Pcor042103.1
Basic Information
- Insect
- Platyscapa corneri
- Gene Symbol
- retn
- Assembly
- GCA_018907185.1
- Location
- JACCHW010000015.1:5237359-5238401[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-14 1.9e-10 42.7 0.0 17 80 50 111 46 111 0.92
Sequence Information
- Coding Sequence
- ATGGCGCTCTGTGTGCGATGGCAGCAGTATACTCACTGGCGCAATGCGAATCGCGTTTTACCGCGCGGCGTTACCGAGTCGATGCGCGAGGCGCGATCGGATCGCGATGGCAGGGTTGCAATTGCGCCTGTTGGAGCATCGACGATTAGCACACCGATCAACCGATTGCCGATTATGGCGAAATCAGTGCTCGACCTCTACGAGCTGTACAATTTGGTCATCGCCCGTGGCGGCCTCGTCGACGTCATCAACAAGAAGCTCTGGCAGGAAATCATCAAGGGCCTTCACCTCCCGTCGAGCATAACCTCCGCCGCCTTCACACTGCGCACCCACACGATTCCGCGAACTGTTTCACCTCCGCTCCCCTTTCCGCTCCCGTTCCAGGCCGGCTCCAGCTCACCCACCCTCGCCCACTCCCAACTCGGCTTTTCGATTTGCCAAAGTAGCACAGCCAATTACCTTAATGGCCAATTTTTCCGAGCCTCGCTCGCTATTGCACGCGAGATCGATTTTCAATTTCATCGGGTCGAGGCGAGCGGCGGGGCCTTTATGCCGCGCCGCCCCTCTTCCTCTTATTACCGTTTATTGCTATTATTCGTGCTCCCACCGGCTTTTCCTTTCCTCCTTCTTGCGTCCACTGTGGACTCGTGCTATTCGATCGCTTTCGCCTCGATTGCACCGGAACTGCGATCGGCCGCGACCGAGCTTTTGGCTTTCCACTCCGAATACTAG
- Protein Sequence
- MALCVRWQQYTHWRNANRVLPRGVTESMREARSDRDGRVAIAPVGASTISTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTHTIPRTVSPPLPFPLPFQAGSSSPTLAHSQLGFSICQSSTANYLNGQFFRASLAIAREIDFQFHRVEASGGAFMPRRPSSSYYRLLLLFVLPPAFPFLLLASTVDSCYSIAFASIAPELRSAATELLAFHSEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -