Pcyl010980.1
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- stc
- Assembly
- GCA_949748235.1
- Location
- OX456491.1:8536677-8540472[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.14 8e+02 0.2 0.1 8 13 212 217 211 218 0.80 2 14 2.8 1.6e+04 -4.0 1.6 15 19 320 324 319 324 0.81 3 14 1.5 8.5e+03 -3.1 0.2 4 10 352 358 352 358 0.87 4 14 0.011 62 3.7 20.2 3 18 366 381 365 382 0.93 5 14 1.9 1.1e+04 -3.5 0.7 5 10 407 412 407 412 0.92 6 14 1.7e-06 0.0096 15.9 12.6 1 19 418 436 418 436 0.98 7 14 5.8e-05 0.33 11.0 14.4 1 19 476 494 476 494 0.91 8 14 4.2e-05 0.24 11.4 14.4 1 19 534 551 534 551 0.99 9 14 1.3 7.6e+03 -3.0 2.7 5 10 579 584 579 584 0.95 10 14 0.00068 3.9 7.5 8.4 1 11 590 600 590 601 0.97 11 14 1.4e-06 0.0079 16.1 11.9 1 18 617 634 617 635 0.97 12 14 0.59 3.4e+03 -1.9 19.9 1 18 674 690 674 691 0.87 13 14 1.1e-09 6.3e-06 26.0 13.6 1 19 727 746 727 746 0.97 14 14 0.0096 55 3.9 8.7 1 11 756 765 756 775 0.93
Sequence Information
- Coding Sequence
- ATGTCATATTCGGAGCAAAACATCGACAATATTCAATCAACTCTAAGAGCAACCGCTCCTGAATTCAATCCATCAAATATACCAGTTGGTGGTGGTGCTATTAAAAGAACATCGTTCAGAAATGGTTATTCTAATTCCAACCACCTATATAGTTCTAGTATAGAAGATGGCATAGCAACGTCATCGGGCAGCAGTGGTAGTAGAAATGCAAATTATTCAAATGAATTCAATCAGTACACTTATGATAAAGAATCGACTTCTTCTAGTCATATACCGAACCAAAAGAAATATTCTAATGATAATAAGCGACAAAATTATTATAGTAACGGTTATTATAGACATGATtaccaaaaaagaaataatttcgAGAAACCCAATCAATATGGTAATAAGCAGCAAAACTATAATAGCAGGGATGATTTTGAATATGATCCCAATCGGCATGTTAATcattatgataaaaataataaaagcgGCACTTCCCCAATGGCATTAAATAACAACAAGAAGAGATTTGATAGGAATAACTTTTACAAGGAAAATTTGTATAGAGATAATCTACATAAATTTTCTAATGATGGAAGATACAATAAATCGGAGCAAAATGTTAAAAGAAaccattttcaatttgataaaAGATGCCATGATGGTAGtagctttttttttgaaaatgatcCAAAACAGCGGCAACATAATAGAGCATACGATAATAAATCCCAAGCTTCTGTACATAATATCAACAAAAATGGTAAGCGCAATTCTATCATTTATTATGATTGTGGGCAAAGAGAAAATTTAACAGAAATGATTAAAAGCAACCGTTTAGAATGTTTAGTTTGCTGCGATAAGATACGAAATATAGATAAAATATGGTCCTGCTCGAAATGCTTTCACATTATTCATTTGAACTGCATTTTTACATGGGCAAAATCGTCAAAGGTAGGGAAAAATTGGCGTTGCCCCGCTTGTCAAAATGTCTATACGGAAATTCCGAAAGATTATAAATGTTTCTGTGGAAAAATGTTGAATCCATCCGATCCATATGTTATTGCTCATAGTTGCGGTGATATGtgtttaaaaaagaaaaaaaaatgcgaaCATAAATGCTGTTTGCAATGTCATCCTGGACCATGTCCGGAATGCAATGTTATGGTAAAGAAAACATGCTGTTGTGGTAGTACAGAGCAAATGGTGAAATGTAGTACGGAATCGAAATTCACTTGCgaattaatttgtaataaaatgttGAATTGTGGAATTCATCAATGTTTGGAAAATTGTCATACGACTGATTGTCCACCATGTAAAGTGTTTATAATTCAAGAGTGTAATTGTGGGAAAACTGGAagaaaaGTACAGTgtaatgctgaaaatagtggAAAAACATCTTTTATTTGTGAAAATGAATGCGAAAAATCATTATCATGTAAAAATCATCAGTGCAAGAAACAATGTCATGAGGGTCCTTgtgaattatgtaaaatggatgtaaatataattaagAACTGTTGTTGTGGAAAAACACCGTTAGCAACACCAAGATTAACTTGTCTCGATCCAATTCCGTGTTGTAACAATATATGTGACAAAACATTAAAATGTGGTCACAGATGTAAGGAAAATTGTCACGAAAATGAATGTCCAAATTGTCCATTAACATCTGTAGCGCGTTGTCGTTGCGGACAAATGACTAAAGAAATTCCATGTACAGAATTGCCTAATTTCAATGATATTACGTGCCAGAAAAAATGCACCAAAaAACGTCTTTGTGGCAAACATAAATGCAATCAATTATGTTGCATAGAAATCGAACACGTTTGTCCAATAATATGCAATCGTCTATTAAAATGCGGCCTACATCGATGTACATTAAATTGCCATTCGGGACGATGTCCCGGATGTTTGGAAACTAGTTTCGAAGAGTTGCATTGTGAATGTGGTGCCACAACAATTTATCCCCCAATACCATGCGGAACTAAACCGCCACCTTGTAAGGAATTTTGCTCGAAAATTCCACCATGCGGCCATCCACCAGATCATTCATGTCACAGTGGTTCCTGTCCACCATGTTGTATATTAATGAAACGTTGGTGTTATGGTCGACATGAAGAGCGGGCAGCAATTCCATGTTTTCAAGGGAATTTCAGTTGTGGTCTTCCTTGTGGGAAACCAATGCCATGCGGCAATCATAAatgtattaaaccatgtcattcCGGCGATTGCCCAATTCCATGTACACAACCATGTAACGTGCCACGATCGATATGTGGCCATCCATGTAATAAACCTTGTCATCTTGATAAATGGTGTCCTGAAAGTGTTTGTAAATTTATGATGCCAATAACATGCCAGTGTGGTTTGCAAAAAGGTACTAAAGTCTGTACAGATTTAATTGATGAATTCAAGAATTTACAAATGGCCACACTGAAAGATAAGATTCATCAAAGTGATGATATTTCTGATGTAATTTGGCAACCAAACAAGATTACTGTATTGAAAGTTTTGGAATGCAACGATGAATGTAAAACATATGAGAGAAATCGTCGATTAGCAATTGGTTTACAAATTCAAAATCCAGATCATTCACAAAAATTAGTGCCACGCTACAATGAATTTCTTAAACAGTGGGGTAAAAAAGACCCACATTTCTGTCAAAGAATTCACGATAGATTAACTGAACTTGTTCAATTAGCTAAACAAAGTAAACAGAAATCACGGGCATACTCTTTTGAACCAATGAATCGTGATAAACGACATTTCATTCATCAATATTGCGAATACTTCGGTTTGGATAGTGAAGCATATGATAAAGAACCGAATCGAAATGTTGTAGCAACTGCTATTAAAGATAAGTCATATTTACCTGGAACAAGTTTGCTGGAAACAATTCAAAGAGAGAATGGACATAGGAAAGTTCCTGGACCGATGATTGGAATCAATTCTTTGGCTCGAGTGGAAAGTGGCACGTACAATGTATTAAATAAAGTATCGAAATAA
- Protein Sequence
- MSYSEQNIDNIQSTLRATAPEFNPSNIPVGGGAIKRTSFRNGYSNSNHLYSSSIEDGIATSSGSSGSRNANYSNEFNQYTYDKESTSSSHIPNQKKYSNDNKRQNYYSNGYYRHDYQKRNNFEKPNQYGNKQQNYNSRDDFEYDPNRHVNHYDKNNKSGTSPMALNNNKKRFDRNNFYKENLYRDNLHKFSNDGRYNKSEQNVKRNHFQFDKRCHDGSSFFFENDPKQRQHNRAYDNKSQASVHNINKNGKRNSIIYYDCGQRENLTEMIKSNRLECLVCCDKIRNIDKIWSCSKCFHIIHLNCIFTWAKSSKVGKNWRCPACQNVYTEIPKDYKCFCGKMLNPSDPYVIAHSCGDMCLKKKKKCEHKCCLQCHPGPCPECNVMVKKTCCCGSTEQMVKCSTESKFTCELICNKMLNCGIHQCLENCHTTDCPPCKVFIIQECNCGKTGRKVQCNAENSGKTSFICENECEKSLSCKNHQCKKQCHEGPCELCKMDVNIIKNCCCGKTPLATPRLTCLDPIPCCNNICDKTLKCGHRCKENCHENECPNCPLTSVARCRCGQMTKEIPCTELPNFNDITCQKKCTKKRLCGKHKCNQLCCIEIEHVCPIICNRLLKCGLHRCTLNCHSGRCPGCLETSFEELHCECGATTIYPPIPCGTKPPPCKEFCSKIPPCGHPPDHSCHSGSCPPCCILMKRWCYGRHEERAAIPCFQGNFSCGLPCGKPMPCGNHKCIKPCHSGDCPIPCTQPCNVPRSICGHPCNKPCHLDKWCPESVCKFMMPITCQCGLQKGTKVCTDLIDEFKNLQMATLKDKIHQSDDISDVIWQPNKITVLKVLECNDECKTYERNRRLAIGLQIQNPDHSQKLVPRYNEFLKQWGKKDPHFCQRIHDRLTELVQLAKQSKQKSRAYSFEPMNRDKRHFIHQYCEYFGLDSEAYDKEPNRNVVATAIKDKSYLPGTSLLETIQRENGHRKVPGPMIGINSLARVESGTYNVLNKVSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -