Pcyl011069.1
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- -
- Assembly
- GCA_949748235.1
- Location
- OX456491.1:9348215-9351897[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.62 30 5.3 2.8 1 23 292 314 292 314 0.90 2 11 0.045 2.2 8.9 2.1 1 23 385 408 385 408 0.95 3 11 0.00017 0.0082 16.5 3.4 1 23 414 436 414 436 0.97 4 11 0.00096 0.047 14.1 1.3 1 23 448 471 448 471 0.94 5 11 4e-06 0.00019 21.6 4.8 1 23 476 498 476 498 0.97 6 11 4.1e-05 0.002 18.4 1.2 1 23 504 526 504 526 0.96 7 11 0.0017 0.084 13.3 6.4 1 23 532 554 532 554 0.97 8 11 0.00016 0.0079 16.5 5.6 1 23 560 582 560 582 0.98 9 11 0.0002 0.0098 16.2 4.0 1 23 588 610 588 610 0.98 10 11 0.0019 0.094 13.2 6.4 1 23 618 640 618 640 0.98 11 11 0.0041 0.2 12.1 3.1 1 23 646 668 646 668 0.96
Sequence Information
- Coding Sequence
- atggcGGCGgaaatacaattaatttctGAATCACATTTATGTCGATTATGTTGCACGAAAAATGTCTATGGAATCGATTTATTTGCTGAAAATGCAGATTCTGAAAGCCTATATAAATTAGTAAATCGCTATTTACCCATTCAGGTTGAAAATGATGATTTATTGCCAAAAACAATTTGCCCAGGTTGCCACATTCAACTTGAAAGCACCAAACTGTTTATGGATCTCATTATCAAAGGACAATCTGATCTACggaaattaattcaaatagaACAGGAACATTTGCGGAAAGAACACGATGAAAAACAGAAATTAGAGAAACTATTGAAAAATCAAGAGAATCTCTGCGCCAATGTGGAAAGCTATACATTACAATCTGATGAGAATGgagaaaaatatattatacaaattttcaatgAAAATGCTTTGTTTCCACCACAACACGAGTTGGTGTTTGATGCTACTGGTGGCGATATAGAAAAACCGAAACGGAAAAGGGGACGGCCGCCAAAATCCCATAATCAAGAGGAACTAGCAGAGTCatcaaaagaaataaaacggGAAAGTAAACGATCAACCGATGATGAAAACAATCAAGAAAATGAAGATCCAGATAGTAGAAAACGGAGAAAAATTCGTGCTCCAGTTCGATATACTGGAACTGTACAGGGTGACgaattagataaaattttcaaatcagATGAAACAACGACTAATGGAGCAAATGAGGAGCAAAACAGAATAAAACCTATTGGTAAAAATCTGGTGGAAATTGGAAAAGTTGTTCGAACTGATGAACTAAACTCGGAAAAGTCGGTTTATTTTCATAAGGTGCCACGGAAATACACTAAGAGAAAATCAGGAAAGCGTAAGTTTGTGTGTAAAATTTGTAACAAAAGTATGTCCCATCTTGGACAATTTGAATTCCATTCAAAAAGTCATAAAGCAACTTATGGCTGTGAAACAAAAGATTGCCAATTACAAAGTGACAAGAAAAGTGACATAATTGAACATCAAAAGGAAACAGAACATGTTGGAATCGTTTTAATCGATCCAATTAGTAATAGCGTTTTACTTAACctacaagaaaaaatatacgaTGACGCTTCAACAAGTaacaaagagaaaaagaatCACGTGGGCGAAAAAACATTTGAATGTCTGAAATGTGCGAAATCATTTTCCTGTAAACAGAATTACGAAGTGCATCTAAAGGCTGTGCATGATGGCGTGAGACCATTTAAATGTGACAAATGTCCCAAAAAATTCGCTTATGCATGTAGCCTGAAAACTCATCAAGTTTCCCATAAAAATGAGTCGAATAAATTCGGAAAACATTGTTTTTTATGTGATATATGTGCCAAGAAATTCAATCATCCTAGCAGTTTGCTGTATCATAAAGAAACCGAACATGGCAATCaaagGTTTATTTGCAATAAATGTAATAAGACTTTCAAACATCGGCAATTGTTACAACGTCATCAAATGGTGCACTCGGACGAACGGCCGTTTAAATGTCATTTATGTTCACAAGCTTTTAAAACGAACAGCAATTTGGTTATGCATGGAATTGTACATACTGGCGTGAAAAAATTCCATTGCACGAAATGTAATCAGTCTTTTGGACATAAAACGTCATTTTCTATTCATATGAGatGGCACGAAGGTACCAAACCTTATCAGTGCGATTGTTGTCATAAAACCTTTTCACAAAAAGGCAATCTCCTGGAACATCGGAGGATTCATACGGGTGAAAAGCCATTTTCTTGCGAATTTTGTCCTAAAAGATTTACAACTTCGTCGCAGCAAAAATTACATCGAAAAAAACACTGTGATGAggGTAATAAACAATATCACTGTGGAATATGTGACAAACATTTTCAGCATAAAGAATCGTATGTAATTCACTTACGTAGACATTTAAATACAGTTTCATTCAAGTGTAAATATTGTGGAAAAGGCTTTTCAGAAAACTGGACTTGTTTAAGACATGAGAAAATCCATTTACGGCAAAAGATTTACAATTGTGATTGTGGAAAGACGCTTATTGATGGTGCCAGTGTAATTAGGCATAAGAAAATGTTTTGTCCATTGAGAAAAACTattgttgaaaataatttcgATGGTGAAACTAATGAAAATGATCAGAATTTACAGGAAAATATACCCATAAAGGTGAAAGCTGCTGGAAGTAATACCACAGAGGAAATTGTGGGAAATCCTATTATAGATataaaTTCTTCAAACATTCAGGAACTGTTCGATAACGAAGGTAATGCAATTAATTTTACGGCGTCAAATGGCGAACCAATCGTTATTGCTTCTGCGGACAATACGGAACAGTTCCAAGGTGTTATGCAGGATGGCACGATTGTTAGTTTTGATATTTTGCCacaacaaaatgaaatatgTGATAATCAGGCTACATCGAAACAATCCTTAAATCTTGGATTGGATGGGGAAATTGAATTTTCCGATCAATCGAATCCTGAAATGCTCACCAATGTGAAAAACCCGTTTTTAACAGAAGATGGCAAAGTATGTTTTATTACATCGATCGACGgcaattcttttttaatcaattaa
- Protein Sequence
- MAAEIQLISESHLCRLCCTKNVYGIDLFAENADSESLYKLVNRYLPIQVENDDLLPKTICPGCHIQLESTKLFMDLIIKGQSDLRKLIQIEQEHLRKEHDEKQKLEKLLKNQENLCANVESYTLQSDENGEKYIIQIFNENALFPPQHELVFDATGGDIEKPKRKRGRPPKSHNQEELAESSKEIKRESKRSTDDENNQENEDPDSRKRRKIRAPVRYTGTVQGDELDKIFKSDETTTNGANEEQNRIKPIGKNLVEIGKVVRTDELNSEKSVYFHKVPRKYTKRKSGKRKFVCKICNKSMSHLGQFEFHSKSHKATYGCETKDCQLQSDKKSDIIEHQKETEHVGIVLIDPISNSVLLNLQEKIYDDASTSNKEKKNHVGEKTFECLKCAKSFSCKQNYEVHLKAVHDGVRPFKCDKCPKKFAYACSLKTHQVSHKNESNKFGKHCFLCDICAKKFNHPSSLLYHKETEHGNQRFICNKCNKTFKHRQLLQRHQMVHSDERPFKCHLCSQAFKTNSNLVMHGIVHTGVKKFHCTKCNQSFGHKTSFSIHMRWHEGTKPYQCDCCHKTFSQKGNLLEHRRIHTGEKPFSCEFCPKRFTTSSQQKLHRKKHCDEGNKQYHCGICDKHFQHKESYVIHLRRHLNTVSFKCKYCGKGFSENWTCLRHEKIHLRQKIYNCDCGKTLIDGASVIRHKKMFCPLRKTIVENNFDGETNENDQNLQENIPIKVKAAGSNTTEEIVGNPIIDINSSNIQELFDNEGNAINFTASNGEPIVIASADNTEQFQGVMQDGTIVSFDILPQQNEICDNQATSKQSLNLGLDGEIEFSDQSNPEMLTNVKNPFLTEDGKVCFITSIDGNSFLIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -