Pcor051491.1
Basic Information
- Insect
- Platyscapa corneri
- Gene Symbol
- bab1
- Assembly
- GCA_018907185.1
- Location
- JACCHW010000011.1:2149910-2153781[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-18 2.5e-14 54.4 0.0 1 43 28 71 28 73 0.95 2 2 0.019 1.7e+02 3.7 0.5 6 19 152 165 147 166 0.89
Sequence Information
- Coding Sequence
- ATGTGGCAAAAGTGCTGGAACACCAATCAGAGTCTGGTGCACAATCTTCGCTTTCGAGAGCGCGGACCTTTGAAGTCCTGGCGGCCGGAAACGATGGCGGAAGCGATTTTTAGTGTACTCAAGGAGGGCCTCTCGCTGAGCCAGGCTGCAAGGAAATACGATATTCCATACCCGACGTTCGTACTTTACGCGAACCGAGTCCACAACATGCTGGGACCGAGCGCCGACGGTGGAGCCGGTAAGTATTTGCGGCCGAAGGGCCGAGGGAGGCCGCAGAGGATTCTGCTCGGCGTTTGGCCGGACGAGCACATCCGAGGCGTCATCCGAGCGGTGGTCTTCCGCGACGGACACTCGCCCCACATCGTCAAGGAGGAGCCGACCACCATGTACCCTGCCCTGGCGAATTACGGCGCCTGCAACGGACCCGAGGGAGCGGTCAGCCCCAGCGCAGCTGCCGCAGCAGTCGCGGCCGTCGCTCAAGGTACGTTGTCGCTCGTCGCGCCCTTCTCCCTTTGCCGAGGCGAGCGAGCATCCGATTACAACAGCCCTTACCCCGTCGCTGCTCCGCGTCCGGCCTTTCGCAACTGCTGGTGCGTGCGTTTGCCGCCCAGCTGCGCGCTCCAAGGACAAAGCAGCGGACCAACGGCTTTCCTCGATTTCGGAATTCGCCTTTTGTACCCGGGGCTCCAGTCGCGAGTCCAACGTCCAACCTCCGGAGTTTTCAACCCTCGAGCGGCTGGAGGGATTGGCCGGGGGTCAGATTGGCGCCGGTAA
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGAGKYLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGHSPHIVKEEPTTMYPALANYGACNGPEGAVSPSAAAAAVAAVAQGTLSLVAPFSLCRGERASDYNSPYPVAAPRPAFRNCWCVRLPPSCALQGQSSGPTAFLDFGIRLLYPGLQSRVQRPTSGVFNPRAAGGIGRGSDWRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -