Pcyl009087.1
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- zfy1
- Assembly
- GCA_949748235.1
- Location
- OX456490.1:6224634-6226927[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5 2.4e+02 2.4 0.3 3 12 182 191 182 200 0.78 2 11 0.0039 0.19 12.2 0.3 2 23 229 251 228 251 0.95 3 11 0.0018 0.087 13.3 2.5 1 23 257 279 257 279 0.97 4 11 0.00016 0.0079 16.5 0.6 1 21 282 302 282 303 0.96 5 11 1e-05 0.0005 20.3 0.1 2 23 386 407 385 407 0.96 6 11 0.0021 0.1 13.0 1.1 1 23 413 435 413 435 0.95 7 11 1.3e-05 0.00062 20.0 2.6 2 23 441 462 441 462 0.98 8 11 0.0072 0.35 11.4 4.0 1 23 468 490 468 490 0.92 9 11 8e-05 0.0039 17.5 2.8 1 23 496 518 496 518 0.95 10 11 0.84 41 4.9 8.9 2 23 524 546 523 546 0.96 11 11 8.7e-05 0.0042 17.4 1.1 2 23 555 577 554 577 0.95
Sequence Information
- Coding Sequence
- atgGATACAAAATTAGATACAGGCCAATTAATAGAAAACGGTTGTTTAGCGTGTCTATCAACAACAGATTTTAAAGAAGACATATCCGAACACCtaataaatctttttcaagAGACATTTAATTTACAGATTAATCTGGAAGAAACTACGAGCAAGCAACTATGTTTAACTTGTAAGGATAAATTAGTTGAGGCGTCAGAGTTTCTATACCAAGTGAAAAGCTCCATTTGCCGTCTtgaaaattgtaaaagaacCGAAAAATCCGAGGTGAAAATTGAAGAAGTCATTTTAACCGAATTCAAAGACAACAGTGCAGATTCTGATTCTGATGATAGTGACTCTAATTTCAGTGAATTATCTGAGGTACCACCATCACAACAAGAGTCTCCGAATATCAATGAACAACATGATATTGAAAAAGATCAAGAAGGGAAAGAAATTATAGTAAAAGCAAATTGtcttttatgtatttttcaaGCAGCGAATATCGGAGATTTAGCGAATCACATGATAAATAAACACAAagaACTTGTAGGCTGCTGGTGTAAGAAATGTAATAAGCTATTCGATGATTTGGAAGATCATGAATTGGCGACACATAGCAATAAAATATGGTGTGATCTTTGTAAGCTGTATTTAACATGCAAAGCATATTTGAAGCATTTAGAATGTCATACAAGTTTAAAATGTAAAGAATGCGATGAGGAATTCGAATATGAATCAGTTCTACATGAACACATTGCAATAAAACATAATCAGAATACAGAGTTTGAATGTCCAAATTGTTTCAAAACATTCACAGAATATAAAAgATTTCAAAAACACGTAACGGTACATGGTTACTACACTTGTAAAGTGTGTGATAAACGTTACGAATCACCTGTATATCTTATGACACATATATGTGATGGGTTAACTAAAGACCCAGCAACAGGAAATGTAgcaaaaaacaataataaagaaCGAAAAGCACTAGATGATTATACTATAGAGGAATTGAGTAATATTGATATGAAATCAATCGATAAAAAAACGCATTTCGTTCGAGAAACCTCGACATGTCAATTCTGTCAGAAAACATTAAAGACGGAGACTTCAAGAAGTTTTCACAGATTCAAACGACATCTCCAATCACATTTAGGTCTACTTCCATTGATATGCGAATATTGTGGAAAAGGATTTGCTTATAATTCGACATTGATAACTCACGAACTTACCCACACGAAAGAGAAATTGTTTGTTTGCAGTGTATGTGGAAAAaaatatgcAAATAGTACTTcgtttaattttcatttaatgcaACATAATGGCAAACCGGAAAAGTGTCCATTATGTCCTAAACGATATTGTCGAAAATCAGAATTGGAATTGCATTTACAAAAACACAAAGGCGTTCGTCCGTATTTATGTACAGATTGTGGAAAATCATTTCTACAAAAAAGTCATTTGACTTGTCATATAACGGCACATTCAGATGAAAGACCGTACTCCTGTAATAAATGCGataaaaaatttaagaaaaagtttttattaaaagaacaTGAAATTCTACATGGAGaGAAAAAACAGAAATGTTCCCAATGCCATTATTCGTGCCATGACAAATACCGTTTAAAACAACACACTTTAAAGATCCATTTAAAAGCCGAAGTGAAAAACTGGCCATGTCAACTGTGCGATAAAGAATTTACAAAATTGTCTCTTTTAAATacgcataaaaaaaaatcccataatgttattatttga
- Protein Sequence
- MDTKLDTGQLIENGCLACLSTTDFKEDISEHLINLFQETFNLQINLEETTSKQLCLTCKDKLVEASEFLYQVKSSICRLENCKRTEKSEVKIEEVILTEFKDNSADSDSDDSDSNFSELSEVPPSQQESPNINEQHDIEKDQEGKEIIVKANCLLCIFQAANIGDLANHMINKHKELVGCWCKKCNKLFDDLEDHELATHSNKIWCDLCKLYLTCKAYLKHLECHTSLKCKECDEEFEYESVLHEHIAIKHNQNTEFECPNCFKTFTEYKRFQKHVTVHGYYTCKVCDKRYESPVYLMTHICDGLTKDPATGNVAKNNNKERKALDDYTIEELSNIDMKSIDKKTHFVRETSTCQFCQKTLKTETSRSFHRFKRHLQSHLGLLPLICEYCGKGFAYNSTLITHELTHTKEKLFVCSVCGKKYANSTSFNFHLMQHNGKPEKCPLCPKRYCRKSELELHLQKHKGVRPYLCTDCGKSFLQKSHLTCHITAHSDERPYSCNKCDKKFKKKFLLKEHEILHGEKKQKCSQCHYSCHDKYRLKQHTLKIHLKAEVKNWPCQLCDKEFTKLSLLNTHKKKSHNVII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -