Pcor033877.1
Basic Information
- Insect
- Platyscapa corneri
- Gene Symbol
- -
- Assembly
- GCA_018907185.1
- Location
- JACCHW010000024.1:3490193-3496807[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.9e-13 4.4e-09 37.7 0.0 1 39 371 410 371 414 0.90 2 4 3.9e-12 3.5e-08 34.8 0.0 2 39 426 463 425 466 0.94 3 4 5.5e-19 4.9e-15 56.7 0.0 2 45 481 525 480 525 0.97 4 4 6.2e-19 5.6e-15 56.5 0.1 1 42 532 574 532 575 0.97
Sequence Information
- Coding Sequence
- ATGTTCTGTCACACAGGCCTCGGTCACTACGCCCATCACCCGGACCCGGGGGAGGTCGACCTGCCGCCGGAGACGCAGCCAACGCCACCCAGCGCCACCCTCGTCGGCACCACCATCACTCATCTGCGGGATCCAGATCACCACACGGCAGCGCAAGAAAGTTCTACTCCTCGCTGTCTTCATGCGTCGTTCATAAACAGAAGCAAGATGCTTACAGCAGATTTTAAAATTAGCCGGACTGGCGGTTCGGCCGAGTGGAAGAGAAAATTTCGAAAACTTGAAAGTCGAGGGAAGCGCCGACGCTTCGAGAAAAACCCAATGCTTTTGACCTATTCAACTTGTACGTCGTTCGTTTCACAACCGACGGACGCGGAAAGCATTTCGAGTACCGGCGAATCGCGGAGTAGACCAGCAACGGGGCGAAAGGAAAAGGTCTCGGGCGATCGGACCAATCGCGCGCTGCTCTCTTTTATTCTCGCGCCGCACGGCGTCTGCGCTTTTCCCCTCCTATTACCTCACCTCCCTCTTCCGCGGCCCCTTCTTTCACCTGACCTCCGGCCGGCCGTCCATCTGCGCGTGCACGCGCCGCGACTGCGGAAGCCCGCCGAATTACCTGCAGTTGGCTGTAAATTGACGGCGCGTGGACGCACGGCCCGAGTCGCGGACAAATCGCTCCAATTACATCCAGCGGTTGTCGTTGGCAAAGGCCTCGGCGCCGAGGGGATGCCAAGGATGTCGCGCGCATTCGTAACTCAATCCATTGGAACGGCAGAACAGTCGCAATCACACACAAAGCCCTTCGACTATCAGCCGCGGACGTGTCTCACCTTCTGCTTTCCCTTTGCAGACATTCAAAGCTGCGACAGCGTGAAGATAAAATTTGAAACACTGCACACGATGGACTCGTCGGACACGATCGACATCGACAGTCACATGTCGGATCGGGCGAGCGTCAGCTCGAAGAACGCCGACGACAACATGATGATGATCACGCCGGAGTTGCTGGGCCTGATGCCCTCCGGAAGCTCCGTGCACTCGGACTCGGGGGAGAACAACTCCCGCAGTCATTCGGGCCAATCCGGCTCGCATCACCACGGCTCCAAGTCCTGGACACAGGAGGACATGGACGCGGCCTTGGAGGCCCTCAGGAATCATGACATGAGTCTCACCAAAGCTTCCGCGACGTTTGGCATACCGTCGACGACGCTGTGGCAGCGCGCGCACCGCCTGGGCATCGACACGCCGAAGAAGGACGGCCCGACCAAGTCCTGGAGCGACGAGAGCCTGAACAACGCCCTGGACGCGTTGCGCACGGGCACGATCTCGGCGAACAAGGCCTCCAAGGCCTTCGGCATACCCTCGAGCACCCTCTACAAGATCGCGAGGCGGGAAGGCATCAGGTTGGCGGCGCCCTTCAACGCGAGCCCGACGACCTGGTCGCCAGCGGACCTCGACAGAGCGCTGGAGGCCATCAGGTCCGGCCAGACCTCGGTGCAGCGCGCCTCCACCGAGTTTGGCATTCCCACGGGGACGCTCTACGGGCGCTGCAAAAGGGAAGGCATCGAGCTCAGCAGGAGCAATCCGACGCCTTGGAGCGAGGACGCCATGACCGAGGCTCTCGAAGCTGTCAGGTTGGGACACATGAGTATAAACCAAGCGGCGATCCACTACAATCTGCCCTACTCGTCGCTCTACGGTCGCTTCAAGCGCGGCAAGTACGAGGAGCCGGTCGTCAACGAGATGTCGCAGGACGGCTCGTCGCAACACTTTCACCAGAGCCCGACCCAGAACCACTCGTCCTCCCTTCCCGATCAAATGCCGTACCAGGGCAGCTGA
- Protein Sequence
- MFCHTGLGHYAHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHTAAQESSTPRCLHASFINRSKMLTADFKISRTGGSAEWKRKFRKLESRGKRRRFEKNPMLLTYSTCTSFVSQPTDAESISSTGESRSRPATGRKEKVSGDRTNRALLSFILAPHGVCAFPLLLPHLPLPRPLLSPDLRPAVHLRVHAPRLRKPAELPAVGCKLTARGRTARVADKSLQLHPAVVVGKGLGAEGMPRMSRAFVTQSIGTAEQSQSHTKPFDYQPRTCLTFCFPFADIQSCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNADDNMMMITPELLGLMPSGSSVHSDSGENNSRSHSGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNEMSQDGSSQHFHQSPTQNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -