Pcyl007457.1
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- prdm10_1
- Assembly
- GCA_949748235.1
- Location
- OX456489.1:9528550-9533407[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0024 0.11 12.9 0.1 2 23 532 553 531 553 0.96 2 12 0.00057 0.028 14.8 0.9 1 23 628 650 628 650 0.96 3 12 0.0023 0.11 12.9 0.2 1 20 661 680 661 682 0.93 4 12 0.46 22 5.7 1.7 2 23 696 717 695 717 0.96 5 12 0.0051 0.25 11.8 0.4 2 23 726 747 725 747 0.97 6 12 0.054 2.6 8.6 0.7 1 20 754 773 754 776 0.91 7 12 0.00045 0.022 15.2 3.5 1 23 782 805 782 805 0.97 8 12 5.7e-05 0.0027 18.0 2.9 1 23 810 832 810 832 0.97 9 12 3.4e-05 0.0016 18.7 2.0 1 23 838 861 838 861 0.94 10 12 0.0031 0.15 12.5 1.6 1 23 891 914 891 914 0.97 11 12 0.00037 0.018 15.4 2.9 1 23 936 959 936 959 0.97 12 12 0.0022 0.11 13.0 2.3 2 23 1000 1022 999 1022 0.97
Sequence Information
- Coding Sequence
- ATGAACATAGACGGAGAACCATTAGAATCCGATGTTGAAAACATCTTATCACCTTCAAATCCGGCTGAAACCTGGTCCGAAGAAGCAGAAAAGCTAAATAATATTCATAACAATACATTGCTGTATATTTCTGtcaattatgaaaaaaaatcaaaaccaCTGTCAACCGCTACAATTTCAACCACTTCGACCATAACTAATGAACAACAATCCCAAATCAGTCATGAAACATTTGCAGATTTTATCAGATCTGATGAAGTGAGTCCACTTGATCCAAATATGAGTTCAGTAGCGCAATATAGTCCAACGCATGTTACCCAGCATGATAGTATTATTACTACAGCTGCTTCTGTCGCAATTACAAGCACCATCACCGATACAGCtactaacaataattataatagtgATTCAATAGTTATTCAACAGCAGCAATATGATATCAGTAATGGACGAAACAATGAAGTGGAAAATGAAATACACAAAGATGTAAATTTAACTATAGATGATATTGAAAGTGTTAATATAAGTAATGTtgatagtagtaataatatacCAACAATTTtatgtagtaataataatgaattacgAAATCTAACGGATGATAATCATCTTTTTGAAATGATTGGTAATGAGAAATTGAGTTTAAATAATCAAGGAGATTTGCAAATTGTTCCAGATGGTGAACATGGtgttaaattgttaattactGATCGTACAACAGGAATATCTTACAGTGTCAACACACAAGAATTATTAATCGAGCATTGTCTTGATGACGATCAACGTCTACTTGAATCAATTGCACCTGATACAATATTAGAATCGGATTTATTAACATTAGATGATAGTACATTAAGAACGGAATTAAATAATACTGGCAGTAATagtggtagtagtagtaatttAATAACAGCAGCTGTACCATCTACAATTACTGAAACATCTACCACAACATCAGCCATAGGAACTTGTCCTGATGACGTTTCTAATGAAGAAGAACTAATTATTGgcgattatataaataactGTTTAACAAATGAAGAAATTGATCAGGAAATTATGTTAAGTAATCGTTTAACCACAAGAAGTATGAGTAATAGTGGTAATGGGAAAAGTGAAGAAGAAATATTGGGTtgtgtatataatataattgataGACCAATACTAACCAGAGCACGTGCCACCTTGCCGGAATCGTATTTAGCAATTGGAAATATTGATGATGAACCTGCGATATTTGCAAGAAAATCAATACCAAAACGTAGTCGTTTTGGTCCATTACAAGGGCAATTATATCCAAAAGATTCATATAAATTGAAAACGGAAgataattcttattttttagtAGATTTAGATGGGATCACTTTTGTTCTTGATACATCGGACGAACATGTTGCCAATTGGATGAGTTTTGTCAGATGGGCGGTTACATATGAAGAacaaaatgtaattgtatttCAAGCAGGCAAcgaattatattttattacaacAAAGTTAATTTCACCTAAAGAAGAACTGAAGGTTGGTTATGGTTTAACATATGCAAATCATTTCAATTTAGAAGTACTGAAACCAGTAGTTAAAAATACATGGCCTTGTTACGAATGTAGTGACAGTTTTCCATCTTCAGAAGAACTtcaaaaacatttaaatattcacGACCAATGGAAAACTGAGAATAATATCAAGCCAAAGCGAATATATCGACGAAAATTATTACTGTTGAAAACATCGCAGTTGGATATTGTTGAATGTAATCAGTGCAAAGAACCATTTGAGCCAAATGTTAATTGTCGCACCTTATATAagcatttaaatgataaacatAAAGATTGTGCTGCTGGTGTGAAAATTAacgaatttttttctatacatCCGGTCTACGAATGTAATTATTGCCAAATGCGGTTTCGAacagaaattttattaaaaatccaTAAATTAGAACATGATCCAGAATTATCATTAGAACAAAATAATCATGTATGTCCACAGTGTCAAAGGAAGTTTCCAACACGTAGGCAACTAGTATTACATGTTGCCAACTATTCGTTgtcattgaaaataaaaaaagatgacAGCGTTCGTTGTGGACTTTGTTATAAATTATTCGCCTGTAAAGAACGACTTCAGAAACATATGCTTGTGCACGGTTCAGATGATCAAAAACCGATGCAATGTAAAATATGCGAAAGACGTTTTCTAACCAATTCCGCTCTATCGGGACATTTAAAAGTGCATTTCATTGGTCAGAAAAATTTTGAATGTCCCATATGTAAAGAACGTTTCGAACATgttctaaaattaaaaatgcatGTACCAAAACATGCGCAAAATAACCAATACACGTGTCCACATTGtaaaaaaatctttaaaaaatacagTGTAATACGTAAACATATTCGAGCATTTCATAGTGAACGCAAATTTGATTGTTTACAATGTTCGAAAATCTTTTCAACCGTCGATCATTTGAAGAAACATATGCTGAAACATTCCGATCATAAAGAGTTTCTATGCTCCGATTGTGGTAAACAATTTAAACGTAGAGATAAATTGTTCGATCATGTTAAAAAGATGCATGTAGAAGCTAGAAAAGTTCCGGAAGTTgttaagaaaaagaaaaaattcctACCGTCAGTTGAACCAACTGATTTTCatcgatttatttataaatgtcATAATTGTTTGGTTGGATTTAAAAGAAGagGAATGTTAGTTAATCATTTGGCTAAACGTCATCCAGATATACCACCAGATTCTGTACCTGAATTGAATCTACCAATACTACAAACGACaaagaattattattgtcaatatTGTGACAAAGTATATAAAAGTAGTTCCAAACGTAAAATGcacatattgaaaaaccatcCTGGATCGGCATTGCCAGTTAATAGCCGGCAGCAGGGTAGCAGCAATAACTTACCAAATGGTGGTGCTACAAATCAAACATTTGCTCAAACTGTTGGCAGTGTAACAACACGACCAAAACAATGTCAATGGTGTCATAAACAATATGCAAGTAAAGCGAAATTGTTGCAACATGTACGCAAAGAACATGCTGCAAATCAAGCGGACATGGACAGTCAAATAAATGACAACAATGACGAATcgttattttcaaataatttccttAATGATGACAAATTAGATAAGATTGTAGAAGAGGCACCAGCATCAcctctaccaccaccaccatcttcacaatcatcatcattattactTACAAACACAAAGCCATTAGCAACCAATCGTTTTATAGTAACATTAAAACAAGAGGATGATGGCGGTGAAACTAGTACTGGTGGTGGCGGAGAGATTCCTTTAAATCAAAACCACATCACAACAGATGGTAATATAATGGAAATTACAATGGATGGTTGTATCGACAATGcatttaatataaatgaagcaaatgggaaattttgtAATCTATCAATTGATGGTGgtgataatgatgatgttgTTAATGAAGCTGGTAGTTTGTTGATTGTTAATAGAAATGCACTTGAGAGTCAAAATTCACAATTGTATCAATTGTTAAATGGTAGCAGTAATTGTATGCTGCCATCACGCTGA
- Protein Sequence
- MNIDGEPLESDVENILSPSNPAETWSEEAEKLNNIHNNTLLYISVNYEKKSKPLSTATISTTSTITNEQQSQISHETFADFIRSDEVSPLDPNMSSVAQYSPTHVTQHDSIITTAASVAITSTITDTATNNNYNSDSIVIQQQQYDISNGRNNEVENEIHKDVNLTIDDIESVNISNVDSSNNIPTILCSNNNELRNLTDDNHLFEMIGNEKLSLNNQGDLQIVPDGEHGVKLLITDRTTGISYSVNTQELLIEHCLDDDQRLLESIAPDTILESDLLTLDDSTLRTELNNTGSNSGSSSNLITAAVPSTITETSTTTSAIGTCPDDVSNEEELIIGDYINNCLTNEEIDQEIMLSNRLTTRSMSNSGNGKSEEEILGCVYNIIDRPILTRARATLPESYLAIGNIDDEPAIFARKSIPKRSRFGPLQGQLYPKDSYKLKTEDNSYFLVDLDGITFVLDTSDEHVANWMSFVRWAVTYEEQNVIVFQAGNELYFITTKLISPKEELKVGYGLTYANHFNLEVLKPVVKNTWPCYECSDSFPSSEELQKHLNIHDQWKTENNIKPKRIYRRKLLLLKTSQLDIVECNQCKEPFEPNVNCRTLYKHLNDKHKDCAAGVKINEFFSIHPVYECNYCQMRFRTEILLKIHKLEHDPELSLEQNNHVCPQCQRKFPTRRQLVLHVANYSLSLKIKKDDSVRCGLCYKLFACKERLQKHMLVHGSDDQKPMQCKICERRFLTNSALSGHLKVHFIGQKNFECPICKERFEHVLKLKMHVPKHAQNNQYTCPHCKKIFKKYSVIRKHIRAFHSERKFDCLQCSKIFSTVDHLKKHMLKHSDHKEFLCSDCGKQFKRRDKLFDHVKKMHVEARKVPEVVKKKKKFLPSVEPTDFHRFIYKCHNCLVGFKRRGMLVNHLAKRHPDIPPDSVPELNLPILQTTKNYYCQYCDKVYKSSSKRKMHILKNHPGSALPVNSRQQGSSNNLPNGGATNQTFAQTVGSVTTRPKQCQWCHKQYASKAKLLQHVRKEHAANQADMDSQINDNNDESLFSNNFLNDDKLDKIVEEAPASPLPPPPSSQSSSLLLTNTKPLATNRFIVTLKQEDDGGETSTGGGGEIPLNQNHITTDGNIMEITMDGCIDNAFNINEANGKFCNLSIDGGDNDDVVNEAGSLLIVNRNALESQNSQLYQLLNGSSNCMLPSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -