Pcyl006538.1
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- -
- Assembly
- GCA_949748235.1
- Location
- OX456489.1:1806018-1808828[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.028 1.4 9.5 4.3 1 23 19 41 19 41 0.98 2 17 0.12 6 7.5 3.8 1 23 79 101 79 101 0.97 3 17 1.7 83 3.9 0.7 1 23 185 209 185 209 0.95 4 17 0.00033 0.016 15.6 6.2 1 23 265 287 265 287 0.98 5 17 0.0016 0.078 13.4 0.6 1 23 300 322 300 322 0.98 6 17 0.016 0.78 10.3 0.8 2 23 366 388 365 388 0.96 7 17 1.2 59 4.4 3.1 1 23 398 421 398 421 0.95 8 17 0.0015 0.074 13.5 1.7 1 23 454 477 454 477 0.98 9 17 0.03 1.5 9.4 5.4 1 23 545 567 545 567 0.97 10 17 8.6e-05 0.0042 17.4 0.3 1 23 570 592 570 592 0.99 11 17 0.018 0.89 10.1 1.5 1 23 601 623 601 623 0.96 12 17 1.5 72 4.1 5.2 1 19 627 645 627 649 0.92 13 17 0.00045 0.022 15.1 2.0 1 23 658 680 658 680 0.98 14 17 0.0011 0.052 14.0 1.0 1 23 689 711 689 711 0.98 15 17 0.017 0.84 10.2 2.5 2 23 721 742 720 742 0.97 16 17 0.0033 0.16 12.5 3.8 2 23 753 774 752 774 0.96 17 17 0.004 0.19 12.2 2.2 1 23 782 804 782 804 0.98
Sequence Information
- Coding Sequence
- ATGTCCAATAGTGAAAATACACCAAATGAAAGTATGGAAATTCCAGTAGAAACATATAAATGTACACAGTGCAATTTCTATACGAATCATGAATATTATTTGGAACAACATATTTCATCACATGGTTTACCTGTTTTAATAGGACAATACAAACATCACAACAGTAATTTTGAACCTAATAGCAATCAATTACCAACATATAGGATAAAATCGCATGAATTACctttaatcatttttcaatgcTCTCACTGCGATTTTAAAACTGAtcaggaaaattattataaagaaCATACAATAAGTCACACTACAGGCAATACTGAACAATTACTTAATGAATCTTATCAACCATCACCAATAATACAATGTAACTATGAAAGTAATGAtcgaaaatataataataaatcggAACAGCAACTTATGTTAAATCCAATTGATCCGTCTTATAATAATCTAGCATTTTTTAATCAGGATTTAAATTCGAAAACGCCgaatattaattcaattagaTTTTTAAAACAGCAAACTGATCAGGTGACTAGGGATGTACAAACATTTCAATGTCCACTAGATGATTGTTCATTTAAAACGAATGAAGAAAACGACTTTAAACAGCACAGTTTAAATCATCAGATTGAACCATTTCCAGCATGTGCAAAATGCCAATTTCAAACGAATCAAGAAGATAATTTATATGAACACGATCAAATTGTTAAAGACAACGTGGAATTAATCAAAGTTGAAACTACCCAGATAACTCATCATAACCAGCAGCAACAAGGAATATGTTCACTATTTCGATGTCATGATTGTAATTATGAAACAACTCATAAAGCATTTTTAAAACGACATATGTTAAGTCACACAATGAATTTGAATATCAagaaagaaatggaaaaatataaatgcCCGAAATGCGATTTCGAAACTGAACTAGAAGCATATTTGAAACGTCATCAGTTAAGTCATCGATCGAAACATTATTTTCGATGTAAAATTTGCTGTTTTGAAACATTGtataagaaattgtatttgaTACATATAAAAGCGCATAAAACGAAGCGAAAATTACTGAAAAACGTAAAAACACGTCATGTGAAATGTGATCGATGTAATTTCCAAGTAGAAACTAAACAACAATTAGAAATCCATATGAAATTGAAACATAGCGAACGAACAActgataataatttacataaatgtTCATATTGTAATTATGAAACTAATTGGGAACCATGTTTGCGACGGCATATTGAAAGAATACATCAGGACGATATACCATTAAGTCAAATAAGTAAAAAGCGATCAGctagaattaaaaaagaaaaagatagaaaacaAGAAAAGCAAAAACAAGGAGTTTTTAAATGTAACAATTGCGATTTTTCCAGTATAAACAAGCAGTATCTTATTTTGCATTTGAAACGGTCACATTTATGTCAAGAAATGCCGAAAGATTCTGCGACGCCGAAATTTTACGAATGCAAACATAAAAATTGCTATTTTACAACTACTTtacataatattttttcaGAACACCAATTGCAACACGAAAACAGAATTTTTAGGTCTACAAATCATTCGTATAATCgattcaaaaataaaacaaaagataaatacgaaagacaaaaaatttataaatgttCACAATGTGATTTTCAAACAACCTATcgaaataatttgaaatcgCATCATGTTAAACATAAAAAGTATACTTGTAATTTATGCGATGAAAAAGTCGAATCCGCTTATGCATTGGTTAAACATCGACGAACACATCAAGTCAGTCCGAAAAAtggtatttatttatgtgaTATTTGTGGCTTTCAAAGTAAAAATGATCGTTCATTAAAAATGCATAAGAAAACCCATAATCCAGAATTTAAATGTCCTGATTGTTCATTTGAAACACACAGCAAGGTAAATTTCCAAAATCATTGTATAAATCATAAAAGTGCCGATGAGGTGACAATGTTTCCCTGTCCACATTGCCAATATCAATCACGATTAAAACGTAATTTAGCGTGGCACATGAAACGTCATGTGGATCCAACGAAAGCGAAAATCTTTAAATGTTCCCTATGCGAATACCAAACATATACAAATGCTCAATTGAAATCGCATTTAATGGTACATAAAAGTAAAGAAGAATTGACAATGTTAAAATGTGAGTTCTGTCAATTCGAAACCAAGCGCAAATCGAATATGGTTCAACATCGTTTGCgacatttaaaagattcacCGGACGTACCGTTATTGTCATGTCCAGAATGTCATTATACAACGGTGGCCAAGCGGCATTTAAACAAACATCGAAAGATACACAGTGTAAATCCGGATAAAATGTTTCAATGTACATTCTGTCCATATAAAATTCATCGAAAAGCCTATTTAATACGACATATTGAAAGTCATAAAAATACTGATAGTTTTTCAAATGATCAATGGCAACGGTATCAATCAAATTATCCAGCGGAATCATTGCAAAATATGGGCGTAACATTGGCACATTTCGGACAAAATTTTCAGCATAATATTGGCGAAACTTTAATGTAG
- Protein Sequence
- MSNSENTPNESMEIPVETYKCTQCNFYTNHEYYLEQHISSHGLPVLIGQYKHHNSNFEPNSNQLPTYRIKSHELPLIIFQCSHCDFKTDQENYYKEHTISHTTGNTEQLLNESYQPSPIIQCNYESNDRKYNNKSEQQLMLNPIDPSYNNLAFFNQDLNSKTPNINSIRFLKQQTDQVTRDVQTFQCPLDDCSFKTNEENDFKQHSLNHQIEPFPACAKCQFQTNQEDNLYEHDQIVKDNVELIKVETTQITHHNQQQQGICSLFRCHDCNYETTHKAFLKRHMLSHTMNLNIKKEMEKYKCPKCDFETELEAYLKRHQLSHRSKHYFRCKICCFETLYKKLYLIHIKAHKTKRKLLKNVKTRHVKCDRCNFQVETKQQLEIHMKLKHSERTTDNNLHKCSYCNYETNWEPCLRRHIERIHQDDIPLSQISKKRSARIKKEKDRKQEKQKQGVFKCNNCDFSSINKQYLILHLKRSHLCQEMPKDSATPKFYECKHKNCYFTTTLHNIFSEHQLQHENRIFRSTNHSYNRFKNKTKDKYERQKIYKCSQCDFQTTYRNNLKSHHVKHKKYTCNLCDEKVESAYALVKHRRTHQVSPKNGIYLCDICGFQSKNDRSLKMHKKTHNPEFKCPDCSFETHSKVNFQNHCINHKSADEVTMFPCPHCQYQSRLKRNLAWHMKRHVDPTKAKIFKCSLCEYQTYTNAQLKSHLMVHKSKEELTMLKCEFCQFETKRKSNMVQHRLRHLKDSPDVPLLSCPECHYTTVAKRHLNKHRKIHSVNPDKMFQCTFCPYKIHRKAYLIRHIESHKNTDSFSNDQWQRYQSNYPAESLQNMGVTLAHFGQNFQHNIGETLM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -