Pcor000964.1
Basic Information
- Insect
- Platyscapa corneri
- Gene Symbol
- -
- Assembly
- GCA_018907185.1
- Location
- JACCHW010000003.1:20353-26515[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 4.6e-06 0.0016 20.5 0.2 3 23 329 349 327 349 0.96 2 23 1.9e-06 0.00063 21.8 2.9 1 23 355 378 355 378 0.96 3 23 5.6e-05 0.019 17.1 2.5 1 23 384 406 384 406 0.98 4 23 8.3e-06 0.0028 19.7 1.1 1 23 412 434 412 434 0.98 5 23 0.018 5.9 9.3 6.9 1 23 440 462 440 462 0.96 6 23 5e-05 0.017 17.3 1.7 1 23 468 490 468 490 0.98 7 23 0.011 3.6 10.0 1.7 1 21 496 516 496 516 0.96 8 23 4.3e-05 0.014 17.5 1.7 1 23 603 625 603 625 0.99 9 23 2.9e-07 9.7e-05 24.3 0.7 1 23 631 654 631 654 0.96 10 23 0.075 25 7.3 0.6 1 23 660 682 660 682 0.98 11 23 4.6e-05 0.015 17.4 4.6 1 23 688 710 688 710 0.96 12 23 1.1e-05 0.0037 19.3 1.0 1 23 716 738 716 738 0.98 13 23 1.2e-05 0.0042 19.2 0.6 3 23 746 766 744 766 0.98 14 23 0.00036 0.12 14.6 0.8 1 21 772 792 772 793 0.92 15 23 0.00014 0.048 15.8 0.1 1 23 810 833 810 833 0.97 16 23 5e-07 0.00017 23.6 2.9 1 23 847 869 847 869 0.99 17 23 0.007 2.4 10.5 3.6 1 23 893 915 893 915 0.99 18 23 2.7e-05 0.009 18.1 0.2 3 23 923 944 921 944 0.91 19 23 0.016 5.4 9.4 0.1 1 23 950 972 950 972 0.96 20 23 5.2e-05 0.018 17.2 0.9 1 23 978 1000 978 1000 0.98 21 23 0.00012 0.04 16.1 0.9 1 23 1006 1028 1006 1028 0.96 22 23 0.007 2.4 10.5 0.0 1 23 1034 1056 1034 1056 0.97 23 23 0.00034 0.11 14.7 4.6 1 23 1062 1084 1062 1085 0.93
Sequence Information
- Coding Sequence
- ATGGAGTCGGTTCATTCGAATACTGTAGGACTTGTGATAAAAACTATTAATAGTGAAGACATAGTAATCGAAGAAGCAAAAGAGATTGTTCACGATAAAAATGAAGAACAACTCGAAACAACAGAATACTTTTTAGATGTTGAAGAAGAACCTACAGAAGAAAATAATGATACACAATTTGTACCTGTGGATGATGACCACGAAGAAGGTCAATTTGTAGCAATGGAAGTTGAAGATTCAGATCGAATAATTTTGCATGATAAAGATGTGATAATGTGGAATAAACTATGTAGGATTTGTGCAAATGATAGTGATCGCCTAATTCCAATATTTAATGGCGAAGGAATAGAACACAATTTATGCAATAAAATTCATAGTTACTTACCTTTAAGGGTATCAGAAACTGATAGTCTTCCAACACACGTTTGTTATAATTGCGCAGCAACTTTATTGGCATGGCATGAAATGACCAAAGGATGTATAGAAGCTCAACAACGTCTGATAGATTTGCAAAATAAATTTGATTTAAAAGATCAGTACTACAATGGATCAACAGTAGATCAAGAAGATATTCAAACAATATTAGAAGTAGAAGAAACTAATGATGAAATACCACAGATTCAATCAAGATGTGAAAATAATGTAGAAACAGTGAACAACATTGATATTTCAGAATCAGACAGGTCCAGAAGACTGCAGACATCATTTATAGAACCTCTTGATAGACAAATTAAAAATAAGGAGTCTATTAAAGAAACAAATACAATTCCGAACGAAAAGGTTGAAGGTAACTGCTGGATGACAGTAGTAGACTTCGCCAAATCTTCGCCACAATTTGCTGACTCGCCCAATTGCATTCTAAAAAGTGTGGATTCCGAAATTGCTGTAAATGAAACCAACATTGAGATGAGCAAATATTTAAAGAAGAAAAAATGTAAAAAGAAAGATTTCAGCAATCAGAAAAATTGCAGCATATCTCTTGCGTGTGGTGATTGTGGGAAATTATTTAAAGTAAAGGACTCATTGATGCGTCATTTGCGTATACATAGAAACGAGCGACCCTTCACTTGTCACGTGTGCGGAAAACAGTTTCGTGATTCAGGTGGTCTTTGTCGTCACCTCAGAGATGTTCACGCCAGATTGAAAAATCACACTTGTGAAATATGCGGCAAAAGCTTCGCCTCTAAAGCGACCAAAGAGGATCATCATCGAATTCACACCGGTGAAAGACCGTACATTTGCGATACGTGTGGCAAGGGCTTTAAATCTAAGGCATCACTTTATACCCACAGTAAGACTCATACTGATGATTTTCCTCATCCCTGTCTACATTGCGATAAAAAATTCCGCAGAAAACAGGAGCTCTTGTGCCATATTTCCATGCATACTGGCGAAAAAAATTTCGAATGCGACGTGTGTTTTAAAAGATTCAGACTGAAAACAGAACTCAGAAGGCATACCCTTGTTCATTCGGATAATAAACCATTCGTTTGTAATATTTGCGACTTCCGTTGTAGACAAGGACGATATCTGAATAATCATATCAAATGCGTGAAACTTGAAGATGACGATGTCAAACTCGAAGACGACGATGTAATCGCCATCCTAATGACGTCAACATCACCGAAGAGTCAAAAAAAGCGAAAATCAAAGGATCTCGTGAGTTCGGACGTAAAACAATCAAAGCCAGGAAGAAGAACGAAAAGGTCAAAAGGAGAGGCGGACGCTGACAGCAATGGGAATCATAACTTACAGCGTCGATTGGAGGTTGCTCGATCAAAAATCAGCGTCGACGGGGTGACGTACTACAAGTGCCGCAACTGCCCAAAAGTCCTGTCAACTTCGTATAACTACTTTGCGCATAAACGCATACATACGCGGGAGAAGCTCTTTACATGCGACATATGCAACAAAAGCTTCACCGTTACCTCATCGCTCACGCGCCACATTCGTGACGTCCACGAAAAAATCAAGGATTACAATTGCAGTTTCTGCGAACGCAGTCTCGCTTCAAAAATCGCTCGCGACGAGCACCAGCGGACTCACACGAATGAGCGACCGCACGTATGCGATACTTGTGGCAAAAGTTTTAGGCACCGGGCTTCGCTTTCCGTTCACAAAAGGTTTCATTCCAACAACTTTTCCTTTAGGTGTAAGCAGTGTGATAGGGCCTTTCCCCGCAAACAGGACATGGAAAGACACGAGCTCACACACACCGACCAAAAACCTTACGGCTGCAAAGTTTGCGGCAAGACGTTCAGGAGCTCAGCCTCAGCGATCAGACACAGGCAGACTCATGAAGTGTTTAGTATTCACATATGTGACGTATGTGGCGAGAGCTTCAATCAAGAAAGATATCTGAAAAGTCATAAAAATAAAGCTTCTTCGATAAGCAGCAAAGAAGACACGGTGGGCCAAAAATTCACATACATGTGTGGAATCTGCGGCGAGTTATACAGCAACGAGTTTGATCTCATCCGCCACTTGAATAAAGATCACGAGGAAATCACAAACCCGAACGGCTCGAATCCCTTCCGATACGAGTGCAATACTTGCAAAAAGTCGTATATGTACAAGAGTAACCTAATAAAACACATGCGGAGCCACGCAACAGAGACACCGAGTGAAGACGGAATCGTTGAGAAATCGAAAATCTTCGTTAACCATGTGCAATTGTTTAAATGCGAAATTTGCAAGAACACGATGACTCATCGACGTGCATTTCTACGCCACATTCGCATGCACGCCGATGAGCGTCCAGTTATCTGCCACGAGTGTGGCAAAGCCTTCAGGATAGAGGACGATCTGAAACGCCACATCGACGATGTCCACAAGAAGATAAAACGTTTTGCCTGCGACATCTGTGGCAACTCCTTCGCCGCAAAGGCAACACGGGATGCCCATAGGAGGATACATACCGGAGAGAAACCCTTTTCTTGTGAAATCTGTCAAAAGACCTTCCGATCGGTTAATCTCCTGGGCGTGCACAAGCGTACGCATACAAATTATCGTCCTCATCAATGCTCGTTCTGTGACAAAGCCTTCAGGGACCGGCAGAAACTCGCGGTGCACGAGGCCATTCACACTGGCGTCAGACCCTATCCTTGCGATGTCTGCGGCAAGTTGTTCGCGGCAAAGGGCGAGGCAGCCAGGCACCGCACCGTTCACTTCGAGGACAAGCCATTCTTGTGCTCCGAGTGTGGACTCTGTTTTCGACTTAATCGATACTTGCGTACCCACATTAAAATTCATCATAAAGAAAAAGCTGAGGATCTAATCAACGAACTAGATAATAAATAA
- Protein Sequence
- MESVHSNTVGLVIKTINSEDIVIEEAKEIVHDKNEEQLETTEYFLDVEEEPTEENNDTQFVPVDDDHEEGQFVAMEVEDSDRIILHDKDVIMWNKLCRICANDSDRLIPIFNGEGIEHNLCNKIHSYLPLRVSETDSLPTHVCYNCAATLLAWHEMTKGCIEAQQRLIDLQNKFDLKDQYYNGSTVDQEDIQTILEVEETNDEIPQIQSRCENNVETVNNIDISESDRSRRLQTSFIEPLDRQIKNKESIKETNTIPNEKVEGNCWMTVVDFAKSSPQFADSPNCILKSVDSEIAVNETNIEMSKYLKKKKCKKKDFSNQKNCSISLACGDCGKLFKVKDSLMRHLRIHRNERPFTCHVCGKQFRDSGGLCRHLRDVHARLKNHTCEICGKSFASKATKEDHHRIHTGERPYICDTCGKGFKSKASLYTHSKTHTDDFPHPCLHCDKKFRRKQELLCHISMHTGEKNFECDVCFKRFRLKTELRRHTLVHSDNKPFVCNICDFRCRQGRYLNNHIKCVKLEDDDVKLEDDDVIAILMTSTSPKSQKKRKSKDLVSSDVKQSKPGRRTKRSKGEADADSNGNHNLQRRLEVARSKISVDGVTYYKCRNCPKVLSTSYNYFAHKRIHTREKLFTCDICNKSFTVTSSLTRHIRDVHEKIKDYNCSFCERSLASKIARDEHQRTHTNERPHVCDTCGKSFRHRASLSVHKRFHSNNFSFRCKQCDRAFPRKQDMERHELTHTDQKPYGCKVCGKTFRSSASAIRHRQTHEVFSIHICDVCGESFNQERYLKSHKNKASSISSKEDTVGQKFTYMCGICGELYSNEFDLIRHLNKDHEEITNPNGSNPFRYECNTCKKSYMYKSNLIKHMRSHATETPSEDGIVEKSKIFVNHVQLFKCEICKNTMTHRRAFLRHIRMHADERPVICHECGKAFRIEDDLKRHIDDVHKKIKRFACDICGNSFAAKATRDAHRRIHTGEKPFSCEICQKTFRSVNLLGVHKRTHTNYRPHQCSFCDKAFRDRQKLAVHEAIHTGVRPYPCDVCGKLFAAKGEAARHRTVHFEDKPFLCSECGLCFRLNRYLRTHIKIHHKEKAEDLINELDNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -