13 9.3 3.1e+03 0.7 5.3 2 23 675 696 674 696 0.95 12 13 2.1e-05 0.0071 18.5 0.8 1 23 702 724 702 724 0.98 13 13 3.2e-07 0.00011 24.2 1.5 1 23 730 752 730 752 0.98
Sequence Information
- Coding Sequence
- ATGGCGAAGATTCGTTTATACGACTCGACAACTTGCCGTTTGTGTGCAGAAAACAACGACAAAGGCGAAATGTTATTTACCGATGACTCGGAAGAAACAGAATTAAGTGTGATGATTAACCGCTATTTGCCTCTTAAGGTTCACGATGATGGTAACTTACCTCGTACCATATGTCCTGGATGCAATATTCAGTTGGAAGCAACAGTACAATTTTTTGAGTTGCTTATTAATGGTCAACGTAAAATTCAAGAAATGTGGAAGCAACAAATTGAATTTGAACGTAGAATTGAAAGAAATCACCTTAAAAAAAAGAGTATAAACATAACATTAGATAATTCTGAATTATTTACTGCTGAGGATGAAAATTCAATTTCAGAATCTAATCAACAACAAATTATTATTAATGTAATGCCAGATGGATCTGTTTATGCTGCTGAACATGATTTAAGTTTACAAATGCAAGGCCTAAATAAACCTAAAAGAAAAAGAGGTCGTCCACCAAAACCTTCATCAGAAGAAGAATTAAAAGAAATTGAAAAGGATGAATGTGTTGAAGAAATAAGTCAAGAAGAAGAAGATAAACAAGATGAAGACGAATTTGATAAAGATGGAAGACGGAGAAGAAAACGTAAAGTTCCTAAAAGGTATATGGAAACAGTTCAAGGAAAAGAATTGGAAAAAATGTTTAAAGAAGAAGGTGTTTTTGATGATGATGAGATACAAATAAAATATGAAGCAAATGAAAATTTAATTATTTCAAGTGCAGATAGTAGCAATAGTGACACAGAAATTATCGGCCATTTAGAAACTATAGAAGGAAAAAATTTAGGTGAATTAGTTGTTGTTAATAGAAATAAAATCCGTTCAAAATCAAAAATGCGAAAATCAAAACTAAAAAGAAAACATAAATTTATTTGTTCCTATTGTGATAAAGGATTTTTACAACGAAGTAAATATATTATTCATAAAAGCTTTCATAAAATAATAAAATATGAATGTACAGAATGTCAAAATCAATTTTCGAATAAAAATAATTTAGTTTTACATCAAAAAACGTTAAGCCACAATGGAGAAAAAATAATCGAAATTAATGACGAAGAAAAGAATATCAAGAATGATTGTAACAAATCTATTAGTTTAGAATTAGTAAATACAGTTGAACCATCTATTACTACAACAACTTCTTTAACAGCTTTACCTAATGATATTAAATCTTTAAATACTGAAGAAAATAATGAATTAAAAGACATAAGAAGTGAAAATCAAGAGGAAACAAGTAGGGAAGAAGAATCGTCTCGAGATTCTGAATCCAAAGAAAGTGATAACATATTTAAATGTGAAAAATGTAGTAAACACTTTCAGTCAAAAAATAATTTAGAAACCCATGTAAAAGTTGTGCATCAAGGAGAAAAACCGTTTATATGTGATATATGTAGCAAAGCATTTGCTTATCAATCAAGTTTGAAAGGACACAAGGAAATAGTTCATCAGAATAATAAGTCAGATAAGGGTTTTCCATGTGACATATGTGGAAAAGTTCTGAATCATCCAAGTTCAATAATGTATCATAAATTAAGTGAACATAACAATGGCCGTCGCTTTGTATGTAACAAATGTGGCAAAAGTTTTAAGCACAAACAGTTATTACAGCGACATCAACTTGTTCATTCGGAACACAGGCCATATCCATGTAAATCTTGCAATGCTTCCTTCAAAACAAAAGCAAATTTATTAAATCATCAATCAACTCATACTGGAGAAAAAAAACATTTTTGTGAACTCTGTGACCACAAATTCGCTCATAAAACAAGTCTTACCTTACATTACAGAACACATACAGGTCAAAAACCATACAAATGTGAAGTATGTTCAAAAAGTTTTTCTCAAAATGGTAATTTACAAGAACATATGCGCATTCATACAGGTGAAAAACCATACTGCTGCGATCACTGCGGACGTAAATTTACAACGTCATCGCAATTTAAGTTGCACGTTAAACGGCATACGGGTGAAAGACCGTGGAAATGTGAATTTTGTGCAAAATCATTCTTGCACAAAGATACATGGAAGTGCCATGTTCGTAGACACACAGGAGAACGTCCATTTCAGTGTGCATACTGTAGTCGCGACTTTACAGAGCAATGGGCGCTAAAAAAACATTTGCGACTTCATACAGGGGAAAAACCATATAATTGTGAAGTTTGTGGGAAAGCATTTGCTGATTGTTCAAATTTAACAAAACATAAAAAGGTGCATAAAAATTCAGTAGTAGATTCTAATAATTTAGCAGAAGGACCTACTATTGGAGAGGTTTGGCAAATTTTACCAAATTCTCAGGAAGAAAATATAAATACCCTTAATAATTTAACTCAAGTTATGACAGCAGACGAAATTTCTGAAGATGATATGTCACAAATTATTTATGTGGCTTATCAAGACCCAAACCACTCGGTTGAATCATCTACATTACAACTGGGTAAAGAAAGTATTATGGCCAATCAAGATTCAAATGTAAATACAACAATAAATAATGAAGTTTCAAATAATATGGAACTTACAACTGAATCCGACTTACAACTTCAAATAACAGATGAAGATGGTAATGCAATACCATTATCACTACAAGATGCACGTCAATTATTTTCTGAAGGGCAGTTCGTTAGTCAATTAAATGGAAATCAAACAATAAGAGTCCAAAATTTACCAGCATCATTAGGGTTAACATCAGATATTGAGATTACATCACTTTCTACAAAAGAAAATGAAGAATCAAAAATGTCTTTAGCATCAACGATTCAAACAGATGCTGAAGCTATAGTGAAAGTTTTAGAAGACGAAGACACCGATGCAACAGCTGTTGCAGCCATTAATCAAATGAATGCAGAAGATCGTTTAGAATTAGCGGATGGTCAACAAGCTATAGAATTTATTACTCAAGATGGACAAAAAGTACGATTAGTGACTTCTTTGAATATAGATCCCTTACAATTAGCCTCCGAGTACCTGACTATAGTTTAA
- Protein Sequence
- MAKIRLYDSTTCRLCAENNDKGEMLFTDDSEETELSVMINRYLPLKVHDDGNLPRTICPGCNIQLEATVQFFELLINGQRKIQEMWKQQIEFERRIERNHLKKKSINITLDNSELFTAEDENSISESNQQQIIINVMPDGSVYAAEHDLSLQMQGLNKPKRKRGRPPKPSSEEELKEIEKDECVEEISQEEEDKQDEDEFDKDGRRRRKRKVPKRYMETVQGKELEKMFKEEGVFDDDEIQIKYEANENLIISSADSSNSDTEIIGHLETIEGKNLGELVVVNRNKIRSKSKMRKSKLKRKHKFICSYCDKGFLQRSKYIIHKSFHKIIKYECTECQNQFSNKNNLVLHQKTLSHNGEKIIEINDEEKNIKNDCNKSISLELVNTVEPSITTTTSLTALPNDIKSLNTEENNELKDIRSENQEETSREEESSRDSESKESDNIFKCEKCSKHFQSKNNLETHVKVVHQGEKPFICDICSKAFAYQSSLKGHKEIVHQNNKSDKGFPCDICGKVLNHPSSIMYHKLSEHNNGRRFVCNKCGKSFKHKQLLQRHQLVHSEHRPYPCKSCNASFKTKANLLNHQSTHTGEKKHFCELCDHKFAHKTSLTLHYRTHTGQKPYKCEVCSKSFSQNGNLQEHMRIHTGEKPYCCDHCGRKFTTSSQFKLHVKRHTGERPWKCEFCAKSFLHKDTWKCHVRRHTGERPFQCAYCSRDFTEQWALKKHLRLHTGEKPYNCEVCGKAFADCSNLTKHKKVHKNSVVDSNNLAEGPTIGEVWQILPNSQEENINTLNNLTQVMTADEISEDDMSQIIYVAYQDPNHSVESSTLQLGKESIMANQDSNVNTTINNEVSNNMELTTESDLQLQITDEDGNAIPLSLQDARQLFSEGQFVSQLNGNQTIRVQNLPASLGLTSDIEITSLSTKENEESKMSLASTIQTDAEAIVKVLEDEDTDATAVAAINQMNAEDRLELADGQQAIEFITQDGQKVRLVTSLNIDPLQLASEYLTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01524174;
- 90% Identity
- -
- 80% Identity
- -